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scnpilot_solids1_trim150_scaffold_55_curated

Search features with annotation key words

Displaying items 1-30 of 107 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids1_trim150_scaffold_55_curated_1
unknown

Not on your lists

1..303
DNA (303bp) protein (101aa)

This feature has no annotations

scnpilot_solids1_trim150_scaffold_55_curated_2
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(388..2967)
DNA (2580bp) protein (860aa)
Cyanophycin synthase {ECO:0000313|EMBL:CDM22866.1}; EC=6.3.2.29 {ECO:0000313|EMBL:CDM22866.1};; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" source="Castellaniella defragrans 65Phen.;"
cphA1; cyanophycin synthetase (EC:6.-.-.-); K03802 cyanophycin synthetase [EC:6.-.-.-]
Cyanophycin synthetase n=1 Tax=Cupriavidus sp. HPC(L) RepID=V2HIH4_9BURK
scnpilot_solids1_trim150_scaffold_55_curated_3
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2974..5121)
DNA (2148bp) protein (716aa)
Cyanophycin synthase {ECO:0000313|EMBL:CDM22865.1}; EC=6.3.2.29 {ECO:0000313|EMBL:CDM22865.1};; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" source="Castellaniella defragrans 65Phen.;"
cyanophycin synthetase (EC:6.3.2.-); K03802 cyanophycin synthetase [EC:6.-.-.-]
cyanophycin synthetase n=1 Tax=Cupriavidus sp. WS RepID=UPI00036D3F41
scnpilot_solids1_trim150_scaffold_55_curated_4
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5357..7606
DNA (2250bp) protein (750aa)
ABC transporter n=1 Tax=Cupriavidus sp. HPC(L) RepID=V2H9S8_9BURK
Lipid A export ATP-binding/permease protein MsbA {ECO:0000313|EMBL:CDM22864.1}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" source="Castellaniella defragrans 65Phen.;"
ABC transporter
scnpilot_solids1_trim150_scaffold_55_curated_5
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7590..8150
DNA (561bp) protein (187aa)
hypothetical protein n=1 Tax=Herbaspirillum sp. JC206 RepID=UPI0002F3FA12
Uncharacterized protein {ECO:0000313|EMBL:CDM22863.1}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" source="Castellaniella defragrans 65Phen.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_55_curated_6
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8154..9317)
DNA (1164bp) protein (388aa)
Uncharacterized protein n=1 Tax=Polaromonas sp. CF318 RepID=J2UG70_9BURK
Putative lipoprotein {ECO:0000313|EMBL:CDM22862.1}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" source="Castellaniella defragrans 65Phen.;"
lipoprotein
scnpilot_solids1_trim150_scaffold_55_curated_7
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9422..9610)
DNA (189bp) protein (63aa)
Uncharacterized protein n=1 Tax=Alcaligenes faecalis subsp. faecalis NCIB 8687 RepID=J0B9C9_ALCFA
Putative membrane protein {ECO:0000313|EMBL:CDM26076.1}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" source="Castellaniella defragrans 65Phen.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_55_curated_8
Bordetella pertussis, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9762..10091)
DNA (330bp) protein (110aa)
UPF0339 protein BPP0444 n=39 Tax=Bordetella RepID=Y444_BORPA
hypothetical protein
UPF0339 protein BP0521; TaxID=257313 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetella pertussis (strain Tohama I / ATCC BAA-589 / NCTC 13251).;"
scnpilot_solids1_trim150_scaffold_55_curated_9
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10251..11234
DNA (984bp) protein (328aa)
Uncharacterized protein n=1 Tax=Achromobacter piechaudii HLE RepID=J4J7U5_9BURK
Putative membrane protein {ECO:0000313|EMBL:CDM25927.1}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" source="Castellaniella defragrans 65Phen.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_55_curated_10
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11257..11811)
DNA (555bp) protein (185aa)
Uncharacterized protein n=1 Tax=Herbaspirillum sp. CF444 RepID=J2L8Q8_9BURK
Uncharacterized protein {ECO:0000313|EMBL:CDM26075.1}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" source="Castellaniella defragrans 65Phen.;"
hypothetical protein; K09705 hypothetical protein
scnpilot_solids1_trim150_scaffold_55_curated_11
Rhizobium gallicum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12216..13043)
DNA (828bp) protein (276aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI000366BBBF
Uncharacterized protein {ECO:0000313|EMBL:AJD42374.1}; TaxID=1418105 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium gallicum bv. gallicum R602.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_55_curated_12
Bordetella hinzii, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13241..15118)
DNA (1878bp) protein (626aa)
acyltransferase 3 n=1 Tax=Ruegeria conchae RepID=UPI0002379A1B
Acyltransferase {ECO:0000313|EMBL:KCB41828.1}; TaxID=1331257 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetella hinzii 5132.;"
acyltransferase 3
scnpilot_solids1_trim150_scaffold_55_curated_13
Pseudomonas sp. GM24, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15305..15580
DNA (276bp) protein (92aa)
hypothetical protein; K07154 serine/threonine-protein kinase HipA [EC:2.7.11.1]
HipA domain-containing protein n=2 Tax=Pseudomonas RepID=J2MD86_9PSED
HipA domain-containing protein {ECO:0000313|EMBL:EJM41156.1}; TaxID=1144326 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. GM24.;"
scnpilot_solids1_trim150_scaffold_55_curated_14
Chlorobaculum tepidum, Chlorobaculum, Chlorobiales, Chlorobia, Chlorobi, Bacteria

Not on your lists

comp(15649..16170)
DNA (522bp) protein (174aa)
Uncharacterized protein n=1 Tax=Aeromonas veronii AER39 RepID=K1IQT6_9GAMM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AAM73469.1}; TaxID=194439 species="Bacteria; Chlorobi; Chlorobia; Chlorobiales; Chlorobiaceae; Chlorobaculum.;" source="Chlorobium tepidum (strain ATCC 49652 / DSM 12025 / NBRC 103806 /; TLS).;"
scnpilot_solids1_trim150_scaffold_55_curated_15
Delftia sp. RIT313, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16154..17293)
DNA (1140bp) protein (380aa)
Uncharacterized protein n=1 Tax=Aeromonas veronii AER39 RepID=K1I6R5_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EZP56398.1}; TaxID=1468410 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia sp. RIT313.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_55_curated_16
Alcaligenes faecalis, Alcaligenes, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17454..18743)
DNA (1290bp) protein (430aa)
Undecaprenyl-galactosyl transferase n=1 Tax=Alcaligenes faecalis subsp. faecalis NCIB 8687 RepID=J0B1U6_ALCFA
Undecaprenyl-galactosyl transferase {ECO:0000313|EMBL:EJC63027.1}; TaxID=1156918 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Alcaligenes.;" source="Alcaligenes faecalis subsp. faecalis NCIB 8687.;"
LPS sugar transferase
scnpilot_solids1_trim150_scaffold_55_curated_17
CG_Rhodof_02, Rhodoferax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18745..19869)
DNA (1125bp) protein (375aa)
Putative galactosyltransferase n=1 Tax=Alcaligenes faecalis subsp. faecalis NCIB 8687 RepID=J0UQX5_ALCFA
glycosyl transferase
Tax=CG_Rhodof_02
scnpilot_solids1_trim150_scaffold_55_curated_18
Alcaligenes faecalis, Alcaligenes, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19872..20681)
DNA (810bp) protein (270aa)
Glycosyl transferase family protein n=1 Tax=Alcaligenes faecalis subsp. faecalis NCIB 8687 RepID=J0JGY4_ALCFA
Glycosyl transferase family protein {ECO:0000313|EMBL:EJC63024.1}; TaxID=1156918 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Alcaligenes.;" source="Alcaligenes faecalis subsp. faecalis NCIB 8687.;"
kfoC_1; Chondroitin polymerase
scnpilot_solids1_trim150_scaffold_55_curated_19
Alcaligenes faecalis, Alcaligenes, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20675..21769)
DNA (1095bp) protein (365aa)
Glycosyltransferase n=1 Tax=Alcaligenes faecalis subsp. faecalis NCIB 8687 RepID=J0BA37_ALCFA
Glycosyltransferase {ECO:0000313|EMBL:EJC63025.1}; TaxID=1156918 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Alcaligenes.;" source="Alcaligenes faecalis subsp. faecalis NCIB 8687.;"
glycosyltransferase
scnpilot_solids1_trim150_scaffold_55_curated_20
Alcaligenes faecalis, Alcaligenes, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21766..23067)
DNA (1302bp) protein (434aa)
Polysaccharide biosynthesis protein n=1 Tax=Alcaligenes faecalis subsp. faecalis NCIB 8687 RepID=J0UPR8_ALCFA
Polysaccharide biosynthesis protein {ECO:0000313|EMBL:EJC63026.1}; TaxID=1156918 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Alcaligenes.;" source="Alcaligenes faecalis subsp. faecalis NCIB 8687.;"
membrane protein involved in the export of O-antigen and teichoic acid
scnpilot_solids1_trim150_scaffold_55_curated_21
unknown

Not on your lists

comp(23064..24347)
DNA (1284bp) protein (428aa)

This feature has no annotations

scnpilot_solids1_trim150_scaffold_55_curated_22
Achromobacter xylosoxidans, Achromobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24582..26408)
DNA (1827bp) protein (609aa)
Polysaccharide biosynthesis protein n=1 Tax=Achromobacter xylosoxidans (strain A8) RepID=E3HQG0_ACHXA
Multidrug MFS transporter {ECO:0000313|EMBL:KGY27827.1}; TaxID=85698 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Achromobacter.;" source="Alcaligenes xylosoxydans xylosoxydans (Achromobacter xylosoxidans).;"
polysaccharide biosynthesis protein
scnpilot_solids1_trim150_scaffold_55_curated_23
Pseudomonas stutzeri, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26418..27593)
DNA (1176bp) protein (392aa)
Putative aminotransferase n=1 Tax=Pseudomonas stutzeri TS44 RepID=I4JHJ9_PSEST
Putative aminotransferase {ECO:0000313|EMBL:EIK51939.1}; TaxID=477228 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas stutzeri TS44.;"
DegT/DnrJ/EryC1/StrS aminotransferase family protein
scnpilot_solids1_trim150_scaffold_55_curated_24
Comamonas testosteroni, Comamonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28238..28834)
DNA (597bp) protein (199aa)
undecaprenyl-phosphate galactose phosphotransferase (EC:2.7.8.6)
Undecaprenyl-phosphate galactose phosphotransferase n=1 Tax=Comamonas testosteroni ATCC 11996 RepID=H1RX55_COMTE
Undecaprenyl-phosphate galactose phosphotransferase {ECO:0000313|EMBL:EHN63231.1}; TaxID=1009852 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Comamonas.;" source="Comamonas testosteroni ATCC 11996.;"
scnpilot_solids1_trim150_scaffold_55_curated_25
Truepera radiovictrix, Truepera, Deinococcales, Deinococci, Deinococcus-Thermus, Bacteria

Not on your lists

comp(28933..30150)
DNA (1218bp) protein (406aa)
Glycosyl transferase group 1 n=1 Tax=Truepera radiovictrix (strain DSM 17093 / CIP 108686 / LMG 22925 / RQ-24) RepID=D7CTL3_TRURR
glycosyl transferase group 1 protein
Glycosyl transferase group 1 {ECO:0000313|EMBL:ADI13870.1}; TaxID=649638 species="Bacteria; Deinococcus-Thermus; Deinococci; Deinococcales; Trueperaceae; Truepera.;" source="Truepera radiovictrix (strain DSM 17093 / CIP 108686 / LMG 22925 /; RQ-24).;"
scnpilot_solids1_trim150_scaffold_55_curated_26
Marinobacter manganoxydans, Marinobacter, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30147..31262)
DNA (1116bp) protein (372aa)
Glycosyl transferase group 1 n=1 Tax=Marinobacter manganoxydans MnI7-9 RepID=G6YP60_9ALTE
Glycosyl transferase group 1 {ECO:0000313|EMBL:EHJ06122.1}; TaxID=1094979 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Alteromonadaceae; Marinobacter.;" source="Marinobacter manganoxydans MnI7-9.;"
putative glycosyltransferase
scnpilot_solids1_trim150_scaffold_55_curated_27
Pseudomonas resinovorans, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(31273..31902)
DNA (630bp) protein (210aa)
Uncharacterized protein n=1 Tax=Pseudomonas resinovorans NBRC 106553 RepID=S6APT0_PSERE
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAN47713.1}; TaxID=1245471 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas resinovorans NBRC 106553.;"
scnpilot_solids1_trim150_scaffold_55_curated_28
unknown

Not on your lists

comp(32704..33690)
DNA (987bp) protein (329aa)
Uncharacterized protein n=1 Tax=Holophaga foetida DSM 6591 RepID=H1P4F5_9BACT
scnpilot_solids1_trim150_scaffold_55_curated_29
Methanosarcina barkeri, Methanosarcina, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(33680..34891)
DNA (1212bp) protein (404aa)
O-antigen flippase Wzx n=1 Tax=Methanosarcina mazei Tuc01 RepID=M1Q8S6_METMZ
O-antigen flippase Wzx {ECO:0000313|EMBL:AKB82184.1}; TaxID=1434107 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanosarcina.;" source="Methanosarcina barkeri 3.;"
O-antigen flippase Wzx
scnpilot_solids1_trim150_scaffold_55_curated_30
unknown

Not on your lists

comp(35014..35811)
DNA (798bp) protein (266aa)

This feature has no annotations

Displaying items 1-30 of 107 in total

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