ggKbase home page

scnpilot_solids1_trim150_scaffold_486_curated

Search features with annotation key words

Displaying items 1-30 of 39 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids1_trim150_scaffold_486_curated_1
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1..1524
-----------------
DNA (1524bp)
protein (508aa)
acriflavine resistance protein B n=1 Tax=Dyella ginsengisoli RepID=UPI0003474D2A
acriflavin resistance protein
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
scnpilot_solids1_trim150_scaffold_486_curated_2
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1630..2547
-----------------
DNA (918bp)
protein (306aa)
hydroxymethylbilane synthase (EC:2.5.1.61)
Porphobilinogen deaminase {ECO:0000256|HAMAP-Rule:MF_00260}; Short=PBG {ECO:0000256|HAMAP-Rule:MF_00260};; EC=2.5.1.61 {ECO:0000256|HAMAP-Rule:MF_00260};; Hydroxymethylbilane synthase {ECO:0000256|HAMAP-Rule:MF_00260}; Pre-uroporphyrinogen synthase {ECO:0000256|HAMAP-Rule:MF_00260}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
Porphobilinogen deaminase n=1 Tax=Rhodanobacter denitrificans RepID=I4WND3_9GAMM
scnpilot_solids1_trim150_scaffold_486_curated_3
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2621..3427)
-----------------
DNA (807bp)
protein (269aa)
Putative salt-induced outer membrane protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VUH9_9GAMM
Putative salt-induced outer membrane protein {ECO:0000313|EMBL:EIL90870.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
putative salt-induced outer membrane protein
scnpilot_solids1_trim150_scaffold_486_curated_4
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3610..3819)
-----------------
DNA (210bp)
protein (70aa)
Cold acclimation protein B n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VLU2_9GAMM
Cold acclimation protein B {ECO:0000313|EMBL:EIL88183.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
cold shock protein
scnpilot_solids1_trim150_scaffold_486_curated_5
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4028..4855
-----------------
DNA (828bp)
protein (276aa)
Exodeoxyribonuclease III (EC:3.1.11.2)
Exodeoxyribonuclease III n=1 Tax=Rhodanobacter denitrificans RepID=I4WNB1_9GAMM
Exodeoxyribonuclease III {ECO:0000313|EMBL:EIL90837.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
scnpilot_solids1_trim150_scaffold_486_curated_6
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4852..5535
-----------------
DNA (684bp)
protein (228aa)
YecA family protein n=1 Tax=Rhodanobacter denitrificans RepID=M4NJC8_9GAMM
yecA family protein
YecA family protein {ECO:0000313|EMBL:AGG90984.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids1_trim150_scaffold_486_curated_7
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5912..6382
-----------------
DNA (471bp)
protein (157aa)
hypothetical protein n=1 Tax=Dyella ginsengisoli RepID=UPI00036E83C5
Membrane protease {ECO:0000313|EMBL:EIL88177.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
membrane protease subunit, stomatin/prohibitin
scnpilot_solids1_trim150_scaffold_486_curated_8
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6710..7339
-----------------
DNA (630bp)
protein (210aa)
16S rRNA m(7)G-527 methyltransferase (EC:2.1.1.-)
Ribosomal RNA small subunit methyltransferase G n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VLT5_9GAMM
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
scnpilot_solids1_trim150_scaffold_486_curated_9
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7396..8250
-----------------
DNA (855bp)
protein (285aa)
Chromosome partitioning protein n=1 Tax=Rhodanobacter denitrificans RepID=I4WNC5_9GAMM
ATPase involved in chromosome partitioning
Chromosome partitioning protein {ECO:0000313|EMBL:EIL88175.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
scnpilot_solids1_trim150_scaffold_486_curated_10
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8253..9122
-----------------
DNA (870bp)
protein (290aa)
ParB-like partition protein n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VLT3_9GAMM
ParB-like partition protein {ECO:0000313|EMBL:EIL88174.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
ParB-like partition protein
scnpilot_solids1_trim150_scaffold_486_curated_11
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9278..9994
-----------------
DNA (717bp)
protein (239aa)
Glycosyl transferase family protein n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VLE2_9GAMM
Glycosyl transferase family protein {ECO:0000313|EMBL:EIL88033.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
glycosyl transferase
scnpilot_solids1_trim150_scaffold_486_curated_12
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10082..10450
-----------------
DNA (369bp)
protein (123aa)
Uncharacterized protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VUH4_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL90865.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_486_curated_13
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10474..11406)
-----------------
DNA (933bp)
protein (311aa)
Putative esterase of the alpha-beta hydrolase superfamily protein n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VLE4_9GAMM
Putative esterase of the alpha-beta hydrolase superfamily protein {ECO:0000313|EMBL:EIL88035.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
putative esterase of the alpha-beta hydrolase superfamily
scnpilot_solids1_trim150_scaffold_486_curated_14
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11594..13366
-----------------
DNA (1773bp)
protein (591aa)
Sodium (Na+) symporter n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VLE5_9GAMM
Sodium (Na+) symporter {ECO:0000313|EMBL:EIL88036.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
sodium (Na+) symporter
scnpilot_solids1_trim150_scaffold_486_curated_15
Dyella jiangningensis, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13385..14362)
-----------------
DNA (978bp)
protein (326aa)
transcriptional regulator n=1 Tax=Dyella ginsengisoli RepID=UPI00034C991E
Transcriptional regulator {ECO:0000313|EMBL:AHX15258.1}; TaxID=1379159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella jiangningensis.;"
putative transcriptional regulator
scnpilot_solids1_trim150_scaffold_486_curated_16
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14422..16467)
-----------------
DNA (2046bp)
protein (682aa)
Zn-dependent oligopeptidase n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VUE4_9GAMM
Zn-dependent oligopeptidase {ECO:0000313|EMBL:EIL90835.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
Zn-dependent oligopeptidase
scnpilot_solids1_trim150_scaffold_486_curated_17
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16544..17140
-----------------
DNA (597bp)
protein (199aa)
Transferase n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VUE3_9GAMM
isoleucine patch superfamily enzyme, carbonic anhydrase/acetyltransferase
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
scnpilot_solids1_trim150_scaffold_486_curated_18
Dyella jiangningensis, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17173..18057)
-----------------
DNA (885bp)
protein (295aa)
Shikimate dehydrogenase (NADP(+)) {ECO:0000256|HAMAP-Rule:MF_00222, ECO:0000256|SAAS:SAAS00228653}; Short=SDH {ECO:0000256|HAMAP-Rule:MF_00222};; EC=1.1.1.25 {ECO:0000256|HAMAP-Rule:MF_00222, ECO:0000256|SAAS:SAAS00216361};; TaxID=1379159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella jiangningensis.;"
shikimate dehydrogenase (EC:1.1.1.25)
shikimate 5-dehydrogenase n=1 Tax=Dyella japonica RepID=UPI0002DE9687
scnpilot_solids1_trim150_scaffold_486_curated_19
Dyella jiangningensis, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18179..18448
-----------------
DNA (270bp)
protein (90aa)
Uncharacterized protein n=1 Tax=Rhodanobacter denitrificans RepID=I4WCI3_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:AHX15279.1}; TaxID=1379159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella jiangningensis.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_486_curated_20
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18503..19987)
-----------------
DNA (1485bp)
protein (495aa)
Glutathione synthase/ribosomal protein S6 modification protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VUD5_9GAMM
Glutathione synthase/ribosomal protein S6 modification protein {ECO:0000313|EMBL:EIL90826.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
glutathione synthase/ribosomal protein S6 modification enzyme (glutaminyl transferase)
scnpilot_solids1_trim150_scaffold_486_curated_21
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20207..20749
-----------------
DNA (543bp)
protein (181aa)
Acetyltransferase n=1 Tax=Rhodanobacter denitrificans RepID=I4WCI1_9GAMM
acetyltransferase
Acetyltransferase {ECO:0000313|EMBL:AGG90994.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids1_trim150_scaffold_486_curated_22
RIFOXYA1_FULL_Xanthomonadales_68_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20770..21246
-----------------
DNA (477bp)
protein (159aa)
NUDIX domain-containing protein n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WML5_9GAMM
ADP-ribose pyrophosphatase
Tax=RIFOXYA1_FULL_Xanthomonadales_68_6_curated
scnpilot_solids1_trim150_scaffold_486_curated_23
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21254..21943)
-----------------
DNA (690bp)
protein (230aa)
Uncharacterized protein n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WBT2_9GAMM
hypothetical protein
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
scnpilot_solids1_trim150_scaffold_486_curated_24
unknown

Not on your lists

22127..22414
-----------------
DNA (288bp)
protein (96aa)

This feature has no annotations

scnpilot_solids1_trim150_scaffold_486_curated_25
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22395..23081
-----------------
DNA (687bp)
protein (229aa)
Uncharacterized protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VUD1_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL90822.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_486_curated_26
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23083..23970
-----------------
DNA (888bp)
protein (296aa)
Tyrosine recombinase XerC n=1 Tax=Rhodanobacter denitrificans RepID=M4NN08_9GAMM
tyrosine recombinase XerC subunit
Tyrosine recombinase XerC {ECO:0000256|HAMAP-Rule:MF_01808}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids1_trim150_scaffold_486_curated_27
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24095..24661
-----------------
DNA (567bp)
protein (189aa)
ATP-dependent protease subunit HslV {ECO:0000256|HAMAP-Rule:MF_00248, ECO:0000256|SAAS:SAAS00019556}; EC=3.4.25.2 {ECO:0000256|HAMAP-Rule:MF_00248, ECO:0000256|SAAS:SAAS00019493};; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
ATP-dependent protease subunit HslV n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VUC9_9GAMM
HslV component of HslUV peptidase
scnpilot_solids1_trim150_scaffold_486_curated_28
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24770..26110
-----------------
DNA (1341bp)
protein (447aa)
ATP-dependent protease ATPase subunit HslU n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VLG9_9GAMM
ATP-dependent protease ATPase subunit HslU {ECO:0000256|HAMAP-Rule:MF_00249, ECO:0000256|SAAS:SAAS00089650}; Unfoldase HslU {ECO:0000256|HAMAP-Rule:MF_00249}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
ATP-dependent protease HslVU, ATPase subunit
scnpilot_solids1_trim150_scaffold_486_curated_29
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26148..26762
-----------------
DNA (615bp)
protein (205aa)
Uncharacterized protein n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VLH0_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL88061.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_486_curated_30
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26840..28207)
-----------------
DNA (1368bp)
protein (456aa)
tRNA modification GTPase MnmE {ECO:0000256|HAMAP-Rule:MF_00379}; EC=3.6.-.- {ECO:0000256|HAMAP-Rule:MF_00379};; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
tRNA modification GTPase MnmE n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VUB8_9GAMM
tRNA modification GTPase trmE
Displaying items 1-30 of 39 in total

View Taxonomy