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scnpilot_solids1_trim150_scaffold_1481_curated

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Displaying 15 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids1_trim150_scaffold_1481_curated_1
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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3..761
-----------------
DNA (759bp)
protein (253aa)
Phosphomethylpyrimidine synthase {ECO:0000256|HAMAP-Rule:MF_00089, ECO:0000256|SAAS:SAAS00007814}; EC=4.1.99.17 {ECO:0000256|HAMAP-Rule:MF_00089, ECO:0000256|SAAS:SAAS00007809};; Hydroxymethylpyrimidine phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00089}; Thiamine biosynthesis protein ThiC {ECO:0000256|HAMAP-Rule:MF_00089}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
Phosphomethylpyrimidine synthase n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VZU1_9GAMM
thiC; Thiamine biosynthesis protein thiC; K03147 thiamine biosynthesis protein ThiC
scnpilot_solids1_trim150_scaffold_1481_curated_2
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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767..1726
-----------------
DNA (960bp)
protein (320aa)
thiO; glycine oxidase ThiO; K03153 glycine oxidase [EC:1.4.3.19]
Glycine oxidase ThiO n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VZU2_9GAMM
Glycine oxidase ThiO {ECO:0000313|EMBL:EIL92733.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
scnpilot_solids1_trim150_scaffold_1481_curated_3
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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1739..1936
-----------------
DNA (198bp)
protein (66aa)
Thiamine biosynthesis protein ThiS n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VZU3_9GAMM
Thiamine biosynthesis protein ThiS {ECO:0000313|EMBL:EIL92734.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
thiamine biosynthesis protein ThiS; K03154 sulfur carrier protein
scnpilot_solids1_trim150_scaffold_1481_curated_4
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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1940..2710
-----------------
DNA (771bp)
protein (257aa)
Thiazole synthase {ECO:0000256|HAMAP-Rule:MF_00443}; EC=2.8.1.10 {ECO:0000256|HAMAP-Rule:MF_00443};; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
Thiazole synthase n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VZU4_9GAMM
thiazole biosynthesis family protein; K03149 thiamine biosynthesis ThiG
scnpilot_solids1_trim150_scaffold_1481_curated_5
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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2707..3315
-----------------
DNA (609bp)
protein (203aa)
Thiamine-phosphate synthase {ECO:0000256|RuleBase:RU003826}; EC=2.5.1.3 {ECO:0000256|RuleBase:RU003826};; Thiamine-phosphate pyrophosphorylase {ECO:0000256|RuleBase:RU003826}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
thiE; thiamine-phosphate pyrophosphorylase; K00788 thiamine-phosphate pyrophosphorylase [EC:2.5.1.3]
Thiamine-phosphate synthase n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VZU5_9GAMM
scnpilot_solids1_trim150_scaffold_1481_curated_6
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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3312..4298
-----------------
DNA (987bp)
protein (329aa)
Thiamine biosynthesis protein ThiF n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VZU6_9GAMM
Thiamine biosynthesis protein ThiF {ECO:0000313|EMBL:EIL92737.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
UBA/THIF-type NAD/FAD binding protein
scnpilot_solids1_trim150_scaffold_1481_curated_7
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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4310..5116
-----------------
DNA (807bp)
protein (269aa)
thiD; phosphomethylpyrimidine kinase (EC:2.7.4.7); K00941 hydroxymethylpyrimidine/phosphomethylpyrimidine kinase [EC:2.7.1.49 2.7.4.7]
Bifunctional hydroxy-methylpyrimidine kinase/ hydroxy-phosphomethylpyrimidine kinase n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VZU7_9GAMM
Bifunctional hydroxy-methylpyrimidine kinase/ hydroxy-phosphomethylpyrimidine kinase {ECO:0000313|EMBL:EIL92738.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
scnpilot_solids1_trim150_scaffold_1481_curated_8
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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5187..5861
-----------------
DNA (675bp)
protein (225aa)
PKHD-type hydroxylase R2APBS1_0749 {ECO:0000256|HAMAP-Rule:MF_00657}; EC=1.14.11.- {ECO:0000256|HAMAP-Rule:MF_00657};; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
PKHD-type hydroxylase UUC_00845 n=1 Tax=Rhodanobacter denitrificans RepID=I4WZE0_9GAMM
putative iron-regulated protein
scnpilot_solids1_trim150_scaffold_1481_curated_9
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(5866..6588)
-----------------
DNA (723bp)
protein (241aa)
Uracil-DNA glycosylase {ECO:0000256|HAMAP-Rule:MF_00148, ECO:0000256|RuleBase:RU003780}; Short=UDG {ECO:0000256|HAMAP-Rule:MF_00148};; EC=3.2.2.27 {ECO:0000256|HAMAP-Rule:MF_00148, ECO:0000256|RuleBase:RU003780};; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
Uracil-DNA glycosylase (EC:3.2.2.-)
Uracil-DNA glycosylase n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VZU8_9GAMM
scnpilot_solids1_trim150_scaffold_1481_curated_10
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(6585..7427)
-----------------
DNA (843bp)
protein (281aa)
Two-component system response regulator n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VZU9_9GAMM
Two-component system response regulator {ECO:0000313|EMBL:EIL92740.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
response regulator containing a CheY-like receiver domain and a GGDEF domain
scnpilot_solids1_trim150_scaffold_1481_curated_11
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(7548..8537)
-----------------
DNA (990bp)
protein (330aa)
Cell division protein FtsX n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VZV0_9GAMM
Cell division protein FtsX {ECO:0000256|PIRNR:PIRNR003097}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
cell division protein
scnpilot_solids1_trim150_scaffold_1481_curated_12
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(8534..9211)
-----------------
DNA (678bp)
protein (226aa)
Cell division ATP-binding protein FtsE n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VZV1_9GAMM
Cell division ATP-binding protein FtsE {ECO:0000313|EMBL:EIL92742.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
cell division ATP-binding protein FtsE
scnpilot_solids1_trim150_scaffold_1481_curated_13
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(9360..11105)
-----------------
DNA (1746bp)
protein (582aa)
ATP-dependent RNA helicase RhlB {ECO:0000256|HAMAP-Rule:MF_00661, ECO:0000256|SAAS:SAAS00011806}; EC=3.6.4.13 {ECO:0000256|HAMAP-Rule:MF_00661, ECO:0000256|SAAS:SAAS00011808};; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
ATP-dependent RNA helicase RhlB n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VZV2_9GAMM
DNA/RNA helicase, superfamily II
scnpilot_solids1_trim150_scaffold_1481_curated_14
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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11660..11986
-----------------
DNA (327bp)
protein (109aa)
Thioredoxin n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VZV3_9GAMM
Thioredoxin {ECO:0000256|PIRNR:PIRNR000077}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
thioredoxin
scnpilot_solids1_trim150_scaffold_1481_curated_15
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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12174..12761
-----------------
DNA (588bp)
protein (196aa)
Transcription termination factor Rho {ECO:0000256|HAMAP-Rule:MF_01884}; EC=3.6.4.- {ECO:0000256|HAMAP-Rule:MF_01884};; ATP-dependent helicase Rho {ECO:0000256|HAMAP-Rule:MF_01884}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
Transcription termination factor Rho n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VZV4_9GAMM
transcription termination factor Rho
Displaying 15 items

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