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scnpilot_solids1_trim150_scaffold_252_curated_35

Organism: solids_Rhodanobacter_5

partial RP 37 / 55 MC: 2 BSCG 37 / 51 MC: 2 ASCG 10 / 38
Location: comp(35634..36209)

Top 3 Functional Annotations

Value Algorithm Source
ECF subfamily RNA polymerase sigma-24 subunit n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W218_9GAMM similarity UNIREF
DB: UNIREF100
  • Identity: 99.0
  • Coverage: 191.0
  • Bit_score: 381
  • Evalue 5.10e-103
ECF subfamily RNA polymerase sigma-24 subunit {ECO:0000313|EMBL:EIL93509.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 99.0
  • Coverage: 191.0
  • Bit_score: 381
  • Evalue 7.10e-103
RNA polymerase sigma factor, sigma-70 family similarity KEGG
DB: KEGG
  • Identity: 87.5
  • Coverage: 192.0
  • Bit_score: 341
  • Evalue 1.40e-91

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Taxonomy

Rhodanobacter spathiphylli → Rhodanobacter → Xanthomonadales → Gammaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 576
ATGGAAGACATCCGCCAAGCCGATCGAGCCCTGGTCGACGCCGTGCTGGCCAACCGGCCAGGCGCGTTCGAACGCCTCGTGCGCGAGTACCAGGGGCTGTGCTGGCACATCATCCAGCGCATGGTGCGGCATCCGGAGGACGCCCGCGAGCTGTGCCAGGACACCTTCCTGCGCGTGCACCAGTGCCTGCATCAGTACCGTTACGAAAGCGCGCTGAAATCATGGATTGGCCGGATCGCCTTCACCATCGCGCTGCGCCACCTGCAACACAAGCGCATCGCCCTGGTCGAGCCCGGCGGCGACGACGGCGAGTCGCTGGTGGACAGCATCGGGGACGGTTTCGACCTGGAGGCCGCCTGCGCCGACGAGGAAACCGCACGGCACCTGCATGAGGCGATCGAGGCGCTGCCACCCTTGCAACGCACCTTGCTGACCCTGTATTACCTCGAAGAGACGTCCATACCCGAGATCGCCCGCATCACCGGCATGGCCGCGGGCACGATCAAGAGCCATCTGTTCCGCTCGCGCCTGCGCCTGCGCGACGCGCTCGAAACACGGACAGGAGTTGCCGCATGA
PROTEIN sequence
Length: 192
MEDIRQADRALVDAVLANRPGAFERLVREYQGLCWHIIQRMVRHPEDARELCQDTFLRVHQCLHQYRYESALKSWIGRIAFTIALRHLQHKRIALVEPGGDDGESLVDSIGDGFDLEAACADEETARHLHEAIEALPPLQRTLLTLYYLEETSIPEIARITGMAAGTIKSHLFRSRLRLRDALETRTGVAA*