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scnpilot_solids1_trim150_scaffold_1147_curated

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Displaying 16 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids1_trim150_scaffold_1147_curated_1
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(2..1111)
DNA (1110bp) protein (370aa)
molecular chaperone DnaK n=1 Tax=Dyella ginsengisoli RepID=UPI0003495AD0
Chaperone protein DnaK {ECO:0000256|HAMAP-Rule:MF_00332}; HSP70 {ECO:0000256|HAMAP-Rule:MF_00332}; Heat shock 70 kDa protein {ECO:0000256|HAMAP-Rule:MF_00332}; Heat shock protein 70 {ECO:0000256|HAMAP-Rule:MF_00332}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
chaperone protein DnaK
scnpilot_solids1_trim150_scaffold_1147_curated_2
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(1242..1778)
DNA (537bp) protein (179aa)
Protein GrpE n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VTX3_9GAMM
Protein GrpE {ECO:0000256|HAMAP-Rule:MF_01151, ECO:0000256|RuleBase:RU000639}; HSP-70 cofactor {ECO:0000256|HAMAP-Rule:MF_01151}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
molecular chaperone GrpE (heat shock protein)
scnpilot_solids1_trim150_scaffold_1147_curated_3
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(1858..2919)
DNA (1062bp) protein (354aa)
Heat-inducible transcription repressor hrcA n=1 Tax=Rhodanobacter denitrificans RepID=I4WXI0_9GAMM
heat-inducible transcription repressor HrcA
Heat-inducible transcription repressor HrcA {ECO:0000256|HAMAP-Rule:MF_00081, ECO:0000256|SAAS:SAAS00101987}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids1_trim150_scaffold_1147_curated_4
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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3062..4735
DNA (1674bp) protein (558aa)
DNA repair protein RecN n=1 Tax=Rhodanobacter denitrificans RepID=M4NH33_9GAMM
DNA replication and repair protein RecN
DNA repair protein RecN {ECO:0000256|PIRNR:PIRNR003128}; Recombination protein N {ECO:0000256|PIRNR:PIRNR003128}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids1_trim150_scaffold_1147_curated_5
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(4872..5294)
DNA (423bp) protein (141aa)
Fe2+/Zn2+ uptake regulation protein n=1 Tax=Rhodanobacter denitrificans RepID=I4WXH6_9GAMM
Fe2+/Zn2+ uptake regulation protein
Fe2+/Zn2+ uptake regulation protein {ECO:0000313|EMBL:AGG88956.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids1_trim150_scaffold_1147_curated_6
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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5369..5830
DNA (462bp) protein (154aa)
Small protein A (TmRNA-binding) n=1 Tax=Rhodanobacter denitrificans RepID=I4WXH5_9GAMM
small protein A (tmRNA-binding)
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
scnpilot_solids1_trim150_scaffold_1147_curated_7
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5847..6128)
DNA (282bp) protein (94aa)
Protein RnfH n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WI77_9GAMM
hypothetical protein
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
scnpilot_solids1_trim150_scaffold_1147_curated_8
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(6121..6552)
DNA (432bp) protein (144aa)
Oligoketide cyclase/lipid transport protein n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WI76_9GAMM
Oligoketide cyclase/lipid transport protein {ECO:0000313|EMBL:EIL99167.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
oligoketide cyclase/lipid transport protein
scnpilot_solids1_trim150_scaffold_1147_curated_9
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6583..7149
DNA (567bp) protein (189aa)
SsrA-binding protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W6T8_9GAMM
SsrA-binding protein {ECO:0000256|HAMAP-Rule:MF_00023, ECO:0000256|SAAS:SAAS00023472}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
SsrA-binding protein
scnpilot_solids1_trim150_scaffold_1147_curated_10
Pseudomonas taeanensis, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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7407..8204
DNA (798bp) protein (266aa)
Two component transcriptional regulator, AraC family n=1 Tax=Thiothrix nivea DSM 5205 RepID=I3BZY3_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:KFX67710.1}; TaxID=1395571 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas taeanensis MS-3.;"
AraC family transcriptional regulator
scnpilot_solids1_trim150_scaffold_1147_curated_11
Chloroflexus aurantiacus, Chloroflexus, Chloroflexales, Chloroflexia, Chloroflexi, Bacteria

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8335..10653
DNA (2319bp) protein (773aa)
Putative uncharacterized protein n=2 Tax=Chloroflexus RepID=A9WJ94_CHLAA
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABY34371.1}; TaxID=324602 species="Bacteria; Chloroflexi; Chloroflexia; Chloroflexales; Chloroflexineae; Chloroflexaceae; Chloroflexus.;" source="Chloroflexus aurantiacus (strain ATCC 29366 / DSM 635 / J-10-fl).;"
scnpilot_solids1_trim150_scaffold_1147_curated_12
R_NC10_66_22, NC10, Bacteria

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10728..11102
DNA (375bp) protein (125aa)
Putative uncharacterized protein n=1 Tax=Burkholderiales bacterium JOSHI_001 RepID=H5WUM0_9BURK
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_NC10_66_22_curated
scnpilot_solids1_trim150_scaffold_1147_curated_13
unknown

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11062..11349
DNA (288bp) protein (96aa)

This feature has no annotations

scnpilot_solids1_trim150_scaffold_1147_curated_14
Kutzneria sp. 744, Kutzneria, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

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11573..12592
DNA (1020bp) protein (340aa)
Uncharacterized protein n=1 Tax=Burkholderia vietnamiensis (strain G4 / LMG 22486) RepID=A4JU19_BURVG
Aspergillopepsin-2 {ECO:0000313|EMBL:EWM11073.1}; TaxID=345341 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Kutzneria.;" source="Kutzneria sp. 744.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_1147_curated_15
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13120..14406
DNA (1287bp) protein (429aa)
O-acetylhomoserine (Thiol)-lyase (EC:2.5.1.49); K01740 O-acetylhomoserine (thiol)-lyase [EC:2.5.1.49]
O-acetylhomoserine/o-acetylserine sulfhydrylase n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VL39_9GAMM
O-acetylhomoserine/o-acetylserine sulfhydrylase {ECO:0000313|EMBL:EIL87930.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
scnpilot_solids1_trim150_scaffold_1147_curated_16
Sphingobium japonicum, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(14423..15421)
DNA (999bp) protein (333aa)
Eukaryotic-type low-affinity urea transporter n=1 Tax=Sphingobium japonicum BiD32 RepID=N1MN59_9SPHN
Eukaryotic-type low-affinity urea transporter {ECO:0000313|EMBL:CCW17042.1}; TaxID=1301087 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium japonicum BiD32.;"
Urea transporter; K08717 urea transporter
Displaying 16 items

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