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scnpilot_solids1_trim150_scaffold_74_curated_84

Organism: solids_Rhodanobacter_4

partial RP 24 / 55 MC: 2 BSCG 23 / 51 MC: 2 ASCG 9 / 38
Location: comp(105130..105420)

Top 3 Functional Annotations

Value Algorithm Source
DNA-directed RNA polymerase subunit omega (EC:2.7.7.6) similarity KEGG
DB: KEGG
  • Identity: 93.8
  • Coverage: 96.0
  • Bit_score: 177
  • Evalue 2.30e-42
DNA-directed RNA polymerase subunit omega {ECO:0000256|HAMAP-Rule:MF_00366, ECO:0000256|SAAS:SAAS00054253}; Short=RNAP omega subunit {ECO:0000256|HAMAP-Rule:MF_00366};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_00366, ECO:0000256|SAAS:SAAS00094401};; RNA polymerase omega subunit {ECO:0000256|HAMAP-Rule:MF_00366}; Transcriptase subunit omega {ECO:0000256|HAMAP-Rule:MF_00366}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanob similarity UNIPROT
DB: UniProtKB
  • Identity: 93.8
  • Coverage: 96.0
  • Bit_score: 177
  • Evalue 1.00e-41
DNA-directed RNA polymerase subunit omega n=3 Tax=Rhodanobacter RepID=I4WVX7_9GAMM similarity UNIREF
DB: UNIREF100
  • Identity: 93.8
  • Coverage: 96.0
  • Bit_score: 177
  • Evalue 7.30e-42

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Taxonomy

Rhodanobacter thiooxydans → Rhodanobacter → Xanthomonadales → Gammaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 291
ATGGCCCGTATCACCGTGGAAGACTGCCTTGAGGTTGTGGACAACCGCTTTGAGCTGGTGCTCATGGCCACCAAGCGGGCAAGGCAACTGGAGAAGGGCGTCGAACCGGCGGTCAATCCGGGGCACGACAAGCCCACGGTGGTGGCCTTGCGTGAGATTGCCGAGCGCCGCATCGACCAGGCCATGATCGACCAGATCGACAAGGCCGAGCGCGAGCGCGCGGAGCGCGAGGCGCTGGAATGGGCGGCCGCGGAAGTCGACGATGACTTGTCCAAGGTCGGTGACGACTGA
PROTEIN sequence
Length: 97
MARITVEDCLEVVDNRFELVLMATKRARQLEKGVEPAVNPGHDKPTVVALREIAERRIDQAMIDQIDKAERERAEREALEWAAAEVDDDLSKVGDD*