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scnpilot_solids1_trim150_scaffold_670_curated

Search features with annotation key words

Displaying items 1-30 of 58 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids1_trim150_scaffold_670_curated_1
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1..141
DNA (141bp) protein (47aa)
RNA polymerase sigma factor RpoD n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WV09_9GAMM
RNA polymerase, sigma 70 subunit, RpoD
RNA polymerase sigma factor RpoD {ECO:0000256|HAMAP-Rule:MF_00963}; Sigma-70 {ECO:0000256|HAMAP-Rule:MF_00963}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids1_trim150_scaffold_670_curated_2
RLO_Rhodospirillales_67_15, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(572..997)
DNA (426bp) protein (142aa)
hypothetical protein n=1 Tax=Thermus scotoductus RepID=UPI00037AA4DD
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Rhodospirillales_67_15_curated
scnpilot_solids1_trim150_scaffold_670_curated_3
Burkholderiales bacterium JOSHI_001, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1008..1715)
DNA (708bp) protein (236aa)
Putative uncharacterized protein n=1 Tax=Burkholderiales bacterium JOSHI_001 RepID=H5WTZ3_9BURK
Putative uncharacterized protein {ECO:0000313|EMBL:EHR69315.1}; TaxID=864051 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales.;" source="Burkholderiales bacterium JOSHI_001.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_670_curated_4
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2017..3372)
DNA (1356bp) protein (452aa)
L-sorbosone dehydrogenase (EC:1.1.1.-)
L-sorbosone dehydrogenase n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VKJ2_9GAMM
L-sorbosone dehydrogenase {ECO:0000313|EMBL:EIL87733.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
scnpilot_solids1_trim150_scaffold_670_curated_5
Lysobacter concretionis, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3369..3791)
DNA (423bp) protein (141aa)
Uncharacterized protein n=2 Tax=Pseudomonas stutzeri subgroup PF2_PSEST">RepID=I4CPF2_PSEST
hypothetical protein
Membrane protein {ECO:0000313|EMBL:KGM50953.1}; TaxID=1122185 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter concretionis Ko07 = DSM 16239.;"
scnpilot_solids1_trim150_scaffold_670_curated_6
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3876..4655)
DNA (780bp) protein (260aa)
Uncharacterized protein n=1 Tax=Rhodanobacter denitrificans RepID=M4NA54_9GAMM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGG87280.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids1_trim150_scaffold_670_curated_7
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4728..5354)
DNA (627bp) protein (209aa)
Uncharacterized protein n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WDI1_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL97522.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_670_curated_8
Salinisphaera shabanensis, Salinisphaera, Salinisphaerales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5569..6555
DNA (987bp) protein (329aa)
DNA polymerase III subunit alpha protein {ECO:0000313|EMBL:ERJ20460.1}; EC=2.7.7.7 {ECO:0000313|EMBL:ERJ20460.1};; TaxID=1033802 species="Bacteria; Proteobacteria; Gammaproteobacteria; Salinisphaerales; Salinisphaeraceae; Salinisphaera.;" source="Salinisphaera shabanensis E1L3A.;"
DNA polymerase III subunit alpha protein n=1 Tax=Salinisphaera shabanensis E1L3A RepID=U2ERW1_9GAMM
integral membrane protein TerC; K05794 tellurite resistance protein TerC
scnpilot_solids1_trim150_scaffold_670_curated_9
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6564..6908)
DNA (345bp) protein (115aa)
ArsR family transcriptional regulator n=1 Tax=Rhodanobacter sp. 115 RepID=I4W564_9GAMM
ArsR family transcriptional regulator {ECO:0000313|EMBL:EIL94605.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
arsenical resistance operon repressor
scnpilot_solids1_trim150_scaffold_670_curated_10
Burkholderia gladioli, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6919..7410)
DNA (492bp) protein (164aa)
Activator of Hsp90 ATPase 1 family protein n=1 Tax=Burkholderia gladioli (strain BSR3) RepID=F2LPW6_BURGS
activator of Hsp90 ATPase 1 family protein
Activator of Hsp90 ATPase 1 family protein {ECO:0000313|EMBL:AEA64155.1}; TaxID=999541 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia gladioli (strain BSR3).;"
scnpilot_solids1_trim150_scaffold_670_curated_11
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7545..10130)
DNA (2586bp) protein (862aa)
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI000382D88B
outer membrane receptor protein
Outer membrane receptor protein {ECO:0000313|EMBL:AGG87861.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids1_trim150_scaffold_670_curated_12
Marinobacter algicola, Marinobacter, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10408..10893
DNA (486bp) protein (162aa)
Transcriptional regulator involved in mercury resistance operon n=1 Tax=Marinobacter algicola DG893 RepID=A6EUQ2_9ALTE
Transcriptional regulator involved in mercury resistance operon {ECO:0000313|EMBL:EDM49551.1}; TaxID=443152 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Alteromonadaceae; Marinobacter.;" source="Marinobacter algicola DG893.;"
putative transcriptional regulator
scnpilot_solids1_trim150_scaffold_670_curated_13
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10830..11324)
DNA (495bp) protein (165aa)
Peptidase propeptide and ypeb domain-containing protein n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4W100_9GAMM
Peptidase propeptide and ypeb domain-containing protein {ECO:0000313|EMBL:EIL93141.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_670_curated_14
Cystobacter violaceus, Cystobacter, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11440..13950
DNA (2511bp) protein (837aa)
Copper ABC transporter ATPase {ECO:0000313|EMBL:KFA89789.1}; TaxID=1406225 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Cystobacteraceae; Cystobacter.;" source="Cystobacter violaceus Cb vi76.;"
Cation-transporting ATPase id=3551987 bin=GWC2_Proteo_65_14_Ab886 species=Desulfobacterium autotrophicum genus=Desulfobacterium taxon_order=Desulfobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Proteo_65_14_Ab886 organism_group=Deltaproteobacteria
copper-translocating P-type ATPase
scnpilot_solids1_trim150_scaffold_670_curated_15
Mizugakiibacter sediminis, Mizugakiibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13956..15014)
DNA (1059bp) protein (353aa)
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI00036C7B36
Uncharacterized protein {ECO:0000313|EMBL:GAN45731.1}; TaxID=1475481 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Mizugakiibacter.;" source="Mizugakiibacter sediminis.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_670_curated_16
Luteibacter yeojuensis, Luteibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15099..16418)
DNA (1320bp) protein (440aa)
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI0003776B15
Amidohydrolase {ECO:0000313|EMBL:KJV36447.1}; TaxID=345309 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Luteibacter.;" source="Luteibacter yeojuensis.;"
amidohydrolase, imidazolonepropionase
scnpilot_solids1_trim150_scaffold_670_curated_17
GWC2_Pelobacteraceae_58_13_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16614..17009
DNA (396bp) protein (132aa)
DoxX family protein id=4586536 bin=GWC2_Pelobacter_58_13 species=Sideroxydans lithotrophicus genus=Sideroxydans taxon_order=Gallionellales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWC2_Pelobacter_58_13 organism_group=Deltaproteobacteria organism_desc=Good +
DoxX protein; K15977 putative oxidoreductase
Tax=GWC2_Pelobacteraceae_58_13_curated
scnpilot_solids1_trim150_scaffold_670_curated_18
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17309..17824
DNA (516bp) protein (172aa)
3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase {ECO:0000256|HAMAP-Rule:MF_00405, ECO:0000256|SAAS:SAAS00064161}; EC=4.2.1.59 {ECO:0000256|HAMAP-Rule:MF_00405, ECO:0000256|SAAS:SAAS00064166};; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabA {ECO:0000256|HAMAP-Rule:MF_00405}; Beta-hydroxydecanoyl thioester dehydrase {ECO:0000256|HAMAP-Rule:MF_00405}; Trans-2-decenoyl-[acyl-carrier-protein] isomerase {ECO:0000256|HAMAP-Rule:MF_00405}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobact
beta-hydroxyacyl-(acyl carrier protein) dehydratase FabA (EC:4.2.1.59)
3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W0N7_9GAMM
scnpilot_solids1_trim150_scaffold_670_curated_19
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17827..19035
DNA (1209bp) protein (403aa)
3-oxoacyl-(acyl-carrier-protein) synthase (EC:2.3.1.41)
3-oxoacyl-(Acyl-carrier-protein) synthase {ECO:0000313|EMBL:AGG89989.1}; EC=2.3.1.41 {ECO:0000313|EMBL:AGG89989.1};; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
Beta-ketoacyl-[ACP] synthase I n=1 Tax=Rhodanobacter denitrificans RepID=I4WYI9_9GAMM
scnpilot_solids1_trim150_scaffold_670_curated_20
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19147..19620
DNA (474bp) protein (158aa)
DnrO protein n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WTY2_9GAMM
DnrO protein {ECO:0000313|EMBL:EIM02924.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_670_curated_21
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19772..20881)
DNA (1110bp) protein (370aa)
Pyridoxal-5'-phosphate-dependent protein subunit beta n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WTY6_9GAMM
Pyridoxal-5'-phosphate-dependent protein subunit beta {ECO:0000313|EMBL:EIM02928.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
cysteine synthase
scnpilot_solids1_trim150_scaffold_670_curated_22
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21025..21849)
DNA (825bp) protein (275aa)
NADPH-dependent 7-cyano-7-deazaguanine reductase {ECO:0000256|HAMAP-Rule:MF_00817, ECO:0000256|SAAS:SAAS00037296}; EC=1.7.1.13 {ECO:0000256|HAMAP-Rule:MF_00817, ECO:0000256|SAAS:SAAS00001352};; 7-cyano-7-carbaguanine reductase {ECO:0000256|HAMAP-Rule:MF_00817}; NADPH-dependent nitrile oxidoreductase {ECO:0000256|HAMAP-Rule:MF_00817}; PreQ(0) reductase {ECO:0000256|HAMAP-Rule:MF_00817}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" s
NADPH-dependent 7-cyano-7-deazaguanine reductase n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WF04_9GAMM
7-cyano-7-deazaguanine reductase
scnpilot_solids1_trim150_scaffold_670_curated_23
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21993..24314
DNA (2322bp) protein (774aa)
Dipeptidyl aminopeptidase/acylaminoacyl peptidase n=1 Tax=Rhodanobacter denitrificans RepID=M4NI99_9GAMM
Dipeptidyl aminopeptidase/acylaminoacyl peptidase {ECO:0000313|EMBL:AGG90675.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
dipeptidyl aminopeptidase/acylaminoacyl peptidase
scnpilot_solids1_trim150_scaffold_670_curated_24
RIFCSPLOWO2_12_FULL_Betaproteobacteria_64_23_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24415..24720
DNA (306bp) protein (102aa)
Uncharacterized protein n=1 Tax=Mycobacterium tuberculosis RGTB327 RepID=H8HRE3_MYCTU
Conserved protein of unknown function, possible antitoxin
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_64_23_curated
scnpilot_solids1_trim150_scaffold_670_curated_25
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

24845..25108
DNA (264bp) protein (88aa)
hypothetical protein id=3875406 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Tax=GWA2_Rokubacteria_73_35_curated
scnpilot_solids1_trim150_scaffold_670_curated_26
Dyella japonica, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25208..26422)
DNA (1215bp) protein (405aa)
hypothetical protein n=1 Tax=Dyella japonica RepID=UPI0002D94E93
ABC transporter permease {ECO:0000313|EMBL:AIF45917.1}; TaxID=1217721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella japonica A8.;"
ABC-type antimicrobial peptide transport system, permease component
scnpilot_solids1_trim150_scaffold_670_curated_27
Dyella japonica, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26433..27743)
DNA (1311bp) protein (437aa)
hypothetical protein n=1 Tax=Dyella japonica RepID=UPI000309E7F0
ABC transporter ATP-binding protein {ECO:0000313|EMBL:AIF45918.1}; TaxID=1217721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella japonica A8.;"
ABC-type antimicrobial peptide transport system, permease component
scnpilot_solids1_trim150_scaffold_670_curated_28
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27872..30286)
DNA (2415bp) protein (805aa)
Antirepressor regulating drug resistance protein n=1 Tax=Rhodanobacter denitrificans RepID=M4NIE7_9GAMM
antirepressor regulating drug resistance protein
Antirepressor regulating drug resistance protein {ECO:0000313|EMBL:AGG90674.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids1_trim150_scaffold_670_curated_29
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30288..30674)
DNA (387bp) protein (129aa)
Methicillin resistance protein n=1 Tax=Rhodanobacter sp. 115 RepID=I4WCT2_9GAMM
Methicillin resistance protein {ECO:0000313|EMBL:EIL97273.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
putative transcriptional regulator
scnpilot_solids1_trim150_scaffold_670_curated_30
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30820..31158)
DNA (339bp) protein (113aa)
Nitrogen regulatory protein P-II 2 n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WEZ1_9GAMM
Nitrogen regulatory protein P-II 2 {ECO:0000313|EMBL:EIL98032.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
nitrogen regulatory protein PII
Displaying items 1-30 of 58 in total

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