ggKbase home page

scnpilot_solids1_trim150_scaffold_4877_curated

Search features with annotation key words

Displaying 7 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids1_trim150_scaffold_4877_curated_1
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3..1115
DNA (1113bp) protein (371aa)
DNA topoisomerase 4 subunit B {ECO:0000256|HAMAP-Rule:MF_00938}; EC=5.99.1.3 {ECO:0000256|HAMAP-Rule:MF_00938};; Topoisomerase IV subunit B {ECO:0000256|HAMAP-Rule:MF_00938}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
DNA topoisomerase 4 subunit B n=1 Tax=Rhodanobacter denitrificans RepID=I4WLJ1_9GAMM
DNA topoisomerase IV, B subunit, proteobacterial
scnpilot_solids1_trim150_scaffold_4877_curated_2
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1511..3034
DNA (1524bp) protein (508aa)
Amino acid transporter n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VK03_9GAMM
Amino acid transporter {ECO:0000313|EMBL:EIL87544.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
amino acid permease-associated protein; K03294 basic amino acid/polyamine antiporter, APA family
scnpilot_solids1_trim150_scaffold_4877_curated_3
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3145..4605
DNA (1461bp) protein (487aa)
Cationic amino acid transporter n=1 Tax=Rhodanobacter denitrificans RepID=I4WLI4_9GAMM
amino acid transporter
Amino acid transporter {ECO:0000313|EMBL:AGG88530.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids1_trim150_scaffold_4877_curated_4
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5043..5372)
DNA (330bp) protein (110aa)
High potential iron-sulfur protein n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WRH2_9GAMM
High potential iron-sulfur protein
High potential iron-sulfur protein {ECO:0000313|EMBL:EIM02064.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
scnpilot_solids1_trim150_scaffold_4877_curated_5
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5539..6189
DNA (651bp) protein (217aa)
Methylthioribulose-1-phosphate dehydratase {ECO:0000256|HAMAP-Rule:MF_01677}; Short=MTRu-1-P dehydratase {ECO:0000256|HAMAP-Rule:MF_01677};; EC=4.2.1.109 {ECO:0000256|HAMAP-Rule:MF_01677};; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
methylthioribulose-1-phosphate dehydratase (EC:4.2.1.109)
Methylthioribulose-1-phosphate dehydratase n=1 Tax=Rhodanobacter sp. 115 RepID=I4WQJ9_9GAMM
scnpilot_solids1_trim150_scaffold_4877_curated_6
Dyella jiangningensis, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6186..6755
DNA (570bp) protein (190aa)
Acireductone dioxygenase n=1 Tax=Rhodanobacter denitrificans RepID=M4NEY4_9GAMM
Acireductone dioxygenase {ECO:0000256|HAMAP-Rule:MF_01682, ECO:0000256|SAAS:SAAS00009702}; 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase {ECO:0000256|HAMAP-Rule:MF_01682, ECO:0000256|SAAS:SAAS00090345}; Acireductone dioxygenase (Fe(2+)-requiring) {ECO:0000256|HAMAP-Rule:MF_01682}; Acireductone dioxygenase (Ni(2+)-requiring) {ECO:0000256|HAMAP-Rule:MF_01682}; TaxID=1379159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella jiangningensis
hypothetical protein, contains double-stranded beta-helix domain
scnpilot_solids1_trim150_scaffold_4877_curated_7
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6800..7486
DNA (687bp) protein (229aa)
Enolase-phosphatase E1 {ECO:0000256|HAMAP-Rule:MF_01681}; EC=3.1.3.77 {ECO:0000256|HAMAP-Rule:MF_01681};; 2,3-diketo-5-methylthio-1-phosphopentane phosphatase {ECO:0000256|HAMAP-Rule:MF_01681}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
Enolase-phosphatase E1 n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W6A6_9GAMM
acireductone synthase
Displaying 7 items

View Taxonomy