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scnpilot_solids1_trim150_scaffold_907_curated

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Displaying 16 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids1_trim150_scaffold_907_curated_1
gamma proteobacterium HdN1, Gammaproteobacteria, Proteobacteria, Bacteria

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3..266
DNA (264bp) protein (88aa)
Uncharacterized protein n=1 Tax=gamma proteobacterium HdN1 RepID=E1VKZ7_9GAMM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBL45489.1}; TaxID=83406 species="Bacteria; Proteobacteria; Gammaproteobacteria.;" source="gamma proteobacterium HdN1.;"
scnpilot_solids1_trim150_scaffold_907_curated_2
RLO_Burkholderiales_64_33, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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607..1008
DNA (402bp) protein (134aa)
integrase protein n=1 Tax=Ralstonia solanacearum RepID=UPI00018169D0
phage integrase/recombinase
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_64_33_curated
scnpilot_solids1_trim150_scaffold_907_curated_3
GWA2_Burkholderiales_64_37_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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1216..1710
DNA (495bp) protein (165aa)
MarR family transcriptional regulator n=1 Tax=Acidovorax radicis RepID=UPI0002377181
marR family transcriptional regulator
Tax=GWA2_Burkholderiales_64_37_curated
scnpilot_solids1_trim150_scaffold_907_curated_4
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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2090..3226
DNA (1137bp) protein (379aa)
branched-chain amino acid ABC transporter substrate-binding protein n=1 Tax=Variovorax paradoxus RepID=UPI0003685D4A
ABC-type branched-chain amino acid transport system, periplasmic component {ECO:0000313|EMBL:EJL71588.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
extracellular ligand-binding receptor; K01999 branched-chain amino acid transport system substrate-binding protein
scnpilot_solids1_trim150_scaffold_907_curated_5
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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3308..4348
DNA (1041bp) protein (347aa)
Branched-chain amino acid ABC-type transport system, permease component n=1 Tax=Variovorax sp. CF313 RepID=J3CHB0_9BURK
Branched-chain amino acid ABC-type transport system, permease component {ECO:0000313|EMBL:EJL71589.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
inner-membrane translocator; K01997 branched-chain amino acid transport system permease protein
scnpilot_solids1_trim150_scaffold_907_curated_6
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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4350..6167
DNA (1818bp) protein (606aa)
metal-dependent hydrolase n=1 Tax=Variovorax paradoxus RepID=UPI000369C812
ABC-type branched-chain amino acid transport system, ATPase component {ECO:0000313|EMBL:EJL75310.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
ABC transporter-like protein; K01995 branched-chain amino acid transport system ATP-binding protein; K01998 branched-chain amino acid transport system permease protein
scnpilot_solids1_trim150_scaffold_907_curated_7
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6169..6909
DNA (741bp) protein (247aa)
metal-dependent hydrolase n=1 Tax=Variovorax paradoxus RepID=UPI000370AD34
ABC-type branched-chain amino acid transport system, ATPase component {ECO:0000313|EMBL:EJL75309.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
ABC transporter-like protein; K01996 branched-chain amino acid transport system ATP-binding protein
scnpilot_solids1_trim150_scaffold_907_curated_8
Acidovorax sp. KKS102, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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7106..7693
DNA (588bp) protein (196aa)
Tannase and feruloyl esterase n=1 Tax=Acidovorax sp. KKS102 RepID=K0HM25_9BURK
tannase and feruloyl esterase
Tannase and feruloyl esterase {ECO:0000313|EMBL:AFU43978.1}; TaxID=358220 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. KKS102.;"
scnpilot_solids1_trim150_scaffold_907_curated_9
Janthinobacterium lividum, Janthinobacterium, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(7755..9371)
DNA (1617bp) protein (539aa)
Methyl-accepting chemotaxis sensory transducer n=1 Tax=Acidovorax avenae (strain ATCC 19860 / DSM 7227 / JCM 20985 / NCPPB 1011) RepID=F0Q1D4_ACIAP
Methyl-accepting chemotaxis protein {ECO:0000313|EMBL:EZP38637.1}; TaxID=29581 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Janthinobacterium.;" source="Janthinobacterium lividum.;"
methyl-accepting chemotaxis sensory transducer; K03406 methyl-accepting chemotaxis protein
scnpilot_solids1_trim150_scaffold_907_curated_10
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(9459..11198)
DNA (1740bp) protein (580aa)
Acyl-CoA dehydrogenase {ECO:0000313|EMBL:CDM26053.1}; EC=1.3.8.7 {ECO:0000313|EMBL:CDM26053.1};; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" source="Castellaniella defragrans 65Phen.;"
butyryl-CoA dehydrogenase (EC:1.3.99.2)
Butyryl-CoA dehydrogenase n=1 Tax=Delftia sp. (strain Cs1-4) RepID=F6AWB1_DELSC
scnpilot_solids1_trim150_scaffold_907_curated_11
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11301..13448)
DNA (2148bp) protein (716aa)
Uncharacterized protein n=1 Tax=Delftia acidovorans CCUG 274B RepID=S2XHD5_DELAC
Acetyl-CoA synthetase (ADP-forming) alpha and beta chains, putative {ECO:0000313|EMBL:CDM26055.1}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" source="Castellaniella defragrans 65Phen.;"
CoA-binding domain-containing protein
scnpilot_solids1_trim150_scaffold_907_curated_12
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13493..14335)
DNA (843bp) protein (281aa)
Enoyl-CoA hydratase {ECO:0000313|EMBL:CDM26056.1}; EC=4.2.1.17 {ECO:0000313|EMBL:CDM26056.1};; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" source="Castellaniella defragrans 65Phen.;"
Uncharacterized protein n=2 Tax=Delftia acidovorans RepID=S2WNZ1_DELAC
p-hydroxycinnamoyl CoA hydratase/lyase
scnpilot_solids1_trim150_scaffold_907_curated_13
Thauera sp. SWB20, Thauera, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14514..15965
DNA (1452bp) protein (484aa)
Aldehyde Dehydrogenase n=3 Tax=Thauera RepID=C4ZM77_THASP
aldehyde dehydrogenase
Aldehyde dehydrogenase family protein {ECO:0000313|EMBL:KIN89378.1}; TaxID=1572758 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Thauera.;" source="Thauera sp. SWB20.;"
scnpilot_solids1_trim150_scaffold_907_curated_14
BJP_08E140C01_Burkholderiales_65_30, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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16077..16973
DNA (897bp) protein (299aa)
Transcriptional regulator, LysR family id=1261969 bin=GWE1_Burkholderiales_65_30 species=Polaromonas naphthalenivorans genus=Polaromonas taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_Burkholderiales_65_30 organism_group=Betaproteobacteria
LysR family transcriptional regulator
Tax=BJP_08E140C01_Burkholderiales_65_30
scnpilot_solids1_trim150_scaffold_907_curated_15
RLO_Burkholderiales_65_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17349..17447
DNA (99bp) protein (33aa)
Integrase family protein n=1 Tax=Leptothrix cholodnii (strain ATCC 51168 / LMG 8142 / SP-6) RepID=B1Y171_LEPCP
integrase family protein
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_65_40_curated
scnpilot_solids1_trim150_scaffold_907_curated_16
GWA2_Burkholderiales_64_37_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(18988..19074)
DNA (87bp) protein (29aa)
50S ribosomal protein L15 n=1 Tax=Acidovorax sp. KKS102 RepID=K0I6A2_9BURK
50S ribosomal protein L15
Tax=GWA2_Burkholderiales_64_37_curated
Displaying 16 items

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