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scnpilot_solids1_trim150_scaffold_775_curated

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Displaying 16 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids1_trim150_scaffold_775_curated_1
Dyella jiangningensis, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1..402)
DNA (402bp) protein (134aa)
hypothetical protein n=1 Tax=Pseudomonas pyrrocinia RepID=UPI00038187B0
Uncharacterized protein {ECO:0000313|EMBL:AHX12049.1}; TaxID=1379159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella jiangningensis.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_775_curated_2
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(542..1786)
DNA (1245bp) protein (415aa)
Beta-lactamase n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VU04_9GAMM
Beta-lactamase {ECO:0000313|EMBL:EIL90695.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
penicillin-binding protein, beta-lactamase class C
scnpilot_solids1_trim150_scaffold_775_curated_3
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1840..2427
DNA (588bp) protein (196aa)
LemA family protein n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WG83_9GAMM
LemA family protein {ECO:0000313|EMBL:EIL98474.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_775_curated_4
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2475..4418
DNA (1944bp) protein (648aa)
Peptidase M48 Ste24p n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VU06_9GAMM
Peptidase M48 Ste24p {ECO:0000313|EMBL:EIL90697.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
Zn-dependent protease with chaperone function
scnpilot_solids1_trim150_scaffold_775_curated_5
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(4561..4989)
DNA (429bp) protein (143aa)
Signal transduction protein n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WG87_9GAMM
putative signal-transduction protein containing cAMP-binding and CBS domains
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
scnpilot_solids1_trim150_scaffold_775_curated_6
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5027..5803)
DNA (777bp) protein (259aa)
Monofunctional biosynthetic peptidoglycan transglycosylase {ECO:0000256|HAMAP-Rule:MF_00766, ECO:0000256|SAAS:SAAS00055690}; Short=Monofunctional TGase {ECO:0000256|HAMAP-Rule:MF_00766};; EC=2.4.2.- {ECO:0000256|HAMAP-Rule:MF_00766, ECO:0000256|SAAS:SAAS00055699};; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
Monofunctional biosynthetic peptidoglycan transglycosylase n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W1J2_9GAMM
monofunctional biosynthetic peptidoglycan transglycosylase
scnpilot_solids1_trim150_scaffold_775_curated_7
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5902..6798
DNA (897bp) protein (299aa)
Disulfide bond chaperone n=1 Tax=Rhodanobacter denitrificans RepID=I4WSU9_9GAMM
disulfide bond chaperone
33 kDa chaperonin {ECO:0000256|SAAS:SAAS00038673}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids1_trim150_scaffold_775_curated_8
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6854..9691)
DNA (2838bp) protein (946aa)
Diguanylate cyclase n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WG90_9GAMM
Diguanylate cyclase {ECO:0000313|EMBL:EIL98481.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
diguanylate cyclase (GGDEF) domain-containing protein
scnpilot_solids1_trim150_scaffold_775_curated_9
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10022..10945
DNA (924bp) protein (308aa)
Uncharacterized protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W1J5_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL93336.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_775_curated_10
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11053..12807)
DNA (1755bp) protein (585aa)
Phosphoenolpyruvate carboxykinase [GTP] {ECO:0000256|HAMAP-Rule:MF_00452, ECO:0000256|SAAS:SAAS00222031}; Short=PEP carboxykinase {ECO:0000256|HAMAP-Rule:MF_00452};; Short=PEPCK {ECO:0000256|HAMAP-Rule:MF_00452};; EC=4.1.1.32 {ECO:0000256|HAMAP-Rule:MF_00452};; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
Phosphoenolpyruvate carboxykinase [GTP] n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4W9X1_9GAMM
phosphoenolpyruvate carboxykinase (GTP)
scnpilot_solids1_trim150_scaffold_775_curated_11
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12952..13533)
DNA (582bp) protein (194aa)
Transcriptional regulator n=2 Tax=Rhodanobacter denitrificans RepID=I4WSU2_9GAMM
transcriptional regulator
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
scnpilot_solids1_trim150_scaffold_775_curated_12
Dyella japonica, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13870..16359
DNA (2490bp) protein (830aa)
acyl-CoA dehydrogenase n=1 Tax=Dyella japonica RepID=UPI00031552B2
Acyl-CoA dehydrogenase {ECO:0000313|EMBL:AIF49339.1}; TaxID=1217721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella japonica A8.;"
acyl-CoA dehydrogenase
scnpilot_solids1_trim150_scaffold_775_curated_13
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16295..17218)
DNA (924bp) protein (308aa)
Putative metal-dependent membrane protease n=1 Tax=Rhodanobacter denitrificans RepID=M4ND61_9GAMM
putative metal-dependent membrane protease
Putative metal-dependent membrane protease {ECO:0000313|EMBL:AGG87787.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids1_trim150_scaffold_775_curated_14
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17394..19001)
DNA (1608bp) protein (536aa)
Peptide chain release factor 3 n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VU24_9GAMM
Peptide chain release factor 3 {ECO:0000256|HAMAP-Rule:MF_00072, ECO:0000256|SAAS:SAAS00089051}; Short=RF-3 {ECO:0000256|HAMAP-Rule:MF_00072};; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
bacterial peptide chain release factor 3 (bRF-3)
scnpilot_solids1_trim150_scaffold_775_curated_15
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19312..19878
DNA (567bp) protein (189aa)
Putative manganese efflux pump MntP n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W1K7_9GAMM
Putative manganese efflux pump MntP {ECO:0000256|HAMAP-Rule:MF_01521}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_775_curated_16
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19945..21960)
DNA (2016bp) protein (672aa)
Elongation factor G n=1 Tax=Rhodanobacter denitrificans RepID=I4WSS7_9GAMM
translation elongation factor EF-G
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
Displaying 16 items

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