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scnpilot_solids1_trim150_scaffold_987_curated

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Displaying 20 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids1_trim150_scaffold_987_curated_1
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(1..1125)
DNA (1125bp) protein (375aa)
ATP-dependent RNA helicase DeaD {ECO:0000256|HAMAP-Rule:MF_00964}; EC=3.6.4.13 {ECO:0000256|HAMAP-Rule:MF_00964};; Cold-shock DEAD box protein A {ECO:0000256|HAMAP-Rule:MF_00964}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
DNA/RNA helicase, superfamily II (EC:5.99.1.-)
ATP-dependent RNA helicase DeaD n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W5Q2_9GAMM
scnpilot_solids1_trim150_scaffold_987_curated_2
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1276..2118
DNA (843bp) protein (281aa)
S-formylglutathione hydrolase n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W5Q3_9GAMM
S-formylglutathione hydrolase {ECO:0000313|EMBL:EIL94794.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
S-formylglutathione hydrolase
scnpilot_solids1_trim150_scaffold_987_curated_3
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2145..3473)
DNA (1329bp) protein (443aa)
ATP-dependent RNA helicase n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W5Q4_9GAMM
ATP-dependent RNA helicase {ECO:0000313|EMBL:EIL94795.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
DNA/RNA helicase, superfamily II
scnpilot_solids1_trim150_scaffold_987_curated_4
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3636..4295)
DNA (660bp) protein (220aa)
Type 11 methyltransferase n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W5Q5_9GAMM
Type 11 methyltransferase {ECO:0000313|EMBL:EIL94796.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase
scnpilot_solids1_trim150_scaffold_987_curated_5
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4439..5716
DNA (1278bp) protein (426aa)
Arabinose efflux permease family protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W5Q6_9GAMM
Arabinose efflux permease family protein {ECO:0000313|EMBL:EIL94797.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
arabinose efflux permease family protein
scnpilot_solids1_trim150_scaffold_987_curated_6
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5737..6222
DNA (486bp) protein (162aa)
Peptidyl-prolyl cis-trans isomerase {ECO:0000256|RuleBase:RU003915, ECO:0000256|RuleBase:RU004231}; EC=5.2.1.8 {ECO:0000256|RuleBase:RU003915};; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
Peptidyl-prolyl cis-trans isomerase n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W5Q7_9GAMM
FKBP-type peptidyl-prolyl cis-trans isomerase
scnpilot_solids1_trim150_scaffold_987_curated_7
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6348..6845)
DNA (498bp) protein (166aa)
Cell wall-associated hydrolase n=1 Tax=Rhodanobacter denitrificans RepID=I4WTI8_9GAMM
cell wall-associated hydrolase, invasion-associated protein
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
scnpilot_solids1_trim150_scaffold_987_curated_8
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6989..8110)
DNA (1122bp) protein (374aa)
TonB family protein n=1 Tax=Rhodanobacter denitrificans RepID=M4NFD1_9GAMM
TonB family protein
TonB family protein {ECO:0000313|EMBL:AGG88318.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids1_trim150_scaffold_987_curated_9
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8240..8626)
DNA (387bp) protein (129aa)
Putative transcriptional regulator n=1 Tax=Rhodanobacter denitrificans RepID=M4NCF5_9GAMM
putative transcriptional regulator
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
scnpilot_solids1_trim150_scaffold_987_curated_10
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8733..10079)
DNA (1347bp) protein (449aa)
Uncharacterized protein n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WQA2_9GAMM
hypothetical protein
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
scnpilot_solids1_trim150_scaffold_987_curated_11
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10104..11021
DNA (918bp) protein (306aa)
N-formylglutamate amidohydrolase n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W5R1_9GAMM
N-formylglutamate amidohydrolase {ECO:0000313|EMBL:EIL94802.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
N-formylglutamate amidohydrolase
scnpilot_solids1_trim150_scaffold_987_curated_12
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11058..11489)
DNA (432bp) protein (144aa)
Endoribonuclease L-PSP n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W5R2_9GAMM
Endoribonuclease L-PSP {ECO:0000313|EMBL:EIL94803.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
putative translation initiation inhibitor, yjgF family
scnpilot_solids1_trim150_scaffold_987_curated_13
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11486..12151)
DNA (666bp) protein (222aa)
Carbonic anhydrase {ECO:0000256|RuleBase:RU003956}; EC=4.2.1.1 {ECO:0000256|RuleBase:RU003956};; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
Carbonic anhydrase n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W5R3_9GAMM
carbonic anhydrase
scnpilot_solids1_trim150_scaffold_987_curated_14
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12148..13668)
DNA (1521bp) protein (507aa)
2-aminomuconic semialdehyde dehydrogenase n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W5R4_9GAMM
2-aminomuconic semialdehyde dehydrogenase {ECO:0000313|EMBL:EIL94805.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
NAD-dependent aldehyde dehydrogenase
scnpilot_solids1_trim150_scaffold_987_curated_15
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13747..14538)
DNA (792bp) protein (264aa)
Dehydrogenase n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W5R5_9GAMM
Dehydrogenase {ECO:0000313|EMBL:EIL94806.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
dehydrogenase of unknown specificity, short-chain alcohol dehydrogenase like protein
scnpilot_solids1_trim150_scaffold_987_curated_16
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14555..14869)
DNA (315bp) protein (105aa)
Uncharacterized protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W5R6_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL94807.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_987_curated_17
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14866..15690)
DNA (825bp) protein (275aa)
Uncharacterized protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W5R7_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL94808.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
Maltose operon periplasmic protein precursor (MalM)
scnpilot_solids1_trim150_scaffold_987_curated_18
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15704..17104)
DNA (1401bp) protein (467aa)
Asparagine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00534, ECO:0000256|SAAS:SAAS00089453}; EC=6.1.1.22 {ECO:0000256|HAMAP-Rule:MF_00534, ECO:0000256|SAAS:SAAS00089453};; Asparaginyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00534}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
asparaginyl-tRNA synthetase (EC:6.1.1.22)
Asparagine--tRNA ligase n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W5R8_9GAMM
scnpilot_solids1_trim150_scaffold_987_curated_19
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17255..17581
DNA (327bp) protein (109aa)
Iron-sulfur cluster assembly accessory protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W5R9_9GAMM
Iron-sulfur cluster assembly accessory protein {ECO:0000313|EMBL:EIL94810.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
Iron-sulfur cluster assembly accessory protein
scnpilot_solids1_trim150_scaffold_987_curated_20
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


17791..17907
DNA (117bp) protein (39aa)
30S ribosomal protein S6 n=1 Tax=Rhodanobacter denitrificans RepID=I4WTK2_9GAMM
SSU ribosomal protein S6P
30S ribosomal protein S6 {ECO:0000256|HAMAP-Rule:MF_00360}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
Displaying 20 items

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