ggKbase home page

scnpilot_solids1_trim150_scaffold_536_curated

Search features with annotation key words

Displaying items 1-30 of 55 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids1_trim150_scaffold_536_curated_1
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2..325
DNA (324bp) protein (108aa)
Ferredoxin n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W1D1_9GAMM
ferredoxin
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
scnpilot_solids1_trim150_scaffold_536_curated_2
Dyella jiangningensis, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(395..1408)
DNA (1014bp) protein (338aa)
Glyceraldehyde-3-phosphate dehydrogenase {ECO:0000256|RuleBase:RU361160}; EC=1.2.1.- {ECO:0000256|RuleBase:RU361160};; TaxID=1379159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella jiangningensis.;"
glyceraldehyde-3-phosphate dehydrogenase, type I; K00134 glyceraldehyde 3-phosphate dehydrogenase [EC:1.2.1.12]
glyceraldehyde-3-phosphate dehydrogenase n=1 Tax=Dyella japonica RepID=UPI0003162A4A
scnpilot_solids1_trim150_scaffold_536_curated_3
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1630..2499
DNA (870bp) protein (290aa)
S1/P1 Nuclease n=1 Tax=Rhodanobacter denitrificans RepID=I4WME4_9GAMM
S1/P1 Nuclease
S1/P1 Nuclease {ECO:0000313|EMBL:AGG87719.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids1_trim150_scaffold_536_curated_4
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2509..3975
DNA (1467bp) protein (489aa)
Pyruvate kinase {ECO:0000256|RuleBase:RU000504}; EC=2.7.1.40 {ECO:0000256|RuleBase:RU000504};; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
Pyruvate kinase n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W1D5_9GAMM
pyruvate kinase
scnpilot_solids1_trim150_scaffold_536_curated_5
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4059..4499
DNA (441bp) protein (147aa)
TonB family protein n=1 Tax=Rhodanobacter denitrificans RepID=I4WME2_9GAMM
Gram-negative bacterial tonB protein
Gram-negative bacterial tonB protein {ECO:0000313|EMBL:AGG87721.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids1_trim150_scaffold_536_curated_6
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4636..5646
DNA (1011bp) protein (337aa)
fructose-1,6-bisphosphate aldolase (EC:4.1.2.13)
Fructose-bisphosphate aldolase n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VX86_9GAMM
Fructose-bisphosphate aldolase {ECO:0000313|EMBL:EIL91827.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
scnpilot_solids1_trim150_scaffold_536_curated_7
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5765..6358)
DNA (594bp) protein (198aa)
Opacity protein n=1 Tax=Rhodanobacter denitrificans RepID=M4NAZ9_9GAMM
opacity protein
Opacity protein {ECO:0000313|EMBL:AGG87724.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids1_trim150_scaffold_536_curated_8
Dyella japonica, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6752..7933)
DNA (1182bp) protein (394aa)
Phosphoglycerate kinase {ECO:0000256|HAMAP-Rule:MF_00145, ECO:0000256|RuleBase:RU000532}; EC=2.7.2.3 {ECO:0000256|HAMAP-Rule:MF_00145, ECO:0000256|RuleBase:RU000532};; TaxID=1217721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella japonica A8.;"
3-phosphoglycerate kinase (EC:2.7.2.3)
phosphoglycerate kinase n=1 Tax=Dyella japonica RepID=UPI00036F3147
scnpilot_solids1_trim150_scaffold_536_curated_9
Dyella japonica, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8126..8782
DNA (657bp) protein (219aa)
maleylacetoacetate isomerase (EC:5.2.1.2)
hypothetical protein n=1 Tax=Dyella japonica RepID=UPI0002E405B0
Maleylacetoacetate isomerase {ECO:0000313|EMBL:AIF49398.1}; TaxID=1217721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella japonica A8.;"
scnpilot_solids1_trim150_scaffold_536_curated_10
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8791..9903)
DNA (1113bp) protein (371aa)
Pilus retraction protein PilT n=2 Tax=Rhodanobacter denitrificans RepID=M4NAW7_9GAMM
pilus retraction protein PilT
Pilus retraction protein PilT {ECO:0000313|EMBL:AGG87730.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids1_trim150_scaffold_536_curated_11
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9985..10647
DNA (663bp) protein (221aa)
Uncharacterized protein n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VTJ6_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL90537.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_536_curated_12
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10644..11333
DNA (690bp) protein (230aa)
OmpA/MotB domain-containing protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W1E6_9GAMM
hypothetical protein
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
scnpilot_solids1_trim150_scaffold_536_curated_13
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11672..11899
DNA (228bp) protein (76aa)
Uncharacterized protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W1E7_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL93288.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_536_curated_14
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12075..13445
DNA (1371bp) protein (457aa)
cysteine synthase (EC:4.2.1.22)
Cysteine synthase n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VTJ9_9GAMM
Cysteine synthase {ECO:0000313|EMBL:EIL90540.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
scnpilot_solids1_trim150_scaffold_536_curated_15
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13539..15368
DNA (1830bp) protein (610aa)
Glutamine--fructose-6-phosphate aminotransferase [isomerizing] {ECO:0000256|HAMAP-Rule:MF_00164, ECO:0000256|SAAS:SAAS00039584}; EC=2.6.1.16 {ECO:0000256|HAMAP-Rule:MF_00164};; D-fructose-6-phosphate amidotransferase {ECO:0000256|HAMAP-Rule:MF_00164}; GFAT {ECO:0000256|HAMAP-Rule:MF_00164}; Glucosamine-6-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00164}; Hexosephosphate aminotransferase {ECO:0000256|HAMAP-Rule:MF_00164}; L-glutamine--D-fructose-6-phosphate amidotransferase {ECO:0000256|HAMAP-Rule:MF_0016
Glutamine--fructose-6-phosphate aminotransferase [isomerizing] n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VTK0_9GAMM
glucosamine--fructose-6-phosphate aminotransferase, isomerizing
scnpilot_solids1_trim150_scaffold_536_curated_16
Dyella japonica, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15507..16310)
DNA (804bp) protein (268aa)
hypothetical protein n=1 Tax=Dyella japonica RepID=UPI0003742292
Uncharacterized protein {ECO:0000313|EMBL:AIF46556.1}; TaxID=1217721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella japonica A8.;"
putative lipoprotein
scnpilot_solids1_trim150_scaffold_536_curated_17
Burkholderia sp. CCGE1003, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16446..18287)
DNA (1842bp) protein (614aa)
hypothetical protein n=1 Tax=Xanthomonadaceae RepID=UPI000299D2AC
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADN57932.1}; TaxID=640512 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia sp. (strain CCGE1003).;"
scnpilot_solids1_trim150_scaffold_536_curated_18
Stenotrophomonas rhizophila, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18345..18797)
DNA (453bp) protein (151aa)
hypothetical protein n=1 Tax=Stenotrophomonas maltophilia RepID=UPI0003670285
Uncharacterized protein {ECO:0000313|EMBL:AHY58847.1}; TaxID=216778 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas rhizophila.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_536_curated_19
Dyella jiangningensis, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18794..19657)
DNA (864bp) protein (288aa)
hypothetical protein n=1 Tax=Dyella japonica RepID=UPI00030A329F
Uncharacterized protein {ECO:0000313|EMBL:AHX14998.1}; TaxID=1379159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella jiangningensis.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_536_curated_20
Dyella japonica, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19659..20603)
DNA (945bp) protein (315aa)
hypothetical protein n=1 Tax=Dyella japonica RepID=UPI0002E8A642
Uncharacterized protein {ECO:0000313|EMBL:AIF46557.1}; TaxID=1217721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella japonica A8.;"
type II secretion system F domain-containing protein; K12511 tight adherence protein C
scnpilot_solids1_trim150_scaffold_536_curated_21
Dyella japonica, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20612..21544)
DNA (933bp) protein (311aa)
hypothetical protein n=1 Tax=Dyella japonica RepID=UPI0002FEE323
Uncharacterized protein {ECO:0000313|EMBL:AIF46558.1}; TaxID=1217721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella japonica A8.;"
type II secretion system protein; K12510 tight adherence protein B
scnpilot_solids1_trim150_scaffold_536_curated_22
Dyella jiangningensis, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21541..22914)
DNA (1374bp) protein (458aa)
hypothetical protein n=1 Tax=Dyella japonica RepID=UPI0002F494E5
Pilus assembly protein CpaF {ECO:0000313|EMBL:AHX14995.1}; TaxID=1379159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella jiangningensis.;"
type II secretion system protein E; K02283 pilus assembly protein CpaF
scnpilot_solids1_trim150_scaffold_536_curated_23
Dyella jiangningensis, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22914..24134)
DNA (1221bp) protein (407aa)
hypothetical protein n=1 Tax=Dyella japonica RepID=UPI0002F0D076
Fimbrial protein {ECO:0000313|EMBL:AHX14994.1}; TaxID=1379159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella jiangningensis.;"
pilus assembly protein; K02282 pilus assembly protein CpaE
scnpilot_solids1_trim150_scaffold_536_curated_24
Dyella jiangningensis, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24196..25554)
DNA (1359bp) protein (453aa)
hypothetical protein n=1 Tax=Dyella japonica RepID=UPI00035EA660
Membrane protein {ECO:0000313|EMBL:AHX14993.1}; TaxID=1379159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella jiangningensis.;"
type II and III secretion system protein; K02280 pilus assembly protein CpaC
scnpilot_solids1_trim150_scaffold_536_curated_25
Stenotrophomonas sp. RIT309, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25551..26567)
DNA (1017bp) protein (339aa)
Flp pilus assembly protein CpaB n=1 Tax=Pseudomonas geniculata RepID=UPI00029B42A1
Flp pilus assembly protein CpaB {ECO:0000313|EMBL:EZP46859.1}; TaxID=1470590 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas sp. RIT309.;"
Flp pilus assembly protein CpaB; K02279 pilus assembly protein CpaB
scnpilot_solids1_trim150_scaffold_536_curated_26
Dyella jiangningensis, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26600..27103)
DNA (504bp) protein (168aa)
hypothetical protein n=1 Tax=Dyella japonica RepID=UPI000378E280
Pilus assembly protein TadE {ECO:0000313|EMBL:AHX14991.1}; TaxID=1379159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella jiangningensis.;"
TadE family protein
scnpilot_solids1_trim150_scaffold_536_curated_27
Dyella jiangningensis, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27100..27642)
DNA (543bp) protein (181aa)
putative transmembrane peptidase; K02278 prepilin peptidase CpaA [EC:3.4.23.43]
hypothetical protein n=1 Tax=Dyella japonica RepID=UPI0003804BBB
Peptidase {ECO:0000313|EMBL:AHX14990.1}; TaxID=1379159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella jiangningensis.;"
scnpilot_solids1_trim150_scaffold_536_curated_28
Stenotrophomonas sp. RIT309, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27799..27972)
DNA (174bp) protein (58aa)
pilin n=1 Tax=Stenotrophomonas maltophilia RepID=UPI00031EF913
Flp/Fap pilin component superfamily protein {ECO:0000313|EMBL:EZP46862.1}; TaxID=1470590 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas sp. RIT309.;"
Flp/Fap pilin component; K02651 pilus assembly protein Flp/PilA
scnpilot_solids1_trim150_scaffold_536_curated_29
Dyella jiangningensis, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28595..29587
DNA (993bp) protein (331aa)
hypothetical protein n=1 Tax=Dyella japonica RepID=UPI00031B94EC
AraC family transcriptional regulator {ECO:0000313|EMBL:AHX14988.1}; TaxID=1379159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella jiangningensis.;"
AraC family transcriptional regulator
scnpilot_solids1_trim150_scaffold_536_curated_30
unknown

Not on your lists

comp(29866..30939)
DNA (1074bp) protein (358aa)

This feature has no annotations

Displaying items 1-30 of 55 in total

View Taxonomy