ggKbase home page

scnpilot_solids1_trim150_scaffold_202_curated

Search features with annotation key words

Displaying items 1-30 of 89 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids1_trim150_scaffold_202_curated_1
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1..585)
DNA (585bp) protein (195aa)
NAD(P) transhydrogenase subunit beta {ECO:0000256|PIRNR:PIRNR000204}; EC=1.6.1.2 {ECO:0000256|PIRNR:PIRNR000204};; Nicotinamide nucleotide transhydrogenase subunit beta {ECO:0000256|PIRNR:PIRNR000204}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
NAD(P) transhydrogenase subunit beta n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VUY5_9GAMM
NAD/NADP transhydrogenase beta subunit
scnpilot_solids1_trim150_scaffold_202_curated_2
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(585..890)
DNA (306bp) protein (102aa)
Pyruvate kinase n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VUY6_9GAMM
Pyruvate kinase {ECO:0000313|EMBL:EIL91027.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_202_curated_3
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1029..1613
DNA (585bp) protein (195aa)
RNA polymerase factor sigma-70 {ECO:0000313|EMBL:EIL91028.1}; EC=2.7.7.6 {ECO:0000313|EMBL:EIL91028.1};; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
RNA polymerase factor sigma-70 n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VUY7_9GAMM
RNA polymerase sigma factor, sigma-70 family
scnpilot_solids1_trim150_scaffold_202_curated_4
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1610..2020
DNA (411bp) protein (137aa)
Uncharacterized protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VUY8_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL91029.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_202_curated_5
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2024..2596
DNA (573bp) protein (191aa)
Uncharacterized protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VUY9_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL91030.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
Protein of unknown function (DUF3106)
scnpilot_solids1_trim150_scaffold_202_curated_6
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2604..3704)
DNA (1101bp) protein (367aa)
NAD(P) transhydrogenase subunit Alpha protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VUZ0_9GAMM
NAD(P) transhydrogenase subunit Alpha protein {ECO:0000313|EMBL:EIL91031.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
NAD/NADP transhydrogenase alpha subunit
scnpilot_solids1_trim150_scaffold_202_curated_7
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3838..4269
DNA (432bp) protein (144aa)
cytidine deaminase (EC:3.5.4.5)
Cytidine deaminase n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VUZ1_9GAMM
Cytidine deaminase {ECO:0000313|EMBL:EIL91032.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
scnpilot_solids1_trim150_scaffold_202_curated_8
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4293..4862
DNA (570bp) protein (190aa)
Nitroreductase n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VUZ2_9GAMM
Nitroreductase {ECO:0000313|EMBL:EIL91033.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
nitroreductase
scnpilot_solids1_trim150_scaffold_202_curated_9
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4916..5764
DNA (849bp) protein (283aa)
5'-3' exonuclease n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VUZ3_9GAMM
5'-3' exonuclease {ECO:0000313|EMBL:EIL91034.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
5'-3' exonuclease (including N-terminal domain of PolI)
scnpilot_solids1_trim150_scaffold_202_curated_10
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6013..8145)
DNA (2133bp) protein (711aa)
Dipeptidyl aminopeptidase/acylaminoacyl peptidase n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VUZ4_9GAMM
Dipeptidyl aminopeptidase/acylaminoacyl peptidase {ECO:0000313|EMBL:EIL91035.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
dipeptidyl aminopeptidase/acylaminoacyl peptidase
scnpilot_solids1_trim150_scaffold_202_curated_11
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8328..8753
DNA (426bp) protein (142aa)
Fimbrial protein pilin: general secretion pathway protein H n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VUZ8_9GAMM
Fimbrial protein pilin: general secretion pathway protein H {ECO:0000313|EMBL:EIL91039.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
pilA; Tfp pilus assembly protein major pilin
scnpilot_solids1_trim150_scaffold_202_curated_12
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9168..9584
DNA (417bp) protein (139aa)
Fimbrial protein pilin n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VUZ9_9GAMM
Fimbrial protein pilin {ECO:0000313|EMBL:EIL91040.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
fimbrial protein pilin; K02650 type IV pilus assembly protein PilA
scnpilot_solids1_trim150_scaffold_202_curated_13
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9913..11655
DNA (1743bp) protein (581aa)
Uncharacterized protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VV00_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL91041.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_202_curated_14
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11981..14191
DNA (2211bp) protein (737aa)
Uncharacterized protein n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VLY5_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL88226.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_202_curated_15
Oleiagrimonas soli, Oleiagrimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14420..15712
DNA (1293bp) protein (431aa)
hypothetical protein n=1 Tax=Dyella ginsengisoli RepID=UPI00034865C5
dTDP-4-dehydro-6-deoxyglucose aminotransferase {ECO:0000313|EMBL:KGI77245.1}; TaxID=1543381 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Oleiagrimonas.;" source="Oleiagrimonas soli.;"
Aminotransferase
scnpilot_solids1_trim150_scaffold_202_curated_16
Parabacteroides sp. D13, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

15709..15939
DNA (231bp) protein (77aa)
hypothetical protein n=1 Tax=Dyella ginsengisoli RepID=UPI000346C8A7
Uncharacterized protein {ECO:0000313|EMBL:EEU49532.1}; TaxID=563193 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides sp. D13.;"
acyl carrier protein-like protein
scnpilot_solids1_trim150_scaffold_202_curated_17
Methylovorus glucosotrophus, Methylovorus, Methylophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15936..16994
DNA (1059bp) protein (353aa)
beta-ketoacyl-acyl-carrier-protein synthase III (EC:2.3.1.180); K00648 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180]
Beta-ketoacyl-acyl-carrier-protein synthase III {ECO:0000313|EMBL:ACT52024.1}; EC=2.3.1.180 {ECO:0000313|EMBL:ACT52024.1};; Flags: Precursor;; TaxID=582744 species="Bacteria; Proteobacteria; Betaproteobacteria; Methylophilales; Methylophilaceae; Methylovorus.;" source="Methylovorus glucosetrophus (strain SIP3-4).;"
hypothetical protein n=1 Tax=Dyella ginsengisoli RepID=UPI00034A1E6E
scnpilot_solids1_trim150_scaffold_202_curated_18
Flavobacterium sp. CF136, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

16984..18033
DNA (1050bp) protein (350aa)
hypothetical protein n=1 Tax=Dyella ginsengisoli RepID=UPI00034DF39F
Rieske (2Fe-2S) domain-containing protein {ECO:0000313|EMBL:EJL66739.1}; TaxID=1144313 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium sp. CF136.;"
Naphthalene 1,2-dioxygenase subunit alpha
scnpilot_solids1_trim150_scaffold_202_curated_19
Capnocytophaga sp. oral taxon 336, Capnocytophaga, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

18020..18754
DNA (735bp) protein (245aa)
hypothetical protein n=1 Tax=Dyella ginsengisoli RepID=UPI00035E8659
Uncharacterized protein {ECO:0000313|EMBL:EPE01266.1}; TaxID=1203603 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Capnocytophaga.;" source="Capnocytophaga sp. oral taxon 336 str. F0502.;"
3-oxoacyl-ACP reductase
scnpilot_solids1_trim150_scaffold_202_curated_20
Xanthomonas albilineans, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18751..19377
DNA (627bp) protein (209aa)
acetyltransferase (EC:2.3.-.-)
Putative acetyltransferase protein {ECO:0000313|EMBL:CBA15910.1}; EC=2.3.-.- {ECO:0000313|EMBL:CBA15910.1};; TaxID=380358 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas albilineans (strain GPE PC73 / CFBP 7063).;"
hypothetical protein n=1 Tax=Dyella ginsengisoli RepID=UPI0003452DA9
scnpilot_solids1_trim150_scaffold_202_curated_21
Tepidanaerobacter acetatoxydans, Tepidanaerobacter, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists

19377..20348
DNA (972bp) protein (324aa)
fabH; 3-oxoacyl-[acyl-carrier-protein] synthase 3 (EC:2.3.1.180)
3-oxoacyl-[acyl-carrier-protein] synthase 3 {ECO:0000313|EMBL:CCP26731.1}; EC=2.3.1.180 {ECO:0000313|EMBL:CCP26731.1};; TaxID=1209989 species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacteraceae; Tepidanaerobacter.;" source="Tepidanaerobacter acetatoxydans (strain DSM 21804 / JCM 16047 / Re1).;"
hypothetical protein n=1 Tax=Dyella ginsengisoli RepID=UPI00034938F4
scnpilot_solids1_trim150_scaffold_202_curated_22
Oleiagrimonas soli, Oleiagrimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20372..21826
DNA (1455bp) protein (485aa)
hypothetical protein n=1 Tax=Dyella ginsengisoli RepID=UPI0003704783
Uncharacterized protein {ECO:0000313|EMBL:KGI77249.1}; TaxID=1543381 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Oleiagrimonas.;" source="Oleiagrimonas soli.;"
polysaccharide biosynthesis protein
scnpilot_solids1_trim150_scaffold_202_curated_23
Azoarcus sp. KH32C, Azoarcus, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21852..22874
DNA (1023bp) protein (341aa)
hypothetical protein n=1 Tax=Dyella ginsengisoli RepID=UPI000373BBE9
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAL22706.1}; TaxID=748247 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Azoarcus.;" source="Azoarcus sp. KH32C.;"
scnpilot_solids1_trim150_scaffold_202_curated_24
Oleiagrimonas soli, Oleiagrimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22894..23664
DNA (771bp) protein (257aa)
Uncharacterized protein n=1 Tax=Azoarcus sp. KH32C RepID=H0Q2R2_9RHOO
Methyltransferase {ECO:0000313|EMBL:KGI77251.1}; TaxID=1543381 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Oleiagrimonas.;" source="Oleiagrimonas soli.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_202_curated_25
Azoarcus sp. KH32C, Azoarcus, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23687..24736)
DNA (1050bp) protein (350aa)
Glycosyl transferase family protein n=1 Tax=Rhodanobacter denitrificans RepID=I4WIY3_9GAMM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAL22708.1}; TaxID=748247 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Azoarcus.;" source="Azoarcus sp. KH32C.;"
scnpilot_solids1_trim150_scaffold_202_curated_26
Dyella jiangningensis, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24706..25632)
DNA (927bp) protein (309aa)
NAD-dependent epimerase/dehydratase n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VTY7_9GAMM
Epimerase {ECO:0000313|EMBL:AHX12276.1}; TaxID=1379159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella jiangningensis.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_202_curated_27
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25633..26526)
DNA (894bp) protein (298aa)
Group 1 glycosyl transferase n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VTY8_9GAMM
Group 1 glycosyl transferase {ECO:0000313|EMBL:EIL90679.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_202_curated_28
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26857..27711)
DNA (855bp) protein (285aa)
Glycosyl transferase family protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VV15_9GAMM
Glycosyl transferase family protein {ECO:0000313|EMBL:EIL91056.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
glycosyl transferase
scnpilot_solids1_trim150_scaffold_202_curated_29
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28020..29744
DNA (1725bp) protein (575aa)
Type IV-A pilus assembly ATPase PilB n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VV18_9GAMM
Type IV-A pilus assembly ATPase PilB {ECO:0000313|EMBL:EIL91059.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
type IV-A pilus assembly ATPase PilB
scnpilot_solids1_trim150_scaffold_202_curated_30
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29887..31158
DNA (1272bp) protein (424aa)
Type II secretory pathway, component PulF n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VV19_9GAMM
Type II secretory pathway, component PulF {ECO:0000313|EMBL:EIL91060.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
type II secretory pathway, component PulF
Displaying items 1-30 of 89 in total

View Taxonomy