ggKbase home page

scnpilot_solids1_trim150_scaffold_74_curated

Search features with annotation key words

Displaying items 61-90 of 150 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids1_trim150_scaffold_74_curated_61
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

73844..74254
DNA (411bp) protein (137aa)
Large-conductance mechanosensitive channel n=1 Tax=Rhodanobacter sp. 115 RepID=I4VWW6_9GAMM
Large-conductance mechanosensitive channel {ECO:0000256|HAMAP-Rule:MF_00115, ECO:0000256|SAAS:SAAS00023935}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
large conductance mechanosensitive channel protein
scnpilot_solids1_trim150_scaffold_74_curated_62
Marinobacter hydrocarbonoclasticus, Marinobacter, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

74374..75954
DNA (1581bp) protein (527aa)
Putative ymdC hydrolase, of the phospholipase family n=1 Tax=Marinobacter hydrocarbonoclasticus ATCC 49840 RepID=H8W4J5_MARHY
phospholipase D/transphosphatidylase
Putative ymdC hydrolase, of the phospholipase family {ECO:0000313|EMBL:CCG96582.1}; TaxID=1163748 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Alteromonadaceae; Marinobacter.;" source="Marinobacter hydrocarbonoclasticus ATCC 49840.;"
scnpilot_solids1_trim150_scaffold_74_curated_63
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

76050..77492
DNA (1443bp) protein (481aa)
Aminopeptidase n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VS53_9GAMM
Aminopeptidase {ECO:0000313|EMBL:EIL90044.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
putative aminopeptidase
scnpilot_solids1_trim150_scaffold_74_curated_64
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(77665..80778)
DNA (3114bp) protein (1038aa)
Acriflavin resistance protein n=1 Tax=Rhodanobacter denitrificans RepID=I4WVV4_9GAMM
Cation/multidrug efflux pump {ECO:0000313|EMBL:AGG90394.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
cation/multidrug efflux pump
scnpilot_solids1_trim150_scaffold_74_curated_65
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(80783..81901)
DNA (1119bp) protein (373aa)
Secretion protein HlyD n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VS55_9GAMM
Secretion protein HlyD {ECO:0000313|EMBL:EIL90046.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
RND family efflux transporter, MFP subunit
scnpilot_solids1_trim150_scaffold_74_curated_66
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

82192..82725
DNA (534bp) protein (178aa)
RNase III inhibitor n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VS57_9GAMM
putative phosphatase, C-terminal domain of histone macro H2A1 like protein
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
scnpilot_solids1_trim150_scaffold_74_curated_67
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(82790..84511)
DNA (1722bp) protein (574aa)
Uncharacterized protein n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VS58_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL90049.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_74_curated_68
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(84508..86346)
DNA (1839bp) protein (613aa)
Membrane protein involved in colicin uptake n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WNF9_9GAMM
Membrane protein involved in colicin uptake {ECO:0000313|EMBL:EIM01001.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
tetratricopeptide repeat protein
scnpilot_solids1_trim150_scaffold_74_curated_69
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(86343..87329)
DNA (987bp) protein (329aa)
Mg-chelatase subunit ChlD n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WNG0_9GAMM
Mg-chelatase subunit ChlD {ECO:0000313|EMBL:EIM01002.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
Mg-chelatase subunit ChlD
scnpilot_solids1_trim150_scaffold_74_curated_70
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(87322..87852)
DNA (531bp) protein (177aa)
Uncharacterized protein n=1 Tax=Rhodanobacter denitrificans RepID=M4NS83_9GAMM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGG90401.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids1_trim150_scaffold_74_curated_71
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(87849..88766)
DNA (918bp) protein (306aa)
Uncharacterized protein n=1 Tax=Rhodanobacter denitrificans RepID=M4NJY6_9GAMM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGG90402.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids1_trim150_scaffold_74_curated_72
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(88787..89782)
DNA (996bp) protein (332aa)
MoxR-like ATPase n=1 Tax=Rhodanobacter denitrificans RepID=M4NL56_9GAMM
MoxR-like ATPase
MoxR-like ATPase {ECO:0000313|EMBL:AGG90403.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids1_trim150_scaffold_74_curated_73
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(89989..92283)
DNA (2295bp) protein (765aa)
Type IV pilus secretin PilQ/competence protein n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VS64_9GAMM
Type IV pilus secretin PilQ/competence protein {ECO:0000313|EMBL:EIL90055.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
type IV pilus secretin PilQ/competence protein
scnpilot_solids1_trim150_scaffold_74_curated_74
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(92305..92850)
DNA (546bp) protein (182aa)
Tfp pilus assembly protein PilP n=1 Tax=Rhodanobacter denitrificans RepID=M4NHH9_9GAMM
Tfp pilus assembly protein PilP
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
scnpilot_solids1_trim150_scaffold_74_curated_75
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(92847..93503)
DNA (657bp) protein (219aa)
Fimbrial assembly membrane protein n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VS66_9GAMM
Fimbrial assembly membrane protein {ECO:0000313|EMBL:EIL90057.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
Tfp pilus assembly protein PilO
scnpilot_solids1_trim150_scaffold_74_curated_76
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(93500..94189)
DNA (690bp) protein (230aa)
Fimbrial assembly membrane protein n=1 Tax=Rhodanobacter denitrificans RepID=I4WVW7_9GAMM
Tfp pilus assembly protein PilN
Tfp pilus assembly protein PilN {ECO:0000313|EMBL:AGG90407.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids1_trim150_scaffold_74_curated_77
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(94189..95247)
DNA (1059bp) protein (353aa)
Fimbrial assembly membrane protein n=1 Tax=Rhodanobacter denitrificans RepID=I4WVW8_9GAMM
type IV pilus assembly protein PilM
Type IV pilus assembly protein PilM {ECO:0000313|EMBL:AGG90408.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids1_trim150_scaffold_74_curated_78
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

95472..97991
DNA (2520bp) protein (840aa)
Penicillin-binding protein, 1A family n=1 Tax=Rhodanobacter denitrificans RepID=M4NHN1_9GAMM
Penicillin-binding protein, 1A family {ECO:0000313|EMBL:AGG90409.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
penicillin-binding protein, 1A family
scnpilot_solids1_trim150_scaffold_74_curated_79
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(98140..99435)
DNA (1296bp) protein (432aa)
citrate synthase I, hexameric type (EC:2.3.3.1)
Citrate synthase n=1 Tax=Rhodanobacter denitrificans RepID=I4WVX1_9GAMM
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
scnpilot_solids1_trim150_scaffold_74_curated_80
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(99647..99916)
DNA (270bp) protein (90aa)
50S ribosomal protein L31 type B n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W2A7_9GAMM
50S ribosomal protein L31 type B {ECO:0000256|HAMAP-Rule:MF_00502, ECO:0000256|SAAS:SAAS00004504}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
ribosomal protein L31
scnpilot_solids1_trim150_scaffold_74_curated_81
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(100034..102133)
DNA (2100bp) protein (700aa)
ATP-dependent DNA helicase RecG (EC:3.6.1.-)
ATP-dependent DNA helicase RecG n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W2A9_9GAMM
ATP-dependent DNA helicase RecG {ECO:0000313|EMBL:EIL93600.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
scnpilot_solids1_trim150_scaffold_74_curated_82
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(102225..102608)
DNA (384bp) protein (128aa)
Endoribonuclease L-PSP n=1 Tax=Rhodanobacter denitrificans RepID=I4WVX5_9GAMM
endoribonuclease L-PSP
Endoribonuclease L-PSP {ECO:0000313|EMBL:AGG90415.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids1_trim150_scaffold_74_curated_83
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(102783..104948)
DNA (2166bp) protein (722aa)
RelA/SpoT family (P)ppGpp synthetase n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WNH6_9GAMM
RelA/SpoT family (P)ppGpp synthetase {ECO:0000313|EMBL:EIM01018.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
(p)ppGpp synthetase, RelA/SpoT family
scnpilot_solids1_trim150_scaffold_74_curated_84
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(105130..105420)
DNA (291bp) protein (97aa)
DNA-directed RNA polymerase subunit omega (EC:2.7.7.6)
DNA-directed RNA polymerase subunit omega {ECO:0000256|HAMAP-Rule:MF_00366, ECO:0000256|SAAS:SAAS00054253}; Short=RNAP omega subunit {ECO:0000256|HAMAP-Rule:MF_00366};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_00366, ECO:0000256|SAAS:SAAS00094401};; RNA polymerase omega subunit {ECO:0000256|HAMAP-Rule:MF_00366}; Transcriptase subunit omega {ECO:0000256|HAMAP-Rule:MF_00366}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanob
DNA-directed RNA polymerase subunit omega n=3 Tax=Rhodanobacter RepID=I4WVX7_9GAMM
scnpilot_solids1_trim150_scaffold_74_curated_85
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

105607..106452
DNA (846bp) protein (282aa)
Surface lipoprotein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W2B3_9GAMM
Surface lipoprotein {ECO:0000313|EMBL:EIL93604.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
surface lipoprotein
scnpilot_solids1_trim150_scaffold_74_curated_86

Not on your lists

106763..107878
DNA (1116bp) protein (372aa)
Secretion protein HlyD n=1 Tax=mine drainage metagenome RepID=T1BJT8_9ZZZZ
Secretion protein HlyD {ECO:0000313|EMBL:EQD53519.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
mdtA; multidrug efflux transporter; K07799 putative multidrug efflux transporter MdtA
scnpilot_solids1_trim150_scaffold_74_curated_87

Not on your lists

107875..111030
DNA (3156bp) protein (1052aa)
Multidrug resistance protein MdtC n=4 Tax=mine drainage metagenome RepID=T1BHB2_9ZZZZ
Multidrug resistance protein MdtC {ECO:0000313|EMBL:EQD53520.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
acriflavin resistance protein; K03296 hydrophobic/amphiphilic exporter-1 (mainly G- bacteria), HAE1 family
scnpilot_solids1_trim150_scaffold_74_curated_88
Lysobacter dokdonensis, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(111166..112566)
DNA (1401bp) protein (467aa)
Putative amino acid decarboxylase, Pyridoxal-dependent protein n=1 Tax=marine actinobacterium PHSC20C1 RepID=A4AG77_9ACTN
Amino acid decarboxylase {ECO:0000313|EMBL:KGQ20508.1}; TaxID=1300345 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter dokdonensis DS-58.;"
pyridoxal-dependent decarboxylase
scnpilot_solids1_trim150_scaffold_74_curated_89

Not on your lists

112749..114299
DNA (1551bp) protein (517aa)
hypothetical protein n=1 Tax=Sphingomonas sp. PR090111-T3T-6A RepID=UPI0003722D89
Peptidase family M28 {ECO:0000313|EMBL:AGU10830.1}; Flags: Fragment;; TaxID=155900 species="unclassified sequences; environmental samples.;" source="uncultured organism.;"
peptidase M28
scnpilot_solids1_trim150_scaffold_74_curated_90
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(114319..115215)
DNA (897bp) protein (299aa)
LysR family transcriptional regulator n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W3K8_9GAMM
LysR family transcriptional regulator {ECO:0000313|EMBL:EIL94049.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
transcriptional regulator
Displaying items 61-90 of 150 in total

View Taxonomy