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scnpilot_solids1_trim150_scaffold_1769_curated

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Displaying 16 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids1_trim150_scaffold_1769_curated_1
Dyella japonica, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(1..1203)
DNA (1203bp) protein (401aa)
ribonucleoside-diphosphate reductase; K00525 ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
ribonucleotide reductase n=1 Tax=Dyella japonica RepID=UPI000314F8EA
NrdJa {ECO:0000313|EMBL:AIF49542.1}; TaxID=1217721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella japonica A8.;"
scnpilot_solids1_trim150_scaffold_1769_curated_2
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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1627..3030
DNA (1404bp) protein (468aa)
Periplasmic serine protease, Do/DeqQ family n=1 Tax=Rhodanobacter denitrificans RepID=M4NAL9_9GAMM
periplasmic serine protease, Do/DeqQ family
Periplasmic serine protease, Do/DeqQ family {ECO:0000313|EMBL:AGG87585.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids1_trim150_scaffold_1769_curated_3
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3176..4360
DNA (1185bp) protein (395aa)
Phosphate ABC transporter periplasmic protein n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VN55_9GAMM
Phosphate ABC transporter periplasmic protein {ECO:0000313|EMBL:EIL88646.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
ABC-type phosphate transport system, periplasmic component
scnpilot_solids1_trim150_scaffold_1769_curated_4
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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4467..5843
DNA (1377bp) protein (459aa)
Leucine aminopeptidase n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WFS8_9GAMM
Leucine aminopeptidase {ECO:0000313|EMBL:EIL98319.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
leucyl aminopeptidase
scnpilot_solids1_trim150_scaffold_1769_curated_5
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(5899..8154)
DNA (2256bp) protein (752aa)
C-terminal processing peptidase n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VQQ4_9GAMM
C-terminal processing peptidase
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
scnpilot_solids1_trim150_scaffold_1769_curated_6
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8381..9082)
DNA (702bp) protein (234aa)
Octanoyltransferase {ECO:0000256|HAMAP-Rule:MF_00013, ECO:0000256|PIRNR:PIRNR016262}; EC=2.3.1.181 {ECO:0000256|HAMAP-Rule:MF_00013, ECO:0000256|PIRNR:PIRNR016262};; Lipoate-protein ligase B {ECO:0000256|HAMAP-Rule:MF_00013}; Lipoyl/octanoyl transferase {ECO:0000256|HAMAP-Rule:MF_00013}; Octanoyl-[acyl-carrier-protein]-protein N-octanoyltransferase {ECO:0000256|HAMAP-Rule:MF_00013}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" sourc
Octanoyltransferase n=1 Tax=Rhodanobacter denitrificans RepID=M4NAL4_9GAMM
lipoate-protein ligase B
scnpilot_solids1_trim150_scaffold_1769_curated_7
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9082..9375)
DNA (294bp) protein (98aa)
Uncharacterized protein n=1 Tax=Rhodanobacter denitrificans RepID=I4WCB0_9GAMM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EIL88640.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
scnpilot_solids1_trim150_scaffold_1769_curated_8
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9372..10613)
DNA (1242bp) protein (414aa)
D-alanyl-D-alanine carboxypeptidase n=1 Tax=Dyella ginsengisoli RepID=UPI0003455C50
D-alanyl-D-alanine carboxypeptidase {ECO:0000313|EMBL:EIL89549.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
penicillin-binding protein 6
scnpilot_solids1_trim150_scaffold_1769_curated_9
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10692..11582)
DNA (891bp) protein (297aa)
Rare lipoprotein A n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VN47_9GAMM
Rare lipoprotein A {ECO:0000313|EMBL:EIL98329.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
rare lipoprotein A
scnpilot_solids1_trim150_scaffold_1769_curated_10
Dyella jiangningensis, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11579..12580)
DNA (1002bp) protein (334aa)
lytic murein transglycosylase n=1 Tax=Dyella japonica RepID=UPI0003132FF9
Lytic murein transglycosylase {ECO:0000313|EMBL:AHX15728.1}; TaxID=1379159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella jiangningensis.;"
lytic murein transglycosylase B
scnpilot_solids1_trim150_scaffold_1769_curated_11
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12669..13784)
DNA (1116bp) protein (372aa)
Rod shape-determining protein RodA n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WFU0_9GAMM
cell elongation-specific peptidoglycan biosynthesis regulator RodA
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
scnpilot_solids1_trim150_scaffold_1769_curated_12
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13781..15796)
DNA (2016bp) protein (672aa)
peptidoglycan glycosyltransferase (EC:2.4.1.129)
Penicillin-binding protein 2 n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VN44_9GAMM
Penicillin-binding protein 2 {ECO:0000313|EMBL:EIL88635.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
scnpilot_solids1_trim150_scaffold_1769_curated_13
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15793..16278)
DNA (486bp) protein (162aa)
Rod shape-determining protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VQR3_9GAMM
Rod shape-determining protein {ECO:0000313|EMBL:EIL89554.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
rod shape-determining protein MreD
scnpilot_solids1_trim150_scaffold_1769_curated_14
RIFOXYA1_FULL_Xanthomonadales_69_10_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16275..17267)
DNA (993bp) protein (331aa)
Cell shape-determining protein MreC n=1 Tax=Rhodanobacter denitrificans RepID=M4NCQ3_9GAMM
rod shape-determining protein MreC
Tax=RIFOXYA1_FULL_Xanthomonadales_69_10_curated
scnpilot_solids1_trim150_scaffold_1769_curated_15
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17289..18335)
DNA (1047bp) protein (349aa)
Rod shape-determining protein MreB n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WFU4_9GAMM
rod shape-determining protein MreB
Rod shape-determining protein MreB {ECO:0000313|EMBL:EIL98335.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
scnpilot_solids1_trim150_scaffold_1769_curated_16
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18507..19529
DNA (1023bp) protein (341aa)
Sugar kinase n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VN40_9GAMM
Sugar kinase {ECO:0000313|EMBL:EIL88631.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
sugar kinase, ribokinase
Displaying 16 items

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