ggKbase home page

scnpilot_solids1_trim150_scaffold_1013_curated

Search features with annotation key words

Displaying items 1-30 of 41 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids1_trim150_scaffold_1013_curated_1
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(113..1510)
DNA (1398bp) protein (466aa)
Coproporphyrinogen-III oxidase {ECO:0000256|PIRNR:PIRNR000167}; EC=1.3.99.22 {ECO:0000256|PIRNR:PIRNR000167};; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
Coproporphyrinogen-III oxidase n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WE57_9GAMM
oxygen-independent coproporphyrinogen III oxidase
scnpilot_solids1_trim150_scaffold_1013_curated_2
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1613..2599)
DNA (987bp) protein (329aa)
Fumarylacetoacetate (FAA) hydrolase n=1 Tax=Rhodanobacter denitrificans RepID=I4WMF6_9GAMM
2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
scnpilot_solids1_trim150_scaffold_1013_curated_3
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2621..3955)
DNA (1335bp) protein (445aa)
Homogentisate 1,2-dioxygenase {ECO:0000256|HAMAP-Rule:MF_00334, ECO:0000256|SAAS:SAAS00015626}; Short=HGDO {ECO:0000256|HAMAP-Rule:MF_00334};; EC=1.13.11.5 {ECO:0000256|HAMAP-Rule:MF_00334, ECO:0000256|SAAS:SAAS00015614};; Homogentisate oxygenase {ECO:0000256|HAMAP-Rule:MF_00334}; Homogentisic acid oxidase {ECO:0000256|HAMAP-Rule:MF_00334}; Homogentisicase {ECO:0000256|HAMAP-Rule:MF_00334}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter
homogentisate 1,2-dioxygenase (EC:1.13.11.5)
Homogentisate 1,2-dioxygenase n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VYU5_9GAMM
scnpilot_solids1_trim150_scaffold_1013_curated_4
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3967..5055)
DNA (1089bp) protein (363aa)
4-hydroxyphenylpyruvate dioxygenase n=1 Tax=Rhodanobacter denitrificans RepID=M4NAU6_9GAMM
4-hydroxyphenylpyruvate dioxygenase
4-hydroxyphenylpyruvate dioxygenase {ECO:0000313|EMBL:AGG87705.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids1_trim150_scaffold_1013_curated_5
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5162..5653
DNA (492bp) protein (164aa)
MarR family transcriptional regulator n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VYU7_9GAMM
MarR family transcriptional regulator {ECO:0000313|EMBL:EIL92388.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
transcriptional regulator
scnpilot_solids1_trim150_scaffold_1013_curated_6
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5686..6594)
DNA (909bp) protein (303aa)
Tryptophan 2,3-dioxygenase {ECO:0000256|HAMAP-Rule:MF_01972}; Short=TDO {ECO:0000256|HAMAP-Rule:MF_01972};; EC=1.13.11.11 {ECO:0000256|HAMAP-Rule:MF_01972};; Tryptamin 2,3-dioxygenase {ECO:0000256|HAMAP-Rule:MF_01972}; Tryptophan oxygenase {ECO:0000256|HAMAP-Rule:MF_01972}; Tryptophan pyrrolase {ECO:0000256|HAMAP-Rule:MF_01972}; Tryptophanase {ECO:0000256|HAMAP-Rule:MF_01972}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rh
Tryptophan 2,3-dioxygenase n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VYV0_9GAMM
tryptophan 2,3-dioxygenase (vermilion)
scnpilot_solids1_trim150_scaffold_1013_curated_7
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6831..7916
DNA (1086bp) protein (362aa)
ABC transporter permease n=1 Tax=Dyella ginsengisoli RepID=UPI0003483D94
Pyruvate dehydrogenase E1 alpha subunit {ECO:0000313|EMBL:EIL99904.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
pyruvate dehydrogenase E1 component, alpha subunit
scnpilot_solids1_trim150_scaffold_1013_curated_8
Dyella jiangningensis, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7920..8900
DNA (981bp) protein (327aa)
2-oxoisovalerate dehydrogenase subunit beta n=1 Tax=Dyella ginsengisoli RepID=UPI00034665D3
2-oxoisovalerate dehydrogenase {ECO:0000313|EMBL:AHX11950.1}; TaxID=1379159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella jiangningensis.;"
pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase component beta subunit
scnpilot_solids1_trim150_scaffold_1013_curated_9
Dyella japonica, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9015..10403
DNA (1389bp) protein (463aa)
Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase component n=1 Tax=Rhodanobacter denitrificans RepID=M4NDY8_9GAMM
pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase component
Branched-chain alpha-keto acid dehydrogenase subunit E2 {ECO:0000313|EMBL:AIF49428.1}; TaxID=1217721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella japonica A8.;"
scnpilot_solids1_trim150_scaffold_1013_curated_10
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10416..11768)
DNA (1353bp) protein (451aa)
Tryptophan--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00140, ECO:0000256|SAAS:SAAS00009965}; EC=6.1.1.2 {ECO:0000256|HAMAP-Rule:MF_00140, ECO:0000256|SAAS:SAAS00009965};; Tryptophanyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00140}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
tryptophanyl-tRNA synthetase (EC:6.1.1.2)
Tryptophan--tRNA ligase n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VYW1_9GAMM
scnpilot_solids1_trim150_scaffold_1013_curated_11
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11811..12725)
DNA (915bp) protein (305aa)
Arginase {ECO:0000256|RuleBase:RU361159}; EC=3.5.3.1 {ECO:0000256|RuleBase:RU361159};; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
arginase (EC:3.5.3.1)
Arginase n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WE81_9GAMM
scnpilot_solids1_trim150_scaffold_1013_curated_12
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12918..13607)
DNA (690bp) protein (230aa)
Sporulation domain-containing protein n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WE84_9GAMM
Sporulation domain-containing protein {ECO:0000313|EMBL:EIL97775.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
sporulation related protein
scnpilot_solids1_trim150_scaffold_1013_curated_13
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13610..14404)
DNA (795bp) protein (265aa)
Type III pantothenate kinase {ECO:0000256|HAMAP-Rule:MF_01274}; EC=2.7.1.33 {ECO:0000256|HAMAP-Rule:MF_01274};; PanK-III {ECO:0000256|HAMAP-Rule:MF_01274}; Pantothenic acid kinase {ECO:0000256|HAMAP-Rule:MF_01274}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
Type III pantothenate kinase n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VYW8_9GAMM
pantothenate kinase, type III
scnpilot_solids1_trim150_scaffold_1013_curated_14
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14401..15447)
DNA (1047bp) protein (349aa)
Biotin-(Acetyl-CoA-carboxylase) ligase BirA n=2 Tax=Rhodanobacter denitrificans RepID=I4WMI0_9GAMM
birA, biotin-(acetyl-CoA-carboxylase) ligase
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
scnpilot_solids1_trim150_scaffold_1013_curated_15
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15568..15888
DNA (321bp) protein (107aa)
Uncharacterized protein n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WE87_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL97778.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_1013_curated_16
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15929..17368)
DNA (1440bp) protein (480aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
Signal transduction histidine kinase n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VYX2_9GAMM
signal transduction histidine kinase
scnpilot_solids1_trim150_scaffold_1013_curated_17
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17316..18008)
DNA (693bp) protein (231aa)
Response regulator with CheY-like receiver domain and winged-helix DNA-binding domain n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VYX3_9GAMM
Response regulator with CheY-like receiver domain and winged-helix DNA-binding domain {ECO:0000313|EMBL:EIL92414.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
response regulator with CheY-like receiver domain and winged-helix DNA-binding domain
scnpilot_solids1_trim150_scaffold_1013_curated_18
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18017..18415)
DNA (399bp) protein (133aa)
Uncharacterized protein n=1 Tax=Rhodanobacter denitrificans RepID=I4WMI5_9GAMM
hypothetical protein
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
scnpilot_solids1_trim150_scaffold_1013_curated_19
Dyella japonica, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18412..19353)
DNA (942bp) protein (314aa)
tRNA-dihydrouridine synthase {ECO:0000256|PIRNR:PIRNR006621}; EC=1.-.-.- {ECO:0000256|PIRNR:PIRNR006621};; TaxID=1217721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella japonica A8.;"
tRNA-dihydrouridine synthase A n=1 Tax=Dyella japonica RepID=UPI000304CE08
tRNA-U16,U17-dihydrouridine synthase
scnpilot_solids1_trim150_scaffold_1013_curated_20
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19509..19895)
DNA (387bp) protein (129aa)
Uncharacterized protein n=1 Tax=Rhodanobacter denitrificans RepID=I4WQD9_9GAMM
hypothetical protein
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
scnpilot_solids1_trim150_scaffold_1013_curated_21
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19947..20636
DNA (690bp) protein (230aa)
Nicotinamidase n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VZ00_9GAMM
Nicotinamidase {ECO:0000313|EMBL:EIL92441.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
nicotinamidase-like amidase
scnpilot_solids1_trim150_scaffold_1013_curated_22
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20643..20831)
DNA (189bp) protein (63aa)
Uncharacterized protein n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WH46_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL98787.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_1013_curated_23
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20984..21250
DNA (267bp) protein (89aa)
Uncharacterized protein n=1 Tax=Rhodanobacter denitrificans RepID=I4WQE4_9GAMM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGG87637.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids1_trim150_scaffold_1013_curated_24
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21436..21918)
DNA (483bp) protein (161aa)
Uncharacterized protein n=1 Tax=Rhodanobacter sp. 115 RepID=I4VIL9_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL87060.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_1013_curated_25
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22093..22959
DNA (867bp) protein (289aa)
NAD-dependent protein deacetylase {ECO:0000256|HAMAP-Rule:MF_01967}; EC=3.5.1.- {ECO:0000256|HAMAP-Rule:MF_01967};; Regulatory protein SIR2 homolog {ECO:0000256|HAMAP-Rule:MF_01967}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
NAD-dependent protein deacetylase n=1 Tax=Rhodanobacter thiooxydans LCS2 PF3_9GAMM">RepID=I4WPF3_9GAMM
NAD-dependent protein deacetylase, SIR2 family
scnpilot_solids1_trim150_scaffold_1013_curated_26
gamma proteobacterium BDW918, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23002..23595)
DNA (594bp) protein (198aa)
Uncharacterized protein n=1 Tax=gamma proteobacterium BDW918 RepID=I2JGS3_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIF42175.1}; TaxID=1168065 species="Bacteria; Proteobacteria; Gammaproteobacteria.;" source="gamma proteobacterium BDW918.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_1013_curated_27
Kutzneria albida, Kutzneria, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(24232..24984)
DNA (753bp) protein (251aa)
Putative methyltransferase n=1 Tax=Actinoplanes missouriensis (strain ATCC 14538 / DSM 43046 / CBS 188.64 / JCM 3121 / NCIMB 12654 / NBRC 102363 / 431) RepID=I0H9P0_ACTM4
Uncharacterized protein {ECO:0000313|EMBL:AHI01096.1}; TaxID=1449976 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Kutzneria.;" source="Kutzneria albida DSM 43870.;"
putative methyltransferase
scnpilot_solids1_trim150_scaffold_1013_curated_28
Oleiagrimonas soli, Oleiagrimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25022..27751)
DNA (2730bp) protein (910aa)
Aminopeptidase n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WJC5_9GAMM
Aminopeptidase N {ECO:0000313|EMBL:KGI76995.1}; TaxID=1543381 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Oleiagrimonas.;" source="Oleiagrimonas soli.;"
aminopeptidase N
scnpilot_solids1_trim150_scaffold_1013_curated_29
Herbaspirillum sp. CF444, Herbaspirillum, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27868..28347)
DNA (480bp) protein (160aa)
Cupin domain-containing protein n=1 Tax=Herbaspirillum sp. CF444 RepID=J2LQ33_9BURK
Cupin domain-containing protein {ECO:0000313|EMBL:EJL94380.1}; Flags: Precursor;; TaxID=1144319 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Herbaspirillum.;" source="Herbaspirillum sp. CF444.;"
cupin
scnpilot_solids1_trim150_scaffold_1013_curated_30
GWF1_Xanthomonadales_69_6_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28478..29014)
DNA (537bp) protein (179aa)
Uncharacterized protein id=2983184 bin=GWF1_Xanthomonadales_69_6 species=Azoarcus sp. genus=Azoarcus taxon_order=Rhodocyclales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Xanthomonadales_69_6 organism_group=Gammaproteobacteria
hypothetical protein
Tax=GWF1_Xanthomonadales_69_6_curated
Displaying items 1-30 of 41 in total

View Taxonomy