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scnpilot_solids1_trim150_scaffold_2615_curated

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Displaying 12 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids1_trim150_scaffold_2615_curated_1
Alcanivorax hongdengensis, Alcanivorax, Oceanospirillales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(1..63)
DNA (63bp) protein (21aa)
Uncharacterized protein n=1 Tax=Thauera sp. 28 RepID=N6ZGK4_9RHOO
Uncharacterized protein {ECO:0000313|EMBL:EKF74677.1}; TaxID=1177179 species="Bacteria; Proteobacteria; Gammaproteobacteria; Oceanospirillales; Alcanivoracaceae; Alcanivorax.;" source="Alcanivorax hongdengensis A-11-3.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_2615_curated_2
unknown

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297..2252
DNA (1956bp) protein (652aa)

This feature has no annotations

scnpilot_solids1_trim150_scaffold_2615_curated_3
Alcanivorax pacificus, Alcanivorax, Oceanospirillales, Gammaproteobacteria, Proteobacteria, Bacteria

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2298..3458
DNA (1161bp) protein (387aa)
Uncharacterized protein n=1 Tax=Alcanivorax pacificus W11-5 RepID=K2HKK4_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:AJD49696.1}; TaxID=391936 species="Bacteria; Proteobacteria; Gammaproteobacteria; Oceanospirillales; Alcanivoracaceae; Alcanivorax.;" source="Alcanivorax pacificus W11-5.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_2615_curated_4
Lysobacter daejeonensis, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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3938..4306
DNA (369bp) protein (123aa)
Putative uncharacterized protein n=1 Tax=Pseudoxanthomonas suwonensis (strain 11-1) RepID=E6WUV8_PSEUU
Membrane protein {ECO:0000313|EMBL:KGM55466.1}; TaxID=1385517 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter daejeonensis GH1-9.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_2615_curated_5
Lysobacter daejeonensis, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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4276..4704
DNA (429bp) protein (143aa)
Membrane protein {ECO:0000313|EMBL:KGM55466.1}; TaxID=1385517 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter daejeonensis GH1-9.;"
Putative uncharacterized protein id=2750864 bin=GWF1_Xanthomonadales_69_6 species=Pseudoxanthomonas suwonensis genus=Pseudoxanthomonas taxon_order=Xanthomonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWF1_Xanthomonadales_69_6 organism_group=Gammaproteobacteria
hypothetical protein
scnpilot_solids1_trim150_scaffold_2615_curated_6
Lysobacter capsici, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(4789..5793)
DNA (1005bp) protein (335aa)
Isocitrate dehydrogenase {ECO:0000313|EMBL:EYR66631.1}; EC=1.1.1.41 {ECO:0000313|EMBL:EYR66631.1};; TaxID=1444315 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter capsici AZ78.;"
icd; isocitrate dehydrogenase (EC:1.1.1.41); K00030 isocitrate dehydrogenase (NAD+) [EC:1.1.1.41]
isocitrate dehydrogenase n=1 Tax=Arenimonas oryziterrae RepID=UPI0003B2FB76
scnpilot_solids1_trim150_scaffold_2615_curated_7
Pseudoxanthomonas suwonensis, Pseudoxanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(5903..6289)
DNA (387bp) protein (129aa)
Alkyl hydroperoxide reductase AhpD {ECO:0000256|SAAS:SAAS00088523}; EC=1.11.1.15 {ECO:0000256|SAAS:SAAS00088503};; TaxID=743721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Pseudoxanthomonas.;" source="Pseudoxanthomonas suwonensis (strain 11-1).;"
Alkylhydroperoxidase like protein, AhpD family n=1 Tax=Pseudoxanthomonas suwonensis (strain 11-1) RepID=E6WUW0_PSEUU
alkylhydroperoxidase like protein
scnpilot_solids1_trim150_scaffold_2615_curated_8
Stenotrophomonas maltophilia, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(6286..6564)
DNA (279bp) protein (93aa)
Glutaredoxin 3 n=1 Tax=Stenotrophomonas maltophilia EPM1 RepID=M3FMA0_STEMA
grxC; glutaredoxin; K03676 glutaredoxin 3
Glutaredoxin {ECO:0000313|EMBL:KKD57553.1}; TaxID=40324 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas; Stenotrophomonas maltophilia group.;" source="Stenotrophomonas maltophilia (Pseudomonas maltophilia) (Xanthomonas; maltophilia).;"
scnpilot_solids1_trim150_scaffold_2615_curated_9
unknown

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comp(6633..7760)
DNA (1128bp) protein (376aa)

This feature has no annotations

scnpilot_solids1_trim150_scaffold_2615_curated_10
Xanthomonas translucens, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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7963..8286
DNA (324bp) protein (108aa)
Putative beta-barrel assembly-enhancing protease {ECO:0000256|HAMAP-Rule:MF_00997}; EC=3.4.-.- {ECO:0000256|HAMAP-Rule:MF_00997};; Flags: Precursor;; TaxID=1261556 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas translucens pv. translucens DSM 18974.;"
Zn-dependent protease n=1 Tax=Xanthomonas translucens DAR61454 RepID=L7GW06_XANCT
peptidase M48 Ste24p
scnpilot_solids1_trim150_scaffold_2615_curated_11
Lysobacter capsici, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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8362..9063
DNA (702bp) protein (234aa)
Two-component system regulatory protein n=1 Tax=Pseudoxanthomonas spadix (strain BD-a59) RepID=G7UQZ9_PSEUP
PhoB family transcriptional regulator {ECO:0000313|EMBL:EYR66634.1}; TaxID=1444315 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter capsici AZ78.;"
two-component system regulatory protein; K07657 two-component system, OmpR family, phosphate regulon response regulator PhoB
scnpilot_solids1_trim150_scaffold_2615_curated_12
Lysobacter capsici, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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9167..10687
DNA (1521bp) protein (507aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1444315 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter capsici AZ78.;"
phoR; two-component system sensor protein; K07636 two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3]
histidine kinase n=3 Tax=Xanthomonas axonopodis RepID=UPI0002E6E769
Displaying 12 items

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