ggKbase home page

scnpilot_solids1_trim150_scaffold_279_curated_10

Organism: solids_Castellaniella_1

near complete RP 52 / 55 BSCG 51 / 51 ASCG 13 / 38
Location: 10458..11363

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase sigma factor RpoH n=1 Tax=Pusillimonas sp. (strain T7-7) RepID=F4GWA4_PUSST similarity UNIREF
DB: UNIREF100
  • Identity: 77.1
  • Coverage: 293.0
  • Bit_score: 451
  • Evalue 4.80e-124
RNA polymerase sigma factor RpoH {ECO:0000256|HAMAP-Rule:MF_00961, ECO:0000313|EMBL:CDM22876.1}; RNA polymerase sigma-32 factor {ECO:0000256|HAMAP-Rule:MF_00961}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" source="Castellaniella defragrans 65Phen.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 83.7
  • Coverage: 301.0
  • Bit_score: 502
  • Evalue 4.40e-139
RNA polymerase sigma-32 factor; K03089 RNA polymerase sigma-32 factor similarity KEGG
DB: KEGG
  • Identity: 77.1
  • Coverage: 293.0
  • Bit_score: 451
  • Evalue 1.50e-124

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Castellaniella defragrans → Castellaniella → Burkholderiales → Betaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 906
ATGAGCCACACTTCGTCTTCCCTGGTGTTGGCGCCGGCCCAGCTCGCGCAGGCCATATCCAACCCGGGCGCCCTGGGCACCATCGATGCCTACATCGGGGCGGTCAATCGCATGCCCATGCTGACGGCCGAACAGGAATCCAGCCTGGGCCGCAGGCTGCGCGACGACAACGATCTGGAAGCCGCCCGCGAACTGGTCCTGTCCCACCTGCGGCTGGTCGTGTCCGTCGCCCGTCAGTACCTGGGCTATGGTCTGGCGCACGCCGACCTGATCCAGGAAGGCAATATCGGCCTGATGAAGGCCGTGCGCCGTTTCGACCCCGATCGGGGGGTGCGTCTGGTGTCCTTCGCGGTGCACTGGATCCGCGCCGAAATCCATGAATACGTGGTGCGCAACTGGCGCCTGGTGAAGATCGCCACCACCAAGGCCCAGCGCAAACTGTTTTTCAACCTGCGGCGCATGCGTCCGGACGGCCACACTCTGGCGCCGGACCAAGTGTCAGACATCGCCCGCGAACTCGACGTGCGTCCCGAAGACGTCTCCGAAATGGAAGTCCGCCTGTCGGGCGGGGATTGCGCCCTGGATGCGCCGGCCGACGACGAAGACCGCTACGCCCCGATCGCGTGGCTGGCCGACGACAGCCAGGAACCGGCCCAGGTGCTGGCGCGCCGCAGCATGGATGCCCTGCAGAGCCAGGGCCTGGCCGACGCCCTGGACACGCTGGACGACCGTTCGCGGCATATCGTGCAGGCCCGCTGGCTGGCCGACGATGGCGGCGCGACCCTGCACGAACTGGCGGCGGAATACGGCATTTCGGCCGAACGCGTCCGCCAGATCGAAGCCGCCGCGCTGAAGAAGCTGAAAACCGCCCTGGCGGATCGGCAGCCGGACTTCATGGCCGCCTGA
PROTEIN sequence
Length: 302
MSHTSSSLVLAPAQLAQAISNPGALGTIDAYIGAVNRMPMLTAEQESSLGRRLRDDNDLEAARELVLSHLRLVVSVARQYLGYGLAHADLIQEGNIGLMKAVRRFDPDRGVRLVSFAVHWIRAEIHEYVVRNWRLVKIATTKAQRKLFFNLRRMRPDGHTLAPDQVSDIARELDVRPEDVSEMEVRLSGGDCALDAPADDEDRYAPIAWLADDSQEPAQVLARRSMDALQSQGLADALDTLDDRSRHIVQARWLADDGGATLHELAAEYGISAERVRQIEAAALKKLKTALADRQPDFMAA*