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scnpilot_solids1_trim150_scaffold_758_curated

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Displaying items 1-30 of 46 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids1_trim150_scaffold_758_curated_1
Acidovorax sp. JS42, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2..325)
DNA (324bp) protein (108aa)
Putative signal transduction protein n=1 Tax=Acidovorax sp. (strain JS42) RepID=A1W6M3_ACISJ
signal transduction protein
Putative signal transduction protein {ECO:0000313|EMBL:ABM41898.1}; TaxID=232721 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. (strain JS42).;"
scnpilot_solids1_trim150_scaffold_758_curated_2
Ramlibacter tataouinensis, Ramlibacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(567..794)
DNA (228bp) protein (76aa)
Uncharacterized protein n=1 Tax=Ramlibacter tataouinensis (strain ATCC BAA-407 / DSM 14655 / LMG 21543 / TTB310) RepID=F5XXC3_RAMTT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEG94258.1}; TaxID=365046 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Ramlibacter.;" source="Ramlibacter tataouinensis (strain ATCC BAA-407 / DSM 14655 / LMG 21543; / TTB310).;"
scnpilot_solids1_trim150_scaffold_758_curated_3
Acidovorax ebreus, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(791..1360)
DNA (570bp) protein (190aa)
NUDIX hydrolase n=1 Tax=Acidovorax ebreus (strain TPSY) RepID=B9MCB7_ACIET
nudix hydrolase
NUDIX hydrolase {ECO:0000313|EMBL:ACM33822.1}; TaxID=535289 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax ebreus (strain TPSY) (Diaphorobacter sp. (strain TPSY)).;"
scnpilot_solids1_trim150_scaffold_758_curated_4
Acidovorax ebreus, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1366..2271)
DNA (906bp) protein (302aa)
cysM; cysteine synthase b; K12339 cysteine synthase B [EC:2.5.1.47]
Cysteine synthase {ECO:0000256|RuleBase:RU003985}; EC=2.5.1.47 {ECO:0000256|RuleBase:RU003985};; TaxID=535289 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax ebreus (strain TPSY) (Diaphorobacter sp. (strain TPSY)).;"
Cysteine synthase B n=1 Tax=Acidovorax ebreus (strain TPSY) RepID=B9MCB8_ACIET
scnpilot_solids1_trim150_scaffold_758_curated_5
Comamonas testosteroni, Comamonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2882..3139)
DNA (258bp) protein (86aa)
Uncharacterized protein n=1 Tax=Ralstonia solanacearum SD54 RepID=V4ZPT8_RALSL
Conjugal transfer protein {ECO:0000313|EMBL:KGH09987.1}; TaxID=285 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Comamonas.;" source="Comamonas testosteroni (Pseudomonas testosteroni).;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_758_curated_6
Pseudomonas fluorescens, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3136..4428)
DNA (1293bp) protein (431aa)
TrbI-like protein n=1 Tax=Pseudomonas aeruginosa X13273 RepID=U8YQL3_PSEAI
Conjugal transfer protein TrbI {ECO:0000313|EMBL:KGE69514.1}; TaxID=1324332 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas fluorescens LMG 5329.;"
conjugation trbi family protein
scnpilot_solids1_trim150_scaffold_758_curated_7
Burkholderia mallei, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4431..5420)
DNA (990bp) protein (330aa)
Conjugative transfer protein TrbG n=1 Tax=Stenotrophomonas maltophilia EPM1 RepID=M3EZQ9_STEMA
P-type conjugative transfer protein TrbG {ECO:0000313|EMBL:KGC11568.1}; TaxID=13373 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia; pseudomallei group.;" source="Burkholderia mallei (Pseudomonas mallei).;"
TrbG-like protein
scnpilot_solids1_trim150_scaffold_758_curated_8
Pseudomonas fluorescens, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5417..6121)
DNA (705bp) protein (235aa)
Conjugal transfer protein TrbF n=3 Tax=Pseudomonas aeruginosa RepID=U8EG63_PSEAI
Conjugal transfer protein TrbF {ECO:0000313|EMBL:KGE69516.1}; TaxID=1324332 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas fluorescens LMG 5329.;"
conjugal transfer protein TrbF; K03200 type IV secretion system protein VirB5
scnpilot_solids1_trim150_scaffold_758_curated_9
Burkholderia pseudomallei, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6134..7309)
DNA (1176bp) protein (392aa)
P-type conjugative transfer protein TrbL n=1 Tax=Burkholderia pseudomallei MSHR346 RepID=C4KSG7_BURPE
trbL; P-type conjugative transfer protein TrbL; K07344 type IV secretion system protein TrbL
P-type conjugative transfer protein TrbL {ECO:0000313|EMBL:ACQ96415.1}; TaxID=536230 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia; pseudomallei group.;" source="Burkholderia pseudomallei MSHR346.;"
scnpilot_solids1_trim150_scaffold_758_curated_10
Pseudomonas monteilii, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7306..7602)
DNA (297bp) protein (99aa)
UPI0003D6881E related cluster n=1 Tax=unknown RepID=UPI0003D6881E
Uncharacterized protein {ECO:0000313|EMBL:AHC89224.1}; TaxID=1435058 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas monteilii SB3101.;"
lipoprotein
scnpilot_solids1_trim150_scaffold_758_curated_11
Pseudomonas fluorescens, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7614..8342)
DNA (729bp) protein (243aa)
P-type conjugative transfer protein TrbJ n=3 Tax=Pseudomonas aeruginosa RepID=U8EGU6_PSEAI
Conjugal transfer protein TrbJ {ECO:0000313|EMBL:KGE69519.1}; TaxID=1324332 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas fluorescens LMG 5329.;"
P-type conjugative transfer protein TrbJ
scnpilot_solids1_trim150_scaffold_758_curated_12
Burkholderia mallei, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8339..10801)
DNA (2463bp) protein (821aa)
Conjugal transfer protein TrbE n=1 Tax=Pseudomonas aeruginosa VRFPA05 RepID=V4UXD4_PSEAI
CagE, TrbE, VirB , component of type IV transporter system family protein {ECO:0000313|EMBL:KGC11472.1}; TaxID=13373 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia; pseudomallei group.;" source="Burkholderia mallei (Pseudomonas mallei).;"
ATPase; K03199 type IV secretion system protein VirB4
scnpilot_solids1_trim150_scaffold_758_curated_13
Xanthomonas campestris, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10817..11086)
DNA (270bp) protein (90aa)
Uncharacterized protein n=1 Tax=Pseudomonas aeruginosa CF614 RepID=U8BKL0_PSEAI
Conjugal transfer protein TrbD {ECO:0000313|EMBL:AKC78380.1}; TaxID=339 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas campestris.;"
conjugal transfer protein; K03198 type IV secretion system protein VirB3
scnpilot_solids1_trim150_scaffold_758_curated_14
Alcanivorax dieselolei, Alcanivorax, Oceanospirillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11083..11466)
DNA (384bp) protein (128aa)
Conjugal transfer protein TrbC n=1 Tax=Alcanivorax dieselolei (strain DSM 16502 / CGMCC 1.3690 / B-5) RepID=K0CHG5_ALCDB
conjugal transfer protein Trbc
Conjugal transfer protein TrbC {ECO:0000313|EMBL:AFT71066.1}; TaxID=930169 species="Bacteria; Proteobacteria; Gammaproteobacteria; Oceanospirillales; Alcanivoracaceae; Alcanivorax.;" source="Alcanivorax dieselolei (strain DSM 16502 / CGMCC 1.3690 / B-5).;"
scnpilot_solids1_trim150_scaffold_758_curated_15
Burkholderia multivorans, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11463..12485)
DNA (1023bp) protein (341aa)
P-type conjugative transfer ATPase TrbB n=2 Tax=Burkholderia multivorans RepID=B9BUE4_9BURK
P-type conjugative transfer ATPase TrbB {ECO:0000313|EMBL:EEE05441.1}; TaxID=513052 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia; Burkholderia cepacia complex.;" source="Burkholderia multivorans CGD2.;"
P-type conjugative transfer ATPase TrbB; K03196 type IV secretion system protein VirB11
scnpilot_solids1_trim150_scaffold_758_curated_16
Pseudomonas monteilii, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12482..12946)
DNA (465bp) protein (155aa)
Uncharacterized protein n=2 Tax=Pseudomonas aeruginosa RepID=U8EGU1_PSEAI
CopG family transcripitonal regulator {ECO:0000313|EMBL:AHC89230.1}; TaxID=1435058 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas monteilii SB3101.;"
CopG domain-containing protein
scnpilot_solids1_trim150_scaffold_758_curated_17
Pseudomonas fluorescens, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12943..14946)
DNA (2004bp) protein (668aa)
Conjugal transfer coupling protein TraG n=1 Tax=Pseudomonas aeruginosa X13273 RepID=U8YUQ6_PSEAI
Conjugal transfer protein TraG {ECO:0000313|EMBL:KGE69525.1}; TaxID=1324332 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas fluorescens LMG 5329.;"
conjugal transfer protein TraG; K03205 type IV secretion system protein VirD4
scnpilot_solids1_trim150_scaffold_758_curated_18
Polaromonas naphthalenivorans, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15486..16397)
DNA (912bp) protein (304aa)
Transcriptional regulator, LysR family n=1 Tax=Polaromonas naphthalenivorans (strain CJ2) RepID=A1VUZ6_POLNA
LysR family transcriptional regulator
Transcriptional regulator, LysR family {ECO:0000313|EMBL:ABM39474.1}; TaxID=365044 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas naphthalenivorans (strain CJ2).;"
scnpilot_solids1_trim150_scaffold_758_curated_19
Burkholderia fungorum, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16772..18004)
DNA (1233bp) protein (411aa)
Major facilitator transporter n=1 Tax=Rhodanobacter sp. 115 RepID=I4VHX4_9GAMM
Major Facilitator Superfamily protein {ECO:0000313|EMBL:AJZ56350.1}; TaxID=134537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia fungorum.;"
major facilitator transporter
scnpilot_solids1_trim150_scaffold_758_curated_20
Burkholderia fungorum, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18043..18738)
DNA (696bp) protein (232aa)
Putative cytochrome c biogenesis protein n=1 Tax=Rhodanobacter sp. 115 RepID=I4VHX3_9GAMM
Cytochrome C biogenesis transmembrane region family protein {ECO:0000313|EMBL:AJZ56257.1}; TaxID=134537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia fungorum.;"
cytochrome c biogenesis protein, transmembrane region
scnpilot_solids1_trim150_scaffold_758_curated_21
Burkholderia fungorum, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18735..19040)
DNA (306bp) protein (102aa)
Thioredoxin/glutaredoxin n=1 Tax=Rhodanobacter sp. 115 RepID=I4VHX2_9GAMM
Glutaredoxin family protein {ECO:0000313|EMBL:AJZ56031.1}; TaxID=134537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia fungorum.;"
thioredoxin/glutaredoxin
scnpilot_solids1_trim150_scaffold_758_curated_22
Burkholderia fungorum, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19056..19610)
DNA (555bp) protein (185aa)
MerR family transcriptional regulator n=1 Tax=Rhodanobacter sp. 115 RepID=I4VHX1_9GAMM
MerR regulatory family protein {ECO:0000313|EMBL:AJZ56316.1}; TaxID=134537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia fungorum.;"
putative MerR family regulatory protein
scnpilot_solids1_trim150_scaffold_758_curated_23
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19705..19932)
DNA (228bp) protein (76aa)
Uncharacterized protein n=1 Tax=Rhodanobacter sp. 115 RepID=I4VHX0_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL86811.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
scnpilot_solids1_trim150_scaffold_758_curated_24
Burkholderia fungorum, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20016..22472)
DNA (2457bp) protein (819aa)
Copper-translocating P-type ATPase {ECO:0000313|EMBL:AJZ56232.1}; EC=3.6.3.4 {ECO:0000313|EMBL:AJZ56232.1};; TaxID=134537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia fungorum.;"
Heavy metal translocating P-type ATPase n=1 Tax=Rhodanobacter sp. 115 RepID=I4VHW9_9GAMM
heavy metal translocating P-type ATPase
scnpilot_solids1_trim150_scaffold_758_curated_25
Burkholderia multivorans, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23075..25036)
DNA (1962bp) protein (654aa)
Type IV secretory pathway VirD2 component n=2 Tax=Burkholderia multivorans RepID=B9BUF8_9BURK
Type IV secretory pathway VirD2 component {ECO:0000313|EMBL:EEE05455.1}; TaxID=513052 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia; Burkholderia cepacia complex.;" source="Burkholderia multivorans CGD2.;"
type IV secretory pathway VirD2 component
scnpilot_solids1_trim150_scaffold_758_curated_26
Alcanivorax dieselolei, Alcanivorax, Oceanospirillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25033..25383)
DNA (351bp) protein (117aa)
Uncharacterized protein n=1 Tax=Alcanivorax dieselolei (strain DSM 16502 / CGMCC 1.3690 / B-5) RepID=K0CHC3_ALCDB
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFT71031.1}; TaxID=930169 species="Bacteria; Proteobacteria; Gammaproteobacteria; Oceanospirillales; Alcanivoracaceae; Alcanivorax.;" source="Alcanivorax dieselolei (strain DSM 16502 / CGMCC 1.3690 / B-5).;"
scnpilot_solids1_trim150_scaffold_758_curated_27
Burkholderia gladioli, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25380..25967)
DNA (588bp) protein (196aa)
peptidase n=1 Tax=Ralstonia solanacearum RepID=UPI0002E0DA2A
Peptidase {ECO:0000313|EMBL:KGE06261.1}; TaxID=28095 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia gladioli (Pseudomonas marginata) (Phytomonas marginata).;"
traF; plasmid conjugal transfer transmembrane protein
scnpilot_solids1_trim150_scaffold_758_curated_28
Burkholderia multivorans, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25964..26509)
DNA (546bp) protein (182aa)
Uncharacterized protein n=2 Tax=Burkholderia multivorans RepID=B9BUG1_9BURK
Uncharacterized protein {ECO:0000313|EMBL:EEE05458.1}; TaxID=513052 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia; Burkholderia cepacia complex.;" source="Burkholderia multivorans CGD2.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_758_curated_29
Pseudomonas fluorescens, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26506..26757)
DNA (252bp) protein (84aa)
Uncharacterized protein n=1 Tax=Stenotrophomonas maltophilia EPM1 RepID=M3G9U7_STEMA
ParB partition protein {ECO:0000313|EMBL:KGE69536.1}; TaxID=1324332 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas fluorescens LMG 5329.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_758_curated_30
Burkholderia cenocepacia, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26754..27392)
DNA (639bp) protein (213aa)
Uncharacterized protein n=1 Tax=Pseudomonas aeruginosa str. Stone 130 RepID=N2BQE5_PSEAI
CobQ/CobB/MinD/ParA nucleotide binding domain protein {ECO:0000313|EMBL:AIO33598.1}; TaxID=95486 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia; Burkholderia cepacia complex.;" source="Burkholderia cenocepacia.;"
cobyrinic acid ac-diamide synthase; K03496 chromosome partitioning protein
Displaying items 1-30 of 46 in total

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