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scnpilot_solids1_trim150_scaffold_242_curated

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Displaying items 1-30 of 76 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids1_trim150_scaffold_242_curated_1
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2..1114)
DNA (1113bp) protein (371aa)
60 kDa chaperonin n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WAV2_9GAMM
60 kDa chaperonin {ECO:0000256|HAMAP-Rule:MF_00600, ECO:0000256|RuleBase:RU000419}; GroEL protein {ECO:0000256|HAMAP-Rule:MF_00600}; Protein Cpn60 {ECO:0000256|HAMAP-Rule:MF_00600}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
chaperonin GroL
scnpilot_solids1_trim150_scaffold_242_curated_2
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1228..1521)
DNA (294bp) protein (98aa)
10 kDa chaperonin n=1 Tax=Rhodanobacter sp. 115 RepID=I4W463_9GAMM
10 kDa chaperonin {ECO:0000256|HAMAP-Rule:MF_00580, ECO:0000256|RuleBase:RU000535}; GroES protein {ECO:0000256|HAMAP-Rule:MF_00580}; Protein Cpn10 {ECO:0000256|HAMAP-Rule:MF_00580}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
Co-chaperonin GroES
scnpilot_solids1_trim150_scaffold_242_curated_3
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1840..3705
DNA (1866bp) protein (622aa)
C-type cytochrome biogenesis protein n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VPV6_9GAMM
thiol:disulfide interchange protein
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
scnpilot_solids1_trim150_scaffold_242_curated_4
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3839..4294
DNA (456bp) protein (152aa)
3-dehydroquinate dehydratase {ECO:0000256|HAMAP-Rule:MF_00169, ECO:0000256|SAAS:SAAS00027752}; Short=3-dehydroquinase {ECO:0000256|HAMAP-Rule:MF_00169};; EC=4.2.1.10 {ECO:0000256|HAMAP-Rule:MF_00169, ECO:0000256|SAAS:SAAS00027752};; Type II DHQase {ECO:0000256|HAMAP-Rule:MF_00169}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
3-dehydroquinate dehydratase (EC:4.2.1.10)
3-dehydroquinate dehydratase n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VPV8_9GAMM
scnpilot_solids1_trim150_scaffold_242_curated_5
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4365..4826
DNA (462bp) protein (154aa)
Acetyl-CoA carboxylase biotin carboxyl carrier protein subunit {ECO:0000313|EMBL:EIL89250.1}; EC=6.4.1.2 {ECO:0000313|EMBL:EIL89250.1};; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
Acetyl-CoA carboxylase biotin carboxyl carrier protein subunit n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VPV9_9GAMM
biotin carboxyl carrier protein
scnpilot_solids1_trim150_scaffold_242_curated_6
RIFOXYA1_FULL_Xanthomonadales_68_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4842..5225
DNA (384bp) protein (128aa)
Uncharacterized protein n=2 Tax=Xanthomonas RepID=Q3BY68_XANC5
hypothetical protein
Tax=RIFOXYA1_FULL_Xanthomonadales_68_6_curated
scnpilot_solids1_trim150_scaffold_242_curated_7
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5275..6642
DNA (1368bp) protein (456aa)
Acetyl-CoA carboxylase biotin carboxylase subunit n=1 Tax=Rhodanobacter denitrificans RepID=I4WHL3_9GAMM
acetyl-CoA carboxylase, biotin carboxylase subunit
Acetyl-CoA carboxylase, biotin carboxylase subunit {ECO:0000313|EMBL:AGG87515.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids1_trim150_scaffold_242_curated_8
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6655..7584
DNA (930bp) protein (310aa)
Ribosomal protein L11 methyltransferase {ECO:0000256|HAMAP-Rule:MF_00735, ECO:0000256|SAAS:SAAS00189466}; Short=L11 Mtase {ECO:0000256|HAMAP-Rule:MF_00735};; EC=2.1.1.- {ECO:0000256|HAMAP-Rule:MF_00735, ECO:0000256|SAAS:SAAS00189468};; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
(LSU ribosomal protein L11P)-lysine N-methyltransferase (EC:2.1.1.-)
Ribosomal protein L11 methyltransferase n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WAU2_9GAMM
scnpilot_solids1_trim150_scaffold_242_curated_9
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7666..8517
DNA (852bp) protein (284aa)
Uncharacterized protein n=1 Tax=Rhodanobacter denitrificans RepID=M4NDK3_9GAMM
Protein of unknown function (DUF3426)
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
scnpilot_solids1_trim150_scaffold_242_curated_10
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8663..8971
DNA (309bp) protein (103aa)
Fis family transcriptional regulator n=1 Tax=Dyella japonica RepID=UPI0003792F8A
Factor for inversion stimulation Fis, transcriptional activator
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
scnpilot_solids1_trim150_scaffold_242_curated_11
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8982..10592
DNA (1611bp) protein (537aa)
IMP cyclohydrolase n=1 Tax=Dyella ginsengisoli RepID=UPI000349046A
Bifunctional purine biosynthesis protein PurH {ECO:0000256|HAMAP-Rule:MF_00139, ECO:0000256|SAAS:SAAS00010516}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase
scnpilot_solids1_trim150_scaffold_242_curated_12
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10677..11387
DNA (711bp) protein (237aa)
Glutathione S-transferase n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VPW6_9GAMM
Glutathione S-transferase {ECO:0000313|EMBL:EIL89257.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_242_curated_13
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11458..11928)
DNA (471bp) protein (157aa)
Uncharacterized protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W2U9_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL93790.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
Protein of unknown function (DUF2782)
scnpilot_solids1_trim150_scaffold_242_curated_14
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12066..14834
DNA (2769bp) protein (923aa)
DNA polymerase I (EC:2.7.7.7)
DNA polymerase I n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W2V0_9GAMM
DNA polymerase I {ECO:0000313|EMBL:EIL93791.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
scnpilot_solids1_trim150_scaffold_242_curated_15
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15232..15456
DNA (225bp) protein (75aa)
Uncharacterized protein n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VPX0_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL89261.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_242_curated_16
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15535..17799
DNA (2265bp) protein (755aa)
DNA helicase {ECO:0000256|SAAS:SAAS00145970}; EC=3.6.4.12 {ECO:0000256|SAAS:SAAS00145970};; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
DNA-dependent helicase II n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W2V2_9GAMM
DNA/RNA helicase, superfamily I
scnpilot_solids1_trim150_scaffold_242_curated_17
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

Not on your lists

comp(17904..19868)
DNA (1965bp) protein (655aa)
X-Pro dipeptidyl-peptidase domain-containing protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W7L1_9GAMM
X-Pro dipeptidyl-peptidase domain-containing protein
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
scnpilot_solids1_trim150_scaffold_242_curated_18
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20105..21955
DNA (1851bp) protein (617aa)
Aminopeptidase N n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VVM0_9GAMM
Aminopeptidase N {ECO:0000313|EMBL:EIL91261.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
aminopeptidase N
scnpilot_solids1_trim150_scaffold_242_curated_19
Dyella jiangningensis, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22066..25185)
DNA (3120bp) protein (1040aa)
Outer membrane receptor for ferrienterochelin and colicins n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WFK2_9GAMM
Oar protein {ECO:0000313|EMBL:AHX14832.1}; TaxID=1379159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella jiangningensis.;"
outer membrane receptor protein
scnpilot_solids1_trim150_scaffold_242_curated_20
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25490..26749)
DNA (1260bp) protein (420aa)
Putative enzyme of heme biosynthesis n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W2V3_9GAMM
Putative enzyme of heme biosynthesis {ECO:0000313|EMBL:EIL93794.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
putative enzyme of heme biosynthesis
scnpilot_solids1_trim150_scaffold_242_curated_21
RIFOXYA1_FULL_Xanthomonadales_69_10_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26746..27789)
DNA (1044bp) protein (348aa)
Putative enzyme of heme biosynthesis n=2 Tax=Rhodanobacter denitrificans RepID=M4NDJ5_9GAMM
putative enzyme of heme biosynthesis
Tax=RIFOXYA1_FULL_Xanthomonadales_69_10_curated
scnpilot_solids1_trim150_scaffold_242_curated_22
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28010..28780)
DNA (771bp) protein (257aa)
Uroporphyrinogen-III synthase n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W2V5_9GAMM
Uroporphyrinogen-III synthase {ECO:0000313|EMBL:EIL93796.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
uroporphyrinogen-III synthase
scnpilot_solids1_trim150_scaffold_242_curated_23
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28861..29373
DNA (513bp) protein (171aa)
Thioesterase domain-containing protein n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WHH8_9GAMM
Thioesterase domain-containing protein {ECO:0000313|EMBL:EIL98919.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
thioesterase-like protein
scnpilot_solids1_trim150_scaffold_242_curated_24
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29427..29840
DNA (414bp) protein (138aa)
Uncharacterized protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W2V7_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL93798.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_242_curated_25
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29958..30404
DNA (447bp) protein (149aa)
Rhodanese-related sulfurtransferase n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VPY1_9GAMM
Rhodanese-related sulfurtransferase {ECO:0000313|EMBL:EIL89272.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
Rhodanese-related sulfurtransferase
scnpilot_solids1_trim150_scaffold_242_curated_26
Dyella japonica, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30460..30900
DNA (441bp) protein (147aa)
esterase n=1 Tax=Dyella japonica RepID=UPI00031F9B22
Uncharacterized protein {ECO:0000313|EMBL:AIF45847.1}; TaxID=1217721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella japonica A8.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_242_curated_27
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30897..31844
DNA (948bp) protein (316aa)
Serine/threonine protein kinase n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WHI3_9GAMM
putative homoserine kinase type II (protein kinase fold)
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
scnpilot_solids1_trim150_scaffold_242_curated_28
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

31936..32370
DNA (435bp) protein (145aa)
Uncharacterized protein n=1 Tax=Rhodanobacter denitrificans RepID=I4WHU2_9GAMM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGG87493.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids1_trim150_scaffold_242_curated_29
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

32429..33601
DNA (1173bp) protein (391aa)
putative SAM-dependent methyltransferase (EC:2.1.1.-)
Putative SAM-dependent methyltransferase n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WHH0_9GAMM
Putative SAM-dependent methyltransferase {ECO:0000313|EMBL:EIL98911.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
scnpilot_solids1_trim150_scaffold_242_curated_30
Pseudomonas aeruginosa, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(33611..34888)
DNA (1278bp) protein (426aa)
Major facilitator transporter n=2 Tax=Pseudomonas putida RepID=L1M7A8_PSEPU
Uncharacterized protein {ECO:0000313|EMBL:ETU73471.1}; TaxID=1402581 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas aeruginosa PS42.;"
major facilitator superfamily protein
Displaying items 1-30 of 76 in total

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