ggKbase home page

scnpilot_solids1_trim150_scaffold_279_curated

Search features with annotation key words

Displaying items 1-30 of 52 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids1_trim150_scaffold_279_curated_1
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1..924)
DNA (924bp) protein (308aa)
hypothetical protein n=1 Tax=Pusillimonas noertemannii RepID=UPI0002EDBF1F
Methyl-accepting chemotaxis protein I (Serine chemoreceptor protein) {ECO:0000313|EMBL:CDM25887.1}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" source="Castellaniella defragrans 65Phen.;"
methyl-accepting chemotaxis sensory transducer; K03406 methyl-accepting chemotaxis protein
scnpilot_solids1_trim150_scaffold_279_curated_2
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1236..2438
DNA (1203bp) protein (401aa)
Putative aminotransferase n=1 Tax=Pusillimonas sp. (strain T7-7) RepID=F4GWB7_PUSST
Putative aminotransferase {ECO:0000313|EMBL:CDM22868.1}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" source="Castellaniella defragrans 65Phen.;"
aminotransferase
scnpilot_solids1_trim150_scaffold_279_curated_3
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2456..3346
DNA (891bp) protein (297aa)
4-hydroxybenzoate octaprenyltransferase {ECO:0000256|SAAS:SAAS00188627}; EC=2.5.1.- {ECO:0000256|SAAS:SAAS00188633};; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" source="Castellaniella defragrans 65Phen.;"
4-hydroxybenzoate octaprenyltransferase; K03179 4-hydroxybenzoate octaprenyltransferase [EC:2.5.1.-]
4-hydroxybenzoate octaprenyltransferase n=1 Tax=Pusillimonas sp. (strain T7-7) RepID=F4GWB6_PUSST
scnpilot_solids1_trim150_scaffold_279_curated_4
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3533..5146
DNA (1614bp) protein (538aa)
Choline dehydrogenase {ECO:0000313|EMBL:CDM22870.1}; EC=1.1.99.1 {ECO:0000313|EMBL:CDM22870.1};; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" source="Castellaniella defragrans 65Phen.;"
dehydrogenase (EC:1.1.99.1)
Putative dehydrogenase n=1 Tax=Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448) RepID=A9IHE8_BORPD
scnpilot_solids1_trim150_scaffold_279_curated_5
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5265..6539
DNA (1275bp) protein (425aa)
Uncharacterized protein n=1 Tax=Pusillimonas sp. (strain T7-7) RepID=F4GWB5_PUSST
Putative membrane protein {ECO:0000313|EMBL:CDM22871.1}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" source="Castellaniella defragrans 65Phen.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_279_curated_6
R_Burkholderiales_67_14, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6582..6929
DNA (348bp) protein (116aa)
Regulatory protein, FmdB family n=1 Tax=Burkholderia graminis C4D1M RepID=B1FWP4_9BURK
FmdB family regulatory protein
Tax=RifCSPlowO2_12_Burkholderiales_67_14_curated
scnpilot_solids1_trim150_scaffold_279_curated_7
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6929..7594
DNA (666bp) protein (222aa)
Uncharacterized protein n=1 Tax=Pusillimonas sp. (strain T7-7) RepID=F4GWB3_PUSST
Transporter {ECO:0000313|EMBL:CDM22873.1}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" source="Castellaniella defragrans 65Phen.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_279_curated_8
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


7640..9430
DNA (1791bp) protein (597aa)
Aspartyl-tRNA synthetase / Aspartyl-tRNA synthetase {ECO:0000313|EMBL:CDM22874.1}; EC=6.1.1.12 {ECO:0000313|EMBL:CDM22874.1};; EC=6.1.1.23 {ECO:0000313|EMBL:CDM22874.1};; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" source="Castellaniella defragrans 65Phen.;"
aspartyl-tRNA synthetase; K01876 aspartyl-tRNA synthetase [EC:6.1.1.12]
aspartyl-tRNA synthetase n=1 Tax=Pusillimonas noertemannii RepID=UPI0002E6A5DD
scnpilot_solids1_trim150_scaffold_279_curated_9
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9448..10302
DNA (855bp) protein (285aa)
Uncharacterized protein n=1 Tax=Pusillimonas sp. (strain T7-7) RepID=F4GWB1_PUSST
Putative endonuclease/exonuclease/phosphatase family protein {ECO:0000313|EMBL:CDM22875.1}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" source="Castellaniella defragrans 65Phen.;"
hypothetical protein; K06896
scnpilot_solids1_trim150_scaffold_279_curated_10
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10458..11363
DNA (906bp) protein (302aa)
RNA polymerase sigma factor RpoH n=1 Tax=Pusillimonas sp. (strain T7-7) RepID=F4GWA4_PUSST
RNA polymerase sigma factor RpoH {ECO:0000256|HAMAP-Rule:MF_00961, ECO:0000313|EMBL:CDM22876.1}; RNA polymerase sigma-32 factor {ECO:0000256|HAMAP-Rule:MF_00961}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" source="Castellaniella defragrans 65Phen.;"
RNA polymerase sigma-32 factor; K03089 RNA polymerase sigma-32 factor
scnpilot_solids1_trim150_scaffold_279_curated_11
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11741..14353
DNA (2613bp) protein (871aa)
Sodium/hydrogen exchanger family protein n=1 Tax=Pusillimonas sp. (strain T7-7) RepID=F4GWA3_PUSST
Putative sodium/hydrogen exchanger family {ECO:0000313|EMBL:CDM22877.1}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" source="Castellaniella defragrans 65Phen.;"
sodium/hydrogen exchanger family protein; K03316 monovalent cation:H+ antiporter, CPA1 family
scnpilot_solids1_trim150_scaffold_279_curated_12
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14337..14948)
DNA (612bp) protein (204aa)
SCO1/SenC family protein n=1 Tax=Pusillimonas sp. (strain T7-7) RepID=F4GWA2_PUSST
Cytochrome oxidase biogenesis protein Sco1/SenC/PrrC, putative copper metallochaperone {ECO:0000313|EMBL:CDM22878.1}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" source="Castellaniella defragrans 65Phen.;"
SCO1/SenC family protein; K07152
scnpilot_solids1_trim150_scaffold_279_curated_13
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15010..15915)
DNA (906bp) protein (302aa)
Protoheme IX farnesyltransferase {ECO:0000256|HAMAP-Rule:MF_00154}; EC=2.5.1.- {ECO:0000256|HAMAP-Rule:MF_00154};; Heme B farnesyltransferase {ECO:0000256|HAMAP-Rule:MF_00154}; Heme O synthase {ECO:0000256|HAMAP-Rule:MF_00154}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" source="Castellaniella defragrans 65Phen.;"
ubiA1; protoheme IX farnesyltransferase (EC:2.5.1.-); K02301 protoheme IX farnesyltransferase [EC:2.5.1.-]
Protoheme IX farnesyltransferase n=1 Tax=Alcaligenes sp. EGD-AK7 RepID=U7U7L0_9BURK
scnpilot_solids1_trim150_scaffold_279_curated_14
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15926..17026)
DNA (1101bp) protein (367aa)
Cytochrome oxidase assembly protein n=2 Tax=Bordetella holmesii RepID=M5NJ36_9BORD
Heme A synthase, cytochrome oxidase biogenesis protein {ECO:0000313|EMBL:CDM22880.1}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" source="Castellaniella defragrans 65Phen.;"
cytochrome oxidase assembly protein; K02259 cytochrome c oxidase assembly protein subunit 15
scnpilot_solids1_trim150_scaffold_279_curated_15
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17041..17649)
DNA (609bp) protein (203aa)
hypothetical protein n=1 Tax=Pusillimonas noertemannii RepID=UPI0002F21C7E
Probable transmembrane protein {ECO:0000313|EMBL:CDM22881.1}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" source="Castellaniella defragrans 65Phen.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_279_curated_16
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17646..18440)
DNA (795bp) protein (265aa)
hypothetical protein n=1 Tax=Pusillimonas noertemannii RepID=UPI0002EF48C6
Cytochrome oxidase biogenesis protein Surf1, facilitates heme A insertion {ECO:0000313|EMBL:CDM22882.1}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" source="Castellaniella defragrans 65Phen.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_279_curated_17
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18555..18767
DNA (213bp) protein (71aa)
Uncharacterized protein n=2 Tax=Alcaligenes RepID=M5IUZ1_9BURK
Uncharacterized protein {ECO:0000313|EMBL:CDM22883.1}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" source="Castellaniella defragrans 65Phen.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_279_curated_18
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18788..19666)
DNA (879bp) protein (293aa)
Cytochrome c oxidase polypeptide III {ECO:0000313|EMBL:CDM22884.1}; EC=1.9.3.1 {ECO:0000313|EMBL:CDM22884.1};; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" source="Castellaniella defragrans 65Phen.;"
cytochrome c oxidase subunit III; K02276 cytochrome c oxidase subunit III [EC:1.9.3.1]
Putative cytochrome c oxidase, subunit III n=1 Tax=Pusillimonas sp. (strain T7-7) RepID=F4GW95_PUSST
scnpilot_solids1_trim150_scaffold_279_curated_19
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19877..19993)
DNA (117bp) protein (39aa)
Uncharacterized protein {ECO:0000313|EMBL:CDM22886.1}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" source="Castellaniella defragrans 65Phen.;"
scnpilot_solids1_trim150_scaffold_279_curated_20
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20025..21632)
DNA (1608bp) protein (536aa)
Cytochrome c oxidase polypeptide I {ECO:0000313|EMBL:CDM22887.1}; EC=1.9.3.1 {ECO:0000313|EMBL:CDM22887.1};; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" source="Castellaniella defragrans 65Phen.;"
coxA1; cytochrome c oxidase subunit I (EC:1.9.3.1); K02274 cytochrome c oxidase subunit I [EC:1.9.3.1]
cytochrome oxidase subunit I n=1 Tax=Pusillimonas noertemannii RepID=UPI00030B80F9
scnpilot_solids1_trim150_scaffold_279_curated_21
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21719..22879)
DNA (1161bp) protein (387aa)
Cytochrome c oxidase subunit 2 {ECO:0000256|RuleBase:RU004024}; EC=1.9.3.1 {ECO:0000256|RuleBase:RU004024, ECO:0000313|EMBL:CDM22888.1};; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" source="Castellaniella defragrans 65Phen.;"
cytochrome c oxidase subunit II; K02275 cytochrome c oxidase subunit II [EC:1.9.3.1]
Cytochrome c oxidase subunit 2 n=1 Tax=Pusillimonas sp. (strain T7-7) RepID=F4GW91_PUSST
scnpilot_solids1_trim150_scaffold_279_curated_22
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23134..23967
DNA (834bp) protein (278aa)
NUDIX hydrolase n=1 Tax=Pusillimonas sp. (strain T7-7) RepID=F4GW90_PUSST
NTP pyrophosphohydrolases including oxidative damage repair enzymes {ECO:0000313|EMBL:CDM22889.1}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" source="Castellaniella defragrans 65Phen.;"
NUDIX hydrolase
scnpilot_solids1_trim150_scaffold_279_curated_23
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24011..24658
DNA (648bp) protein (216aa)
Uncharacterized protein n=1 Tax=Pusillimonas sp. (strain T7-7) RepID=F4GW89_PUSST
Uncharacterized protein {ECO:0000313|EMBL:CDM22890.1}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" source="Castellaniella defragrans 65Phen.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_279_curated_24
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24776..26143
DNA (1368bp) protein (456aa)
glmU; UDP-N-acetylglucosamine synthesis bifunctional protein; K04042 bifunctional UDP-N-acetylglucosamine pyrophosphorylase / Glucosamine-1-phosphate N-acetyltransferase [EC:2.7.7.23 2.3.1.157]
glucosamine-1-phosphate N-acetyltransferase n=1 Tax=Pusillimonas noertemannii RepID=UPI0002DCF2C7
Bifunctional protein GlmU {ECO:0000256|HAMAP-Rule:MF_01631, ECO:0000256|SAAS:SAAS00083647}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" source="Castellaniella defragrans 65Phen.;"
scnpilot_solids1_trim150_scaffold_279_curated_25
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26215..27270
DNA (1056bp) protein (352aa)
Glycosyl transferase n=1 Tax=Alcaligenes faecalis subsp. faecalis NCIB 8687 RepID=J0AXF5_ALCFA
Putative glycosyl transferase {ECO:0000313|EMBL:CDM22893.1}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" source="Castellaniella defragrans 65Phen.;"
glycosyltransferase
scnpilot_solids1_trim150_scaffold_279_curated_26
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27306..27827)
DNA (522bp) protein (174aa)
Hexapeptide repeat-containing transferase n=1 Tax=Pusillimonas sp. (strain T7-7) RepID=F4GPS0_PUSST
Carbonic anhydrase, family 3 {ECO:0000313|EMBL:CDM22894.1}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" source="Castellaniella defragrans 65Phen.;"
hexapeptide repeat-containing transferase
scnpilot_solids1_trim150_scaffold_279_curated_27
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27969..28943
DNA (975bp) protein (325aa)
lipopolysaccharide heptosyltransferase-1; K02841 heptosyltransferase I [EC:2.4.-.-]
heptosyltransferase n=1 Tax=Pusillimonas noertemannii RepID=UPI0002D5C6B0
Lipopolysaccharide heptosyltransferase I {ECO:0000313|EMBL:CDM22895.1}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" source="Castellaniella defragrans 65Phen.;"
scnpilot_solids1_trim150_scaffold_279_curated_28
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28940..30274
DNA (1335bp) protein (445aa)
3-deoxy-D-manno-octulosonic-acid transferase; K02527 3-deoxy-D-manno-octulosonic-acid transferase [EC:2.4.99.12 2.4.99.13 2.4.99.14 2.4.99.15]
hypothetical protein n=1 Tax=Pusillimonas noertemannii RepID=UPI000307252F
3-deoxy-D-manno-octulosonic-acid transferase {ECO:0000313|EMBL:CDM22896.1}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" source="Castellaniella defragrans 65Phen.;"
scnpilot_solids1_trim150_scaffold_279_curated_29
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30314..31153)
DNA (840bp) protein (280aa)
UTP--glucose-1-phosphate uridylyltransferase {ECO:0000256|RuleBase:RU361259, ECO:0000313|EMBL:CDM22897.1}; EC=2.7.7.9 {ECO:0000256|RuleBase:RU361259, ECO:0000313|EMBL:CDM22897.1};; UDP-glucose pyrophosphorylase {ECO:0000256|RuleBase:RU361259}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" source="Castellaniella defragrans 65Phen.;"
UTP-glucose-1-phosphate uridylyltransferase; K00963 UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
UTP-glucose-1-phosphate uridylyltransferase n=1 Tax=Pusillimonas sp. (strain T7-7) RepID=F4GPT7_PUSST
scnpilot_solids1_trim150_scaffold_279_curated_30
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(31150..31326)
DNA (177bp) protein (59aa)
Uncharacterized protein n=1 Tax=Alcaligenes sp. EGD-AK7 RepID=U1XU86_9BURK
Uncharacterized protein {ECO:0000313|EMBL:CDM22898.1}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" source="Castellaniella defragrans 65Phen.;"
hypothetical protein
Displaying items 1-30 of 52 in total

View Taxonomy