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scnpilot_solids1_trim150_scaffold_345_curated

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Displaying items 1-30 of 40 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids1_trim150_scaffold_345_curated_1
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3..1187
DNA (1185bp) protein (395aa)
twitching motility protein PilT n=1 Tax=Dyella japonica RepID=UPI0002F580EE
pilus retraction protein PilT
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
scnpilot_solids1_trim150_scaffold_345_curated_2
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1245..2000)
DNA (756bp) protein (252aa)
Uncharacterized protein n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VZJ9_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL92640.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_345_curated_3
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2072..3901)
DNA (1830bp) protein (610aa)
Uncharacterized protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VV73_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL91114.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_345_curated_4
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3948..4874)
DNA (927bp) protein (309aa)
Aspartate carbamoyltransferase {ECO:0000256|HAMAP-Rule:MF_00001}; EC=2.1.3.2 {ECO:0000256|HAMAP-Rule:MF_00001};; Aspartate transcarbamylase {ECO:0000256|HAMAP-Rule:MF_00001}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
aspartate carbamoyltransferase (EC:2.1.3.2)
Aspartate carbamoyltransferase n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WJU3_9GAMM
scnpilot_solids1_trim150_scaffold_345_curated_5
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4906..5355)
DNA (450bp) protein (150aa)
Putative Holliday junction resolvase {ECO:0000256|HAMAP-Rule:MF_00651, ECO:0000256|SAAS:SAAS00086483}; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_00651, ECO:0000256|SAAS:SAAS00086510};; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
Putative Holliday junction resolvase n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WJU2_9GAMM
RNAse H-fold protein YqgF
scnpilot_solids1_trim150_scaffold_345_curated_6
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5352..5921)
DNA (570bp) protein (190aa)
UPF0301 protein UUC_00320 n=1 Tax=Rhodanobacter denitrificans RepID=I4WZ35_9GAMM
putative transcriptional regulator
UPF0301 protein R2APBS1_0857 {ECO:0000256|HAMAP-Rule:MF_00758}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids1_trim150_scaffold_345_curated_7
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5974..6828)
DNA (855bp) protein (285aa)
TonB family protein n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VZJ4_9GAMM
TonB family protein {ECO:0000313|EMBL:EIL92635.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
TonB family protein
scnpilot_solids1_trim150_scaffold_345_curated_8
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6831..7811)
DNA (981bp) protein (327aa)
Glutathione synthetase {ECO:0000256|HAMAP-Rule:MF_00162}; EC=6.3.2.3 {ECO:0000256|HAMAP-Rule:MF_00162};; GSH synthetase {ECO:0000256|HAMAP-Rule:MF_00162}; Glutathione synthase {ECO:0000256|HAMAP-Rule:MF_00162}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
glutathione synthetase (EC:6.3.2.3)
Glutathione synthetase n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VZJ3_9GAMM
scnpilot_solids1_trim150_scaffold_345_curated_9
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8194..8556
DNA (363bp) protein (121aa)
Response regulator receiver protein n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WJT8_9GAMM
response regulator with CheY-like receiver domain and winged-helix DNA-binding domain
Response regulator with CheY-like receiver domain and winged-helix DNA-binding domain {ECO:0000313|EMBL:AGG88023.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids1_trim150_scaffold_345_curated_10
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8657..9202
DNA (546bp) protein (182aa)
Chemotaxis signal transduction protein n=1 Tax=Rhodanobacter denitrificans RepID=I4WZ30_9GAMM
chemotaxis signal transduction protein
Chemotaxis signal transduction protein {ECO:0000313|EMBL:AGG88025.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids1_trim150_scaffold_345_curated_11
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9326..11353
DNA (2028bp) protein (676aa)
Pilus biogenesis protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VV64_9GAMM
Pilus biogenesis protein {ECO:0000313|EMBL:EIL91105.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
methyl-accepting chemotaxis protein
scnpilot_solids1_trim150_scaffold_345_curated_12
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11439..17168
DNA (5730bp) protein (1910aa)
Chemotaxis protein cheA n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VZI8_9GAMM
Chemotaxis protein cheA {ECO:0000313|EMBL:EIL92629.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
chemotaxis protein histidine kinase-like protein
scnpilot_solids1_trim150_scaffold_345_curated_13
Dyella japonica, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17161..19104
DNA (1944bp) protein (648aa)
hypothetical protein n=1 Tax=Dyella japonica RepID=UPI0003728CC3
Uncharacterized protein {ECO:0000313|EMBL:AIF47205.1}; TaxID=1217721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella japonica A8.;"
chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain
scnpilot_solids1_trim150_scaffold_345_curated_14
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19101..19592
DNA (492bp) protein (164aa)
Chemotaxis-related protein n=1 Tax=Rhodanobacter denitrificans RepID=I4WZ26_9GAMM
chemotaxis signal transduction protein
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
scnpilot_solids1_trim150_scaffold_345_curated_15
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19597..20331)
DNA (735bp) protein (245aa)
Ribosomal RNA small subunit methyltransferase E {ECO:0000256|PIRNR:PIRNR015601}; EC=2.1.1.193 {ECO:0000256|PIRNR:PIRNR015601};; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
Ribosomal RNA small subunit methyltransferase E n=1 Tax=Rhodanobacter sp. 115 RepID=I4W9X9_9GAMM
RNA methyltransferase, RsmE family
scnpilot_solids1_trim150_scaffold_345_curated_16
Dyella japonica, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20516..20851
DNA (336bp) protein (112aa)
hypothetical protein n=1 Tax=Dyella japonica RepID=UPI00030907A4
Uncharacterized protein {ECO:0000313|EMBL:AIF47208.1}; TaxID=1217721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella japonica A8.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_345_curated_17
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20920..21846
DNA (927bp) protein (309aa)
Type II secretion system protein N (GspN) n=1 Tax=Rhodanobacter denitrificans RepID=M4NES4_9GAMM
type II secretion system protein N (GspN)
Type II secretion system protein N (GspN) {ECO:0000313|EMBL:AGG88033.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids1_trim150_scaffold_345_curated_18
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21856..22413
DNA (558bp) protein (186aa)
Adenosine nucleotide hydrolase NudE n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VV56_9GAMM
Adenosine nucleotide hydrolase NudE {ECO:0000313|EMBL:EIL91097.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
ADP-ribose pyrophosphatase
scnpilot_solids1_trim150_scaffold_345_curated_19
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22410..23222
DNA (813bp) protein (271aa)
3'(2'),5'-bisphosphate nucleotidase (EC:3.1.3.7)
3'(2'),5'-bisphosphate nucleotidase n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WJS5_9GAMM
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
scnpilot_solids1_trim150_scaffold_345_curated_20
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23219..23707
DNA (489bp) protein (163aa)
Nucleoside triphosphate pyrophosphohydrolase n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VV54_9GAMM
MazG family protein
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
scnpilot_solids1_trim150_scaffold_345_curated_21
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23869..24645
DNA (777bp) protein (259aa)
Uncharacterized protein n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WJS2_9GAMM
Protein of unknown function (DUF2807)
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
scnpilot_solids1_trim150_scaffold_345_curated_22
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24807..25334)
DNA (528bp) protein (176aa)
Uncharacterized protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VV53_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL91094.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_345_curated_23
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25483..27957)
DNA (2475bp) protein (825aa)
Putative ABC-type transport system involved in lysophospholipase L1 biosynthesis, permease component n=1 Tax=Rhodanobacter denitrificans RepID=I4WZ14_9GAMM
Putative ABC-type transport system involved in lysophospholipase L1 biosynthesis, permease component {ECO:0000313|EMBL:AGG88041.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
putative ABC-type transport system involved in lysophospholipase L1 biosynthesis, permease component
scnpilot_solids1_trim150_scaffold_345_curated_24
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27960..28796)
DNA (837bp) protein (279aa)
Putative ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component n=1 Tax=Rhodanobacter sp. 115 RepID=I4W8N9_9GAMM
Putative ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component {ECO:0000313|EMBL:EIL95830.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
putative ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component
scnpilot_solids1_trim150_scaffold_345_curated_25
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28846..29316
DNA (471bp) protein (157aa)
Acyl-CoA thioesterase n=1 Tax=Rhodanobacter denitrificans RepID=I4WZ12_9GAMM
lysophospholipase L1-like esterase
Lysophospholipase L1-like esterase {ECO:0000313|EMBL:AGG88043.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids1_trim150_scaffold_345_curated_26
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29372..30103
DNA (732bp) protein (244aa)
Response regulator with CheY-like receiver domain and winged-helix DNA-binding domain n=1 Tax=Rhodanobacter denitrificans RepID=I4WZ11_9GAMM
response regulator with CheY-like receiver domain and winged-helix DNA-binding domain
Response regulator with CheY-like receiver domain and winged-helix DNA-binding domain {ECO:0000313|EMBL:AGG88044.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids1_trim150_scaffold_345_curated_27
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30122..31180
DNA (1059bp) protein (353aa)
Signal transduction histidine kinase n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VZH2_9GAMM
Signal transduction histidine kinase {ECO:0000313|EMBL:EIL92613.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
signal transduction histidine kinase
scnpilot_solids1_trim150_scaffold_345_curated_28
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(31261..32610)
DNA (1350bp) protein (450aa)
Acetate CoA-transferase YdiF {ECO:0000256|PIRNR:PIRNR000858}; EC=2.8.3.8 {ECO:0000256|PIRNR:PIRNR000858};; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
Acetate CoA-transferase YdiF n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VZH1_9GAMM
3-oxoacid CoA-transferase, B subunit/3-oxoacid CoA-transferase, A subunit
scnpilot_solids1_trim150_scaffold_345_curated_29
Dyella jiangningensis, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(32805..33614)
DNA (810bp) protein (270aa)
hypothetical protein n=1 Tax=Dyella japonica RepID=UPI0002D4D9CA
Uncharacterized protein {ECO:0000313|EMBL:AHX16365.1}; TaxID=1379159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella jiangningensis.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_345_curated_30
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(33833..34405)
DNA (573bp) protein (191aa)
Uncharacterized protein n=1 Tax=Rhodanobacter denitrificans RepID=I4WZ05_9GAMM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGG88050.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
Displaying items 1-30 of 40 in total

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