ggKbase | organisms

Consensus taxonomy: Flavobacteriales → Flavobacteriia → Bacteroidetes → Bacteria

Metagenomic Context

Parent: SCNPILOT_SOLID_1_TRIM150_UNK Manually curated genome
Original version: SCNPILOT_SOLID_1_TRIM150_Flavobacteriales_40_4

Properties

Avg. coverage: 1.00 Longest contig: 8.95 Kbp Bin length: 1.31 Mbp GC content: 39.03 %

Contigs count: 814 Features count: 1669 rRNAs count: 0 tRNAs count: 0

Genome completeness

partial RP 13 / 55 BSCG 11 / 51 ASCG 2 / 38

Displaying items 451-500 of 814 in total

contig	# features	sequence size	GC content (%)	Cov	Coding Density (%)
scnpilot_solids1_trim150_scaffold_22846_curated Species: R_Fluviicola_43_260 (50%)	2	1604 bp	36.35	1.00	76.12
scnpilot_solids1_trim150_scaffold_41385_curated Species: R_Fluviicola_43_260 (50%)	2	1037 bp	37.80	1.00	80.71
scnpilot_solids1_trim150_scaffold_9956_curated Species: GWA2_Bacteroidetes_31_9_curated (50%)	2	3426 bp	38.85	1.00	88.97
scnpilot_solids1_trim150_scaffold_39146_curated Species: Flavobacterium reichenbachii (50%)	2	1080 bp	33.33	1.00	75.28
scnpilot_solids1_trim150_scaffold_22535_curated Species: Flavobacterium hibernum (50%)	2	1452 bp	45.04	1.00	48.55
scnpilot_solids1_trim150_scaffold_30777_curated Species: Fluviicola taffensis (50%)	2	1291 bp	41.98	1.00	93.18
scnpilot_solids1_trim150_scaffold_40797_curated Species: Riemerella anatipestifer (50%)	2	1049 bp	37.75	1.00	78.93
scnpilot_solids1_trim150_scaffold_25875_curated Species: Fluviicola taffensis (50%)	2	1400 bp	40.79	1.00	99.64
scnpilot_solids1_trim150_scaffold_19983_curated Species: Myroides profundi (50%)	2	1760 bp	40.63	1.00	100.06
scnpilot_solids1_trim150_scaffold_24267_curated Species: Capnocytophaga cynodegmi (50%)	2	1531 bp	45.26	1.00	92.49
scnpilot_solids1_trim150_scaffold_15754_curated Species: candidate division TM6 bacterium Zodletone_IIa (50%)	2	2082 bp	42.84	1.00	85.30
scnpilot_solids1_trim150_scaffold_39479_curated Species: Fluviicola taffensis (100%)	2	1075 bp	35.44	1.00	99.07
scnpilot_solids1_trim150_scaffold_40798_curated Species: CG_Flavo_02 (50%)	2	917 bp	37.08	1.00	94.87
scnpilot_solids1_trim150_scaffold_18253_curated Species: R_Fluviicola_43_260 (100%)	2	1873 bp	39.51	1.00	78.16
scnpilot_solids1_trim150_scaffold_9779_curated Species: BJP_IG2102_Flavobacteriales_34_12 (50%)	2	2932 bp	36.02	1.00	98.12
scnpilot_solids1_trim150_scaffold_31008_curated Species: Aequorivita sublithincola (50%)	2	2146 bp	46.78	1.00	54.38
scnpilot_solids1_trim150_scaffold_42133_curated Species: uncultured Flavobacteriia bacterium (50%)	2	1024 bp	35.84	1.00	98.14
scnpilot_solids1_trim150_scaffold_19814_curated Species: Fluviicola taffensis (50%)	2	1769 bp	40.59	1.00	90.73
scnpilot_solids1_trim150_scaffold_42151_curated Species: Elizabethkingia miricola (100%)	2	880 bp	40.45	1.00	76.02
scnpilot_solids1_trim150_scaffold_25590_curated Species: Nonlabens dokdonensis (50%)	2	1389 bp	33.55	1.00	100.65
scnpilot_solids1_trim150_scaffold_37704_curated Species: R_Fluviicola_43_260 (50%)	2	1112 bp	37.32	1.00	107.64
scnpilot_solids1_trim150_scaffold_20407_curated	2	1721 bp	29.05	1.00	35.91
scnpilot_solids1_trim150_scaffold_16319_curated Species: Flavobacterium subsaxonicum (50%)	2	2028 bp	45.36	1.00	81.80
scnpilot_solids1_trim150_scaffold_37858_curated Species: R_Fluviicola_43_260 (100%)	2	1109 bp	38.95	1.00	99.55
scnpilot_solids1_trim150_scaffold_24617_curated Species: Flavobacterium branchiophilum (50%)	2	1516 bp	41.89	1.00	95.18
scnpilot_solids1_trim150_scaffold_20797_curated Species: Elizabethkingia miricola (100%)	2	1402 bp	32.88	1.00	90.94
scnpilot_solids1_trim150_scaffold_38538_curated Species: Fluviicola taffensis (100%)	2	997 bp	39.52	1.00	92.08
scnpilot_solids1_trim150_scaffold_33625_curated Species: Elizabethkingia miricola (100%)	2	1188 bp	41.16	1.00	77.78
scnpilot_solids1_trim150_scaffold_35327_curated Species: R_Fluviicola_43_260 (100%)	2	1026 bp	36.74	1.00	88.30
scnpilot_solids1_trim150_scaffold_18441_curated Species: Elizabethkingia meningoseptica (50%)	2	1859 bp	40.61	1.00	87.30
scnpilot_solids1_trim150_scaffold_33490_curated Species: Pseudopedobacter saltans (50%)	2	1050 bp	38.10	1.00	61.14
scnpilot_solids1_trim150_scaffold_41654_curated Species: Chryseobacterium gleum (50%)	2	927 bp	37.00	1.00	70.55
scnpilot_solids1_trim150_scaffold_38932_curated Species: Flavobacteriales bacterium BRH_c54 (50%)	2	684 bp	36.99	1.00	79.82
scnpilot_solids1_trim150_scaffold_19512_curated Species: Chryseobacterium solincola (50%)	2	1788 bp	47.71	1.00	86.58
scnpilot_solids1_trim150_scaffold_12624_curated Species: Bergeyella zoohelcum (50%)	2	2401 bp	34.94	1.00	75.09
scnpilot_solids1_trim150_scaffold_19259_curated Species: R_Fluviicola_43_260 (50%)	2	2545 bp	42.79	1.00	84.28
scnpilot_solids1_trim150_scaffold_24731_curated Species: Chryseobacterium sp. JM1 (100%)	2	1468 bp	35.15	1.00	99.73
scnpilot_solids1_trim150_scaffold_37403_curated Species: Flavobacterium enshiense (50%)	2	1099 bp	39.13	1.00	93.08
scnpilot_solids1_trim150_scaffold_43055_curated Species: Myroides odoratimimus (50%)	2	1008 bp	36.51	1.00	93.15
scnpilot_solids1_trim150_scaffold_33065_curated Species: Flavobacterium hydatis (50%)	2	1224 bp	52.70	1.00	99.51
scnpilot_solids1_trim150_scaffold_41560_curated Species: Chryseobacterium taiwanense (50%)	2	899 bp	38.82	1.00	89.10
scnpilot_solids1_trim150_scaffold_30003_curated Species: Zunongwangia profunda (50%)	2	1325 bp	39.02	1.00	98.94
scnpilot_solids1_trim150_scaffold_40926_curated Species: Flavobacterium sp. 316 (50%)	2	1047 bp	35.63	1.00	99.14
scnpilot_solids1_trim150_scaffold_28532_curated Species: Flavobacteriaceae bacterium 3519-10 (50%)	2	1346 bp	37.96	1.00	49.70
scnpilot_solids1_trim150_scaffold_32760_curated Species: Gramella forsetii (50%)	2	1232 bp	34.42	1.00	58.93
scnpilot_solids1_trim150_scaffold_29946_curated Species: Flavobacterium sp. 316 (50%)	2	1248 bp	34.21	1.00	83.89
scnpilot_solids1_trim150_scaffold_43176_curated Species: R_Fluviicola_43_260 (50%)	2	899 bp	40.16	1.00	91.77
scnpilot_solids1_trim150_scaffold_43323_curated Species: Galbibacter marinus (100%)	2	1003 bp	36.09	1.00	79.56
scnpilot_solids1_trim150_scaffold_43023_curated Species: Fluviicola taffensis (50%)	2	1002 bp	41.12	1.00	96.11
scnpilot_solids1_trim150_scaffold_43364_curated Species: Chryseobacterium luteum (50%)	2	1003 bp	42.37	1.00	95.41

Displaying items 451-500 of 814 in total

solids_Flavobacteriales_1

SCNPILOT_SOLID_1_TRIM150_Flavobacteriales_39_1

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.

solids_Flavobacteriales_1

SCNPILOT_SOLID_1_TRIM150_Flavobacteriales_39_1

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.

Processing

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