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scnpilot_solids1_trim150_scaffold_411_curated_22

Organism: solids_Castellaniella_1

near complete RP 52 / 55 BSCG 51 / 51 ASCG 13 / 38
Location: comp(27141..27947)

Top 3 Functional Annotations

Value Algorithm Source
xylose isomerase n=1 Tax=Pseudomonas extremaustralis RepID=UPI00028A0F9A similarity UNIREF
DB: UNIREF100
  • Identity: 54.4
  • Coverage: 263.0
  • Bit_score: 289
  • Evalue 4.80e-75
Xylose isomerase {ECO:0000313|EMBL:EZI27584.1}; TaxID=1117958 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas extremaustralis 14-3 substr. 14-3b.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 54.4
  • Coverage: 263.0
  • Bit_score: 289
  • Evalue 6.70e-75
xylose isomerase domain-containing protein similarity KEGG
DB: KEGG
  • Identity: 50.4
  • Coverage: 256.0
  • Bit_score: 263
  • Evalue 6.80e-68

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Taxonomy

Pseudomonas extremaustralis → Pseudomonas → Pseudomonadales → Gammaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 807
ATGTCTCGCCGCTTTTCTCTTGCCCACCTGACCGCACTGAACCTGACACCGCCCGCCCTGGTGGACACCGCCGCCCAGGCCGGCTACCAGGCCTGCGGGCTGCGGCTGCTGCCCTTCACCTTCGGGGGCGTCGCCTATCGCCTGATGGACGATCCGCTGCTGCTGGAGGAAACCCTTGCGCGCATGCGGGATACCGGCATCCAGATCCAGGACATCGAAATCCTGCGCCTGAACGAAACCTTCAAGGCCAGCCCCTACCAGTCCTTCTTCGAAGTCGGGCAGCGGCTGGGCGCGAAACACATTCTGGTGGCCGGTGAGGACACGGACAGAAACCGCCTGGTCGACTCATTCGCCCGCCTCTGCGAAGCATGCAAGCCGTATGGACTCACGGCCAACGTCGAATTCATGCCCTGGCTGGCCATCAACGACCTGAGCACCGCCCGCGCGCTCGTCGAAGCCGCCGGACAGGACAACGGCGGCGTGCTGGTCGACCCCCTGCATTTCGCCCGATCCGGCAGCACGCTGGACCAACTGGCGGACCTTCCCGCCACAATGGCGCACTACGCGCAGATCTGCGACGCGCCCGCGGAGCTGCCGACCGACACGGCGGAACTGATCCACCTGTCCAGATCCGCGCGCCTGGCGCCCGGCGAAGGCGGCATCCCGCTCAAGGCGATCTTCCAGCGGCTGCCTCAGGGCGTCCCCATCGGCGTGGAAATCCCCAACGAGCACCAGTCCCGGCTGCTGGGCCACACCGCCTGGGCCCGGTACTGCCTGGAGGCATCGCAGCGGTTTTTCGAGCAATAG
PROTEIN sequence
Length: 269
MSRRFSLAHLTALNLTPPALVDTAAQAGYQACGLRLLPFTFGGVAYRLMDDPLLLEETLARMRDTGIQIQDIEILRLNETFKASPYQSFFEVGQRLGAKHILVAGEDTDRNRLVDSFARLCEACKPYGLTANVEFMPWLAINDLSTARALVEAAGQDNGGVLVDPLHFARSGSTLDQLADLPATMAHYAQICDAPAELPTDTAELIHLSRSARLAPGEGGIPLKAIFQRLPQGVPIGVEIPNEHQSRLLGHTAWARYCLEASQRFFEQ*