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scnpilot_solids1_trim150_scaffold_3_curated

Search features with annotation key words

Displaying items 1-30 of 440 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids1_trim150_scaffold_3_curated_1
unknown

Not on your lists

comp(241..342)
DNA (102bp) protein (34aa)

This feature has no annotations

scnpilot_solids1_trim150_scaffold_3_curated_2
Providencia rettgeri, Providencia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

480..1532
DNA (1053bp) protein (351aa)
Tat pathway signal sequence domain protein n=1 Tax=Providencia rettgeri DSM 1131 RepID=D4C234_PRORE
Tat pathway signal sequence domain protein {ECO:0000313|EMBL:EFE52655.1}; TaxID=521000 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Providencia.;" source="Providencia rettgeri DSM 1131.;"
peptidase S15; K06889
scnpilot_solids1_trim150_scaffold_3_curated_3
Enterobacter cloacae, Enterobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1652..2812
DNA (1161bp) protein (387aa)
Putative transporter n=2 Tax=Serratia marcescens RepID=L7ZQW0_SERMA
Transcriptional regulator {ECO:0000313|EMBL:KJO95924.1}; TaxID=550 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Enterobacter; Enterobacter cloacae complex.;" source="Enterobacter cloacae.;"
nepI; putative transporter
scnpilot_solids1_trim150_scaffold_3_curated_4
Delftia sp. RIT313, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2921..3970
DNA (1050bp) protein (350aa)
mannitol dehydrogenase (EC:1.1.1.255); K13979 uncharacterized zinc-type alcohol dehydrogenase-like protein [EC:1.-.-.-]
Mannitol dehydrogenase {ECO:0000313|EMBL:EZP55268.1}; EC=1.1.1.255 {ECO:0000313|EMBL:EZP55268.1};; TaxID=1468410 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia sp. RIT313.;"
Mannitol dehydrogenase n=1 Tax=Delftia sp. (strain Cs1-4) RepID=F6AS11_DELSC
scnpilot_solids1_trim150_scaffold_3_curated_5
Bordetella petrii, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4042..4791)
DNA (750bp) protein (250aa)
membrane protein n=1 Tax=Pseudomonas sp. 313 RepID=UPI0003034080
hypothetical protein
Putative membrane protein {ECO:0000313|EMBL:CAP41404.1}; TaxID=340100 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448).;"
scnpilot_solids1_trim150_scaffold_3_curated_6
Acidovorax sp. JS42, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4791..6980)
DNA (2190bp) protein (730aa)
Conjugal transfer protein TraG n=3 Tax=Pseudomonas aeruginosa RepID=V4V8K4_PSEAI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABM41498.1}; TaxID=232721 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. (strain JS42).;"
scnpilot_solids1_trim150_scaffold_3_curated_7
R_Burkholderiales_64_960, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6985..7491)
DNA (507bp) protein (169aa)
Uncharacterized protein n=4 Tax=Proteobacteria RepID=E3HKR4_ACHXA
hypothetical protein
Tax=RIFCSPHIGHO2_01_FULL_Burkholderiales_64_960_curated
scnpilot_solids1_trim150_scaffold_3_curated_8
Xanthomonas citri, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7524..8129)
DNA (606bp) protein (202aa)
Lytic transglycosylase n=1 Tax=Pseudomonas aeruginosa NCGM2.S1 RepID=G4LMU4_PSEAI
Uncharacterized protein {ECO:0000313|EMBL:CEH90872.1}; TaxID=434928 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas citri pv. citri.;"
lytic transglycosylase
scnpilot_solids1_trim150_scaffold_3_curated_9
Achromobacter xylosoxidans, Achromobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8111..8842)
DNA (732bp) protein (244aa)
UPI0003D61C01 related cluster n=1 Tax=unknown RepID=UPI0003D61C01
Integrating conjugative element protein%2C PFL_4693 family {ECO:0000313|EMBL:CKG95556.1}; TaxID=85698 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Achromobacter.;" source="Alcaligenes xylosoxydans xylosoxydans (Achromobacter xylosoxidans).;"
putative secreted protein
scnpilot_solids1_trim150_scaffold_3_curated_10
R_Burkholderiales_64_960, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8855..9508)
DNA (654bp) protein (218aa)
Uncharacterized protein n=2 Tax=Alcaligenes RepID=M5IZ46_9BURK
hypothetical protein
Tax=RIFCSPHIGHO2_01_FULL_Burkholderiales_64_960_curated
scnpilot_solids1_trim150_scaffold_3_curated_11
Acidovorax sp. JS42, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9505..10071)
DNA (567bp) protein (189aa)
Integrating conjugative element protein PilL, PFGI-1 class n=2 Tax=Proteobacteria RepID=U9KYL9_PSEAI
hypothetical protein; K02487 type IV pili sensor histidine kinase and response regulator
Putative secreted protein {ECO:0000313|EMBL:ABM41503.1}; Flags: Precursor;; TaxID=232721 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. (strain JS42).;"
scnpilot_solids1_trim150_scaffold_3_curated_12
Ramlibacter tataouinensis, Ramlibacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10308..11006
DNA (699bp) protein (233aa)
Uncharacterized protein n=1 Tax=Ramlibacter tataouinensis (strain ATCC BAA-407 / DSM 14655 / LMG 21543 / TTB310) RepID=F5Y455_RAMTT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEG92520.1}; TaxID=365046 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Ramlibacter.;" source="Ramlibacter tataouinensis (strain ATCC BAA-407 / DSM 14655 / LMG 21543; / TTB310).;"
scnpilot_solids1_trim150_scaffold_3_curated_13
Achromobacter xylosoxidans, Achromobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11014..13287)
DNA (2274bp) protein (758aa)
Uncharacterized protein n=9 Tax=Proteobacteria RepID=B7V545_PSEA8
Superfamily II DNA/RNA helicases, SNF2 family {ECO:0000313|EMBL:CCH04949.1}; TaxID=1167634 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Achromobacter.;" source="Achromobacter xylosoxidans NH44784-1996.;"
Superfamily II DNA/RNA helicases, SNF2 family
scnpilot_solids1_trim150_scaffold_3_curated_14
Bordetella petrii, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13430..13735)
DNA (306bp) protein (102aa)
Uncharacterized protein n=5 Tax=Proteobacteria RepID=A9IAW2_BORPD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CAP44636.1}; TaxID=340100 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448).;"
scnpilot_solids1_trim150_scaffold_3_curated_15
Stenotrophomonas sp. SKA14, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13839..14150)
DNA (312bp) protein (104aa)
Uncharacterized protein n=1 Tax=Pseudomonas aeruginosa BWHPSA009 RepID=U9N301_PSEAI
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:EED37610.1}; TaxID=391601 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas sp. SKA14.;"
scnpilot_solids1_trim150_scaffold_3_curated_16
Ralstonia sp. AU12-08, Ralstonia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14254..15363)
DNA (1110bp) protein (370aa)
Uncharacterized protein n=25 Tax=Proteobacteria RepID=J4J6W5_9BURK
O-methyl transferase {ECO:0000313|EMBL:EPX97056.1}; TaxID=1235457 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Ralstonia.;" source="Ralstonia sp. AU12-08.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_3_curated_17
Burkholderia xenovorans, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15452..16108)
DNA (657bp) protein (219aa)
Uncharacterized protein n=4 Tax=Proteobacteria RepID=A9IFW3_BORPD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABE31749.1}; TaxID=266265 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia xenovorans (strain LB400).;"
scnpilot_solids1_trim150_scaffold_3_curated_18
Acidovorax delafieldii, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16229..16570)
DNA (342bp) protein (114aa)
Uncharacterized protein n=1 Tax=Acidovorax delafieldii 2AN RepID=C5T7G5_ACIDE
Uncharacterized protein {ECO:0000313|EMBL:EER59573.1}; TaxID=573060 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax delafieldii 2AN.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_3_curated_19
Pseudomonas sp. 1-7, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16647..17054)
DNA (408bp) protein (136aa)
Uncharacterized protein n=1 Tax=Burkholderia sp. Ch1-1 RepID=I2IGV8_9BURK
Uncharacterized protein {ECO:0000313|EMBL:KFJ91467.1}; TaxID=633150 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. 1-7.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_3_curated_20
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17157..17498)
DNA (342bp) protein (114aa)
Uncharacterized protein n=1 Tax=Pseudomonas aeruginosa BL20 RepID=U9HSL5_PSEAI
Uncharacterized protein {ECO:0000313|EMBL:CDM23751.1}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" source="Castellaniella defragrans 65Phen.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_3_curated_21
Pseudomonas aeruginosa, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17591..18280)
DNA (690bp) protein (230aa)
Uncharacterized protein n=1 Tax=Pseudomonas aeruginosa BWHPSA028 RepID=U8NKK4_PSEAI
hypothetical protein
Pf11679 family protein {ECO:0000313|EMBL:BAQ39221.1}; TaxID=287 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas aeruginosa.;"
scnpilot_solids1_trim150_scaffold_3_curated_22
Alcaligenes sp. EGD-AK7, Alcaligenes, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18340..19296)
DNA (957bp) protein (319aa)
Uncharacterized protein n=1 Tax=Pseudomonas aeruginosa VRFPA08 RepID=V8DTS1_PSEAI
Uncharacterized protein {ECO:0000313|EMBL:ERI33705.1}; TaxID=1386079 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Alcaligenes.;" source="Alcaligenes sp. EGD-AK7.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_3_curated_23
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19886..20698)
DNA (813bp) protein (271aa)
GTPase n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI00036F9A1E
Uncharacterized protein {ECO:0000313|EMBL:GAD24659.1}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_3_curated_24
R_Burkholderiales_64_960, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21038..21754)
DNA (717bp) protein (239aa)
hypothetical protein n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI0003617BE2
hypothetical protein
Tax=RIFCSPHIGHO2_01_FULL_Burkholderiales_64_960_curated
scnpilot_solids1_trim150_scaffold_3_curated_25
Klebsiella michiganensis, Klebsiella, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21832..22518)
DNA (687bp) protein (229aa)
Uncharacterized protein n=1 Tax=Pseudomonas aeruginosa BL23 RepID=U9G0L4_PSEAI
Uncharacterized protein {ECO:0000313|EMBL:AJZ87901.1}; TaxID=1134687 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Klebsiella.;" source="Klebsiella michiganensis.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_3_curated_26
Pseudomonas syringae, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22705..23097)
DNA (393bp) protein (131aa)
Uncharacterized protein n=18 Tax=Proteobacteria RepID=A9IB63_BORPD
Uncharacterized protein {ECO:0000313|EMBL:AHG40978.1}; TaxID=1357279 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas; Pseudomonas syringae.;" source="Pseudomonas syringae CC1557.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_3_curated_27
Achromobacter xylosoxidans, Achromobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23120..23332)
DNA (213bp) protein (71aa)
Uncharacterized protein n=4 Tax=Proteobacteria RepID=A4G6I9_HERAR
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCH05056.1}; TaxID=1167634 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Achromobacter.;" source="Achromobacter xylosoxidans NH44784-1996.;"
scnpilot_solids1_trim150_scaffold_3_curated_28
Xanthomonas euvesicatoria, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23665..24222)
DNA (558bp) protein (186aa)
Uncharacterized protein n=1 Tax=Xanthomonas campestris pv. vesicatoria (strain 85-10) RepID=Q3BSX8_XANC5
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CAJ24081.1}; TaxID=316273 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas campestris pv. vesicatoria (strain 85-10).;"
scnpilot_solids1_trim150_scaffold_3_curated_29
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24464..26203)
DNA (1740bp) protein (580aa)
methyltransferase (EC:2.1.1.37); K00558 DNA (cytosine-5-)-methyltransferase [EC:2.1.1.37]
Cytosine-specific methyltransferase n=1 Tax=Bordetella bronchiseptica Bbr77 RepID=K4TGA3_BORBO
Site-specific DNA methylase {ECO:0000313|EMBL:GAD24668.1}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.;"
scnpilot_solids1_trim150_scaffold_3_curated_30
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26727..28739)
DNA (2013bp) protein (671aa)
DNA topoisomerase {ECO:0000256|RuleBase:RU000518, ECO:0000256|SAAS:SAAS00046608}; EC=5.99.1.2 {ECO:0000256|RuleBase:RU000518, ECO:0000256|SAAS:SAAS00046608};; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" source="Castellaniella defragrans 65Phen.;"
DNA topoisomerase III (EC:5.99.1.2)
DNA topoisomerase n=1 Tax=Pseudomonas aeruginosa WC55 RepID=T5KYD4_PSEAI
Displaying items 1-30 of 440 in total

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