ggKbase home page

scnpilot_solids1_trim150_scaffold_1074_curated

Search features with annotation key words

Displaying items 31-60 of 62 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids1_trim150_scaffold_1074_curated_31
Micromonospora carbonacea, Micromonospora, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

29075..30286
DNA (1212bp) protein (404aa)
acyl-CoA transferase n=1 Tax=Nocardioides sp. Iso805N RepID=UPI0003812BAE
Micromonospora carbonacea strain JXNU-1 contig3, whole genome shotgun sequence {ECO:0000313|EMBL:KIR61495.1}; TaxID=47853 species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Micromonospora.;" source="Micromonospora carbonacea.;"
formyl-CoA transferase
scnpilot_solids1_trim150_scaffold_1074_curated_32
Cryptosporangium arvum, Cryptosporangium, Frankiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

30303..31160
DNA (858bp) protein (286aa)
hypothetical protein n=1 Tax=Micromonospora sp. CNB394 RepID=UPI00037AC6BE
Putative metal-dependent hydrolase {ECO:0000313|EMBL:EXG81629.1}; TaxID=927661 species="Bacteria; Actinobacteria; Frankiales; Cryptosporangiaceae; Cryptosporangium.;" source="Cryptosporangium arvum DSM 44712.;"
cyclase family protein
scnpilot_solids1_trim150_scaffold_1074_curated_33
Cryptosporangium arvum, Cryptosporangium, Frankiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

31157..32614
DNA (1458bp) protein (486aa)
hypothetical protein n=1 Tax=Streptomyces canus RepID=UPI0003674E11
Uncharacterized protein involved in propionate catabolism {ECO:0000313|EMBL:EXG81628.1}; TaxID=927661 species="Bacteria; Actinobacteria; Frankiales; Cryptosporangiaceae; Cryptosporangium.;" source="Cryptosporangium arvum DSM 44712.;"
MmgE/PrpD family protein
scnpilot_solids1_trim150_scaffold_1074_curated_34
Streptomyces himastatinicus, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

32680..34146
DNA (1467bp) protein (489aa)
amidohydrolase; K01466 allantoinase [EC:3.5.2.5]
Dihydropyrimidinase n=1 Tax=Streptomyces himastatinicus ATCC 53653 RepID=D9WL09_9ACTO
Dihydropyrimidinase {ECO:0000313|EMBL:EFL29284.1}; TaxID=457427 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces himastatinicus ATCC 53653.;"
scnpilot_solids1_trim150_scaffold_1074_curated_35
Streptomyces sp. PCS3-D2, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

34174..34998
DNA (825bp) protein (275aa)
SC4G6.02; citrate lyase subunit beta; K01644 citrate lyase subunit beta / citryl-CoA lyase [EC:4.1.3.6 4.1.3.34]
hypothetical protein n=1 Tax=Amycolatopsis nigrescens RepID=UPI0003771F3F
Citrate lyase subunit beta {ECO:0000313|EMBL:EYU66441.1}; TaxID=1460244 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces sp. PCS3-D2.;"
scnpilot_solids1_trim150_scaffold_1074_curated_36
unknown

Not on your lists

35043..35585
DNA (543bp) protein (181aa)
hypothetical protein n=1 Tax=Nocardioides sp. Iso805N RepID=UPI00037EA8F2
scnpilot_solids1_trim150_scaffold_1074_curated_37
RBG_13_Deltaproteobacteria_53_10_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

35582..35935
DNA (354bp) protein (118aa)
hypothetical protein n=1 Tax=Nocardioides sp. Iso805N RepID=UPI00035C9642
Tax=RBG_13_Deltaproteobacteria_53_10_curated
scnpilot_solids1_trim150_scaffold_1074_curated_38
unknown

Not on your lists

comp(35981..36976)
DNA (996bp) protein (332aa)

This feature has no annotations

scnpilot_solids1_trim150_scaffold_1074_curated_39
Frankia sp. CcI3, Frankia, Frankiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(36985..37602)
DNA (618bp) protein (206aa)
Sigma-24 n=1 Tax=Frankia sp. (strain CcI3) RepID=Q2J5B1_FRASC
sigma-24; K03088 RNA polymerase sigma-70 factor, ECF subfamily
Sigma-24 {ECO:0000313|EMBL:ABD13531.1}; TaxID=106370 species="Bacteria; Actinobacteria; Frankiales; Frankiaceae; Frankia.;" source="Frankia sp. (strain CcI3).;"
scnpilot_solids1_trim150_scaffold_1074_curated_40
Nakamurella multipartita, Nakamurella, Nakamurellales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(37697..38329)
DNA (633bp) protein (211aa)
XRE family transcriptional regulator n=1 Tax=Frankia sp. Iso899 RepID=UPI0003B42C92
XRE family transcriptional regulator
Transcriptional regulator, XRE family {ECO:0000313|EMBL:ACV80569.1}; TaxID=479431 species="Bacteria; Actinobacteria; Nakamurellales; Nakamurellaceae; Nakamurella.;" source="Nakamurella multipartita (strain ATCC 700099 / DSM 44233 / JCM 9543 /; Y-104) (Microsphaera multipartita).;"
scnpilot_solids1_trim150_scaffold_1074_curated_41
Burkholderia phenoliruptrix, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(38808..39944)
DNA (1137bp) protein (379aa)
sugar ABC transporter permease n=1 Tax=Burkholderia sp. JPY347 RepID=UPI00037070CE
ribose transport system permease
Ribose transport system permease protein {ECO:0000313|EMBL:AFT90377.1}; TaxID=1229205 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia phenoliruptrix BR3459a.;"
scnpilot_solids1_trim150_scaffold_1074_curated_42
Rhodococcus opacus, Rhodococcus, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(39941..41494)
DNA (1554bp) protein (518aa)
sugar ABC transporter ATP-binding protein; K10441 ribose transport system ATP-binding protein [EC:3.6.3.17]
sugar ABC transporter n=1 Tax=Rhodococcus opacus RepID=UPI00029CC99B
Ribose import ATP-binding protein RbsA 2 {ECO:0000313|EMBL:AHK29084.1}; TaxID=543736 species="Bacteria; Actinobacteria; Corynebacteriales; Nocardiaceae; Rhodococcus.;" source="Rhodococcus opacus PD630.;"
scnpilot_solids1_trim150_scaffold_1074_curated_43
Actibacterium mucosum, Actibacterium, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(41554..42840)
DNA (1287bp) protein (429aa)
hypothetical protein n=1 Tax=Burkholderia sp. JPY347 RepID=UPI00036715E2
Ribose transport system substrate-binding protein {ECO:0000313|EMBL:KAJ53958.1}; TaxID=1454373 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Actibacterium.;" source="Actibacterium mucosum KCTC 23349.;"
ribose transport system substrate-binding protein
scnpilot_solids1_trim150_scaffold_1074_curated_44
Streptomyces griseoaurantiacus, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(43155..43784)
DNA (630bp) protein (210aa)
glycerone kinase (EC:2.7.1.29); K00863 dihydroxyacetone kinase [EC:2.7.1.29]
hypothetical protein n=1 Tax=Streptomyces sulphureus RepID=UPI000365DAFF
Putative dihydroxyacetone kinase subunit 2 {ECO:0000313|EMBL:EGG48589.1}; TaxID=996637 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces griseoaurantiacus M045.;"
scnpilot_solids1_trim150_scaffold_1074_curated_45
Streptomyces griseoaurantiacus, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(43775..44791)
DNA (1017bp) protein (339aa)
dihydroxyacetone kinase subunit 1; K05878 dihydroxyacetone kinase, N-terminal domain [EC:2.7.1.-]
Putative dihydroxyacetone kinase subunit 1 n=1 Tax=Streptomyces griseoaurantiacus M045 RepID=F3NDF3_9ACTO
Putative dihydroxyacetone kinase subunit 1 {ECO:0000313|EMBL:EGG48590.1}; TaxID=996637 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces griseoaurantiacus M045.;"
scnpilot_solids1_trim150_scaffold_1074_curated_46
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

comp(44899..45450)
DNA (552bp) protein (184aa)
Putative uncharacterized protein id=3847110 bin=GWC2_Methylomirabilis_70_16 species=delta proteobacterium NaphS2 genus=unknown taxon_order=unknown taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
hypothetical protein
Tax=GWC2_Rokubacteria_70_16_curated
scnpilot_solids1_trim150_scaffold_1074_curated_47
Acidothermus cellulolyticus, Acidothermus, Acidothermales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(45586..46104)
DNA (519bp) protein (173aa)
Thioesterase superfamily protein n=1 Tax=Acidothermus cellulolyticus (strain ATCC 43068 / 11B) RepID=A0LRX4_ACIC1
thioesterase superfamily protein
Thioesterase superfamily protein {ECO:0000313|EMBL:ABK52184.1}; TaxID=351607 species="Bacteria; Actinobacteria; Acidothermales; Acidothermaceae; Acidothermus.;" source="Acidothermus cellulolyticus (strain ATCC 43068 / 11B).;"
scnpilot_solids1_trim150_scaffold_1074_curated_48
Rhodococcus sp. BCP1, Rhodococcus, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(46101..46964)
DNA (864bp) protein (288aa)
Enoyl-CoA hydratase/carnithine racemase n=1 Tax=Rhodococcus sp. EsD8 RepID=N1MCK3_9NOCA
Enoyl-CoA hydratase {ECO:0000313|EMBL:KDE15139.1}; TaxID=931223 species="Bacteria; Actinobacteria; Corynebacteriales; Nocardiaceae; Rhodococcus.;" source="Rhodococcus sp. BCP1.;"
enoyl-CoA hydratase
scnpilot_solids1_trim150_scaffold_1074_curated_49

Not on your lists

comp(47132..49537)
DNA (2406bp) protein (802aa)
aldehyde dehydrogenase n=1 Tax=Thermus islandicus RepID=UPI0003B6F066
Oxidoreductase {ECO:0000313|EMBL:BAL55817.1}; TaxID=198431 species="unclassified sequences; environmental samples.;" source="uncultured prokaryote.;"
aldehyde oxidase and xanthine dehydrogenase molybdopterin binding protein
scnpilot_solids1_trim150_scaffold_1074_curated_50
Ilumatobacter coccineus, Ilumatobacter, Acidimicrobiales, Acidimicrobiia, Actinobacteria, Bacteria

Not on your lists

comp(49534..50343)
DNA (810bp) protein (270aa)
carbon monoxide dehydrogenase medium subunit (EC:1.2.99.2)
Carbon monoxide dehydrogenase medium subunit {ECO:0000313|EMBL:BAN03646.1}; EC=1.2.99.2 {ECO:0000313|EMBL:BAN03646.1};; TaxID=1313172 species="Bacteria; Actinobacteria; Acidimicrobiia; Acidimicrobiales; Acidimicrobiaceae; Ilumatobacter.;" source="Ilumatobacter coccineus YM16-304.;"
Carbon monoxide dehydrogenase medium subunit n=1 Tax=Ilumatobacter coccineus YM16-304 RepID=M5A5K1_9ACTN
scnpilot_solids1_trim150_scaffold_1074_curated_51
Thermobispora bispora, Thermobispora, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(50340..50861)
DNA (522bp) protein (174aa)
(2Fe-2S)-binding domain-containing protein; K03518 carbon-monoxide dehydrogenase small subunit [EC:1.2.99.2]
carbon monoxide dehydrogenase n=1 Tax=Nonomuraea coxensis RepID=UPI00037F5D0C
(2Fe-2S)-binding domain protein {ECO:0000313|EMBL:ADG87371.1}; TaxID=469371 species="Bacteria; Actinobacteria; Actinobacteria incertae sedis; Thermobispora.;" source="Thermobispora bispora (strain ATCC 19993 / DSM 43833 / CBS 139.67 /; JCM 10125 / NBRC 14880 / R51).;"
scnpilot_solids1_trim150_scaffold_1074_curated_52
Arthrobacter sp. FB24, Arthrobacter, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(51168..51857)
DNA (690bp) protein (230aa)
Transcriptional regulator, GntR family n=1 Tax=Arthrobacter sp. (strain FB24) RepID=A0JTB0_ARTS2
GntR family transcriptional regulator
Transcriptional regulator, GntR family {ECO:0000313|EMBL:ABK02280.1}; TaxID=290399 species="Bacteria; Actinobacteria; Micrococcales; Micrococcaceae; Arthrobacter.;" source="Arthrobacter sp. (strain FB24).;"
scnpilot_solids1_trim150_scaffold_1074_curated_53
Agrococcus pavilionensis, Agrococcus, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(52102..53613)
DNA (1512bp) protein (504aa)
methylmalonate-semialdehyde dehydrogenase n=1 Tax=Microbacterium sp. 292MF RepID=UPI000361CC56
Methylmalonate-semialdehyde dehydrogenase {ECO:0000313|EMBL:ERG63314.1}; TaxID=1330458 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Agrococcus.;" source="Agrococcus pavilionensis RW1.;"
methylmalonate-semialdehyde dehydrogenase
scnpilot_solids1_trim150_scaffold_1074_curated_54
R_Betaproteobacteria_67_19, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

53815..54573
DNA (759bp) protein (253aa)
Putative alcohol dehydrogenase n=1 Tax=Azoarcus sp. KH32C RepID=H0Q5W0_9RHOO
putative alcohol dehydrogenase
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_67_19_curated
scnpilot_solids1_trim150_scaffold_1074_curated_55
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

54588..56219
DNA (1632bp) protein (544aa)
cyclohexanecarboxylate-CoA ligase; K04116 cyclohexanecarboxylate-CoA ligase [EC:6.2.1.-]
hypothetical protein n=1 Tax=Actinomadura flavalba RepID=UPI0003691A0D
Cyclohexanecarboxylate-CoA ligase {ECO:0000313|EMBL:ADU45690.1}; TaxID=652103 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain DX-1).;"
scnpilot_solids1_trim150_scaffold_1074_curated_56
Rhodococcus sp. JVH1, Rhodococcus, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(56245..56748)
DNA (504bp) protein (168aa)
hypothetical protein n=1 Tax=Sporichthya polymorpha RepID=UPI000373A808
MarR family protein {ECO:0000313|EMBL:EJI98088.1}; TaxID=745408 species="Bacteria; Actinobacteria; Corynebacteriales; Nocardiaceae; Rhodococcus.;" source="Rhodococcus sp. JVH1.;"
regulatory protein MarR
scnpilot_solids1_trim150_scaffold_1074_curated_57
Nocardioides luteus, Nocardioides, Propionibacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

56855..57430
DNA (576bp) protein (192aa)
hypothetical protein n=1 Tax=Sporichthya polymorpha RepID=UPI00036EE869
Diguanylate cyclase {ECO:0000313|EMBL:KJR11891.1}; TaxID=1844 species="Bacteria; Actinobacteria; Propionibacteriales; Nocardioidaceae; Nocardioides.;" source="Nocardioides luteus.;"
NADP oxidoreductase, coenzyme F420-dependent; K06988
scnpilot_solids1_trim150_scaffold_1074_curated_58
Patulibacter medicamentivorans, Patulibacter, Solirubrobacterales, Thermoleophilia, Actinobacteria, Bacteria

Not on your lists

comp(57772..58449)
DNA (678bp) protein (226aa)
hypothetical protein n=1 Tax=Actinoplanes globisporus RepID=UPI0003686237
DNA-binding response regulator LuxR family {ECO:0000313|EMBL:EHN10750.1}; TaxID=1097667 species="Bacteria; Actinobacteria; Thermoleophilia; Solirubrobacterales; Patulibacteraceae; Patulibacter.;" source="Patulibacter medicamentivorans.;"
yxjL; transcriptional regulatory protein yxjL
scnpilot_solids1_trim150_scaffold_1074_curated_59
Conexibacter woesei, Conexibacter, Solirubrobacterales, Thermoleophilia, Actinobacteria, Bacteria

Not on your lists

comp(58532..59683)
DNA (1152bp) protein (384aa)
integral membrane sensor signal transduction histidine kinase (EC:2.7.13.3)
Integral membrane sensor signal transduction histidine kinase {ECO:0000313|EMBL:ADB50043.1}; EC=2.7.13.3 {ECO:0000313|EMBL:ADB50043.1};; Flags: Precursor;; TaxID=469383 species="Bacteria; Actinobacteria; Thermoleophilia; Solirubrobacterales; Conexibacteraceae; Conexibacter.;" source="Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 /; ID131577).;"
Integral membrane sensor signal transduction histidine kinase n=1 Tax=Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 / ID131577) RepID=D3F0W7_CONWI
scnpilot_solids1_trim150_scaffold_1074_curated_60
Streptomyces sp. SirexAA-E, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

59887..61041
DNA (1155bp) protein (385aa)
Secreted protein n=1 Tax=Streptomyces sp. SirexAA-E RepID=G2NAB7_9ACTO
secreted protein
Secreted protein {ECO:0000313|EMBL:AEN08195.1}; Flags: Precursor;; TaxID=862751 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces sp. (strain SirexAA-E / ActE).;"
Displaying items 31-60 of 62 in total

View Taxonomy