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scnpilot_solids1_trim150_scaffold_1369_curated

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Displaying 13 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids1_trim150_scaffold_1369_curated_1
Rubrivivax gelatinosus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(1..738)
DNA (738bp) protein (246aa)
Putative amino-acid metabolite efflux pump n=1 Tax=Rubrivivax gelatinosus (strain NBRC 100245 / IL144) RepID=I0HKU4_RUBGI
putative amino-acid metabolite efflux pump; K15268 O-acetylserine/cysteine efflux transporter
Putative amino-acid metabolite efflux pump {ECO:0000313|EMBL:BAL93631.1}; TaxID=983917 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Rubrivivax.;" source="Rubrivivax gelatinosus (strain NBRC 100245 / IL144).;"
scnpilot_solids1_trim150_scaffold_1369_curated_2
Acidovorax ebreus, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(677..2278)
DNA (1602bp) protein (534aa)
purH; bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/imp cyclohydrolase (EC:2.1.2.3); K00602 phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10]
Bifunctional purine biosynthesis protein PurH n=1 Tax=Acidovorax ebreus (strain TPSY) RepID=B9MF71_ACIET
Bifunctional purine biosynthesis protein PurH {ECO:0000256|HAMAP-Rule:MF_00139, ECO:0000256|SAAS:SAAS00010516}; TaxID=535289 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax ebreus (strain TPSY) (Diaphorobacter sp. (strain TPSY)).;"
scnpilot_solids1_trim150_scaffold_1369_curated_3
Acidovorax citrulli, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(2367..2606)
DNA (240bp) protein (80aa)
DNA-binding protein Fis n=2 Tax=Acidovorax RepID=A1TKK5_ACIAC
Fis family transcriptional regulator; K03557 Fis family transcriptional regulator, factor for inversion stimulation protein
DNA-binding protein Fis {ECO:0000313|EMBL:ABM31493.1}; TaxID=397945 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax citrulli (strain AAC00-1) (Acidovorax avenae subsp.; citrulli).;"
scnpilot_solids1_trim150_scaffold_1369_curated_4
Acidovorax ebreus, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(2603..3655)
DNA (1053bp) protein (351aa)
tim-barrel protein, nifr3 family; K05540 tRNA-dihydrouridine synthase B [EC:1.-.-.-]
tRNA-dihydrouridine synthase {ECO:0000256|PIRNR:PIRNR006621}; EC=1.-.-.- {ECO:0000256|PIRNR:PIRNR006621};; TaxID=535289 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax ebreus (strain TPSY) (Diaphorobacter sp. (strain TPSY)).;"
tRNA-dihydrouridine synthase n=1 Tax=Acidovorax ebreus (strain TPSY) RepID=B9MF73_ACIET
scnpilot_solids1_trim150_scaffold_1369_curated_5
Acidovorax avenae, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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3768..4235
DNA (468bp) protein (156aa)
Putative uncharacterized protein n=1 Tax=Acidovorax avenae (strain ATCC 19860 / DSM 7227 / JCM 20985 / NCPPB 1011) RepID=F0Q9F7_ACIAP
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADX44764.1}; TaxID=643561 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax avenae (strain ATCC 19860 / DSM 7227 / JCM 20985 / NCPPB; 1011).;"
scnpilot_solids1_trim150_scaffold_1369_curated_6
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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4379..5362
DNA (984bp) protein (328aa)
hypothetical protein n=1 Tax=Pusillimonas noertemannii RepID=UPI0003181A42
Sulfate and thiosulfate binding protein CysP {ECO:0000313|EMBL:CDM24473.1}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" source="Castellaniella defragrans 65Phen.;"
sulfate ABC transporter substrate-binding protein; K02048 sulfate transport system substrate-binding protein
scnpilot_solids1_trim150_scaffold_1369_curated_7
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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5371..6234
DNA (864bp) protein (288aa)
Sulfate ABC transporter, permease protein CysT n=1 Tax=Pusillimonas sp. (strain T7-7) RepID=F4GS59_PUSST
Sulfate transport system permease protein CysT {ECO:0000313|EMBL:CDM24472.1}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" source="Castellaniella defragrans 65Phen.;"
sulfate ABC transporter permease CysT; K02046 sulfate transport system permease protein
scnpilot_solids1_trim150_scaffold_1369_curated_8
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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6231..7070
DNA (840bp) protein (280aa)
Sulfate ABC transporter permease (Fragment) n=1 Tax=Cupriavidus sp. HPC(L) RepID=V2HTJ8_9BURK
Sulfate transport system permease protein CysW {ECO:0000313|EMBL:CDM24471.1}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" source="Castellaniella defragrans 65Phen.;"
sulfate ABC transporter permease CysW; K02047 sulfate transport system permease protein
scnpilot_solids1_trim150_scaffold_1369_curated_9
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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7067..8149
DNA (1083bp) protein (361aa)
Sulfate/thiosulfate import ATP-binding protein CysA {ECO:0000256|HAMAP-Rule:MF_01701}; EC=3.6.3.25 {ECO:0000256|HAMAP-Rule:MF_01701, ECO:0000313|EMBL:CDM24470.1};; Sulfate-transporting ATPase {ECO:0000256|HAMAP-Rule:MF_01701}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" source="Castellaniella defragrans 65Phen.;"
ABC transporter; K02045 sulfate transport system ATP-binding protein [EC:3.6.3.25]
Sulfate/thiosulfate import ATP-binding protein CysA n=1 Tax=Massilia timonae CCUG 45783 RepID=K9DVX8_9BURK
scnpilot_solids1_trim150_scaffold_1369_curated_10
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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8352..10835
DNA (2484bp) protein (828aa)
nitrite reductase (nad(p)h), large subunit; K00362 nitrite reductase (NAD(P)H) large subunit [EC:1.7.1.4]
Nitrite reductase (NAD(P)H), large subunit n=1 Tax=Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC) RepID=E8TQ84_ALIDB
Nitrite reductase (NAD(P)H), large subunit {ECO:0000313|EMBL:ADV00126.1}; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC).;"
scnpilot_solids1_trim150_scaffold_1369_curated_11
RLO_Burkholderiales_65_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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10921..11304
DNA (384bp) protein (128aa)
nitrite reductase (NAD(P)H) small subunit; K00363 nitrite reductase (NAD(P)H) small subunit [EC:1.7.1.4] id=12553848 bin=BDI species=Acidovorax avenae genus=Acidovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=BDI organism_group=Betaproteobacteria
nitrite reductase (NAD(P)H), small subunit; K00363 nitrite reductase (NAD(P)H) small subunit [EC:1.7.1.4]
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_65_40_curated
scnpilot_solids1_trim150_scaffold_1369_curated_12
Oleiagrimonas soli, Oleiagrimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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11502..13343
DNA (1842bp) protein (614aa)
Sulfite reductase [NADPH] flavoprotein alpha-component {ECO:0000256|PIRNR:PIRNR000207, ECO:0000256|SAAS:SAAS00014038}; Short=SiR-FP {ECO:0000256|PIRNR:PIRNR000207};; EC=1.8.1.2 {ECO:0000256|PIRNR:PIRNR000207, ECO:0000256|SAAS:SAAS00013953};; TaxID=1543381 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Oleiagrimonas.;" source="Oleiagrimonas soli.;"
sulfite reductase flavoprotein; K00380 sulfite reductase (NADPH) flavoprotein alpha-component [EC:1.8.1.2]
Sulfite reductase [NADPH] flavoprotein alpha-component n=1 Tax=Pusillimonas sp. (strain T7-7) RepID=F4GV72_PUSST
scnpilot_solids1_trim150_scaffold_1369_curated_13
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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13416..14909
DNA (1494bp) protein (498aa)
Sulfite reductase [NADPH] hemoprotein beta-component {ECO:0000256|HAMAP-Rule:MF_01540}; Short=SiR-HP {ECO:0000256|HAMAP-Rule:MF_01540};; Short=SiRHP {ECO:0000256|HAMAP-Rule:MF_01540};; EC=1.8.1.2 {ECO:0000256|HAMAP-Rule:MF_01540};; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
sulfite reductase (NADPH) hemoprotein subunit beta; K00381 sulfite reductase (NADPH) hemoprotein beta-component [EC:1.8.1.2]
Sulfite reductase [NADPH] hemoprotein beta-component n=1 Tax=Rhodanobacter sp. 115 RepID=I4W8Z7_9GAMM
Displaying 13 items

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