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scnpilot_solids1_trim150_scaffold_914_curated

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Displaying 22 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids1_trim150_scaffold_914_curated_1
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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2..2521
DNA (2520bp) protein (840aa)
phosphoribosylformylglycinamidine synthase (EC:6.3.5.3)
Phosphoribosylformylglycinamidine synthase {ECO:0000256|HAMAP-Rule:MF_00419, ECO:0000256|SAAS:SAAS00064474}; Short=FGAM synthase {ECO:0000256|HAMAP-Rule:MF_00419};; Short=FGAMS {ECO:0000256|HAMAP-Rule:MF_00419};; EC=6.3.5.3 {ECO:0000256|HAMAP-Rule:MF_00419, ECO:0000256|SAAS:SAAS00064474};; Formylglycinamide ribonucleotide amidotransferase {ECO:0000256|HAMAP-Rule:MF_00419}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodano
Phosphoribosylformylglycinamidine synthase n=1 Tax=Rhodanobacter denitrificans RepID=M4NEH2_9GAMM
scnpilot_solids1_trim150_scaffold_914_curated_2
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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2551..3291
DNA (741bp) protein (247aa)
Uncharacterized protein n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WJB7_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL99558.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_914_curated_3
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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3332..4261
DNA (930bp) protein (310aa)
Putative glycosyltransferase n=1 Tax=Rhodanobacter denitrificans RepID=I4WZD6_9GAMM
putative glycosyltransferase
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
scnpilot_solids1_trim150_scaffold_914_curated_4
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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4350..5243
DNA (894bp) protein (298aa)
Putative permease, DMT superfamily protein n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WJB5_9GAMM
Putative permease, DMT superfamily protein {ECO:0000313|EMBL:EIL99556.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
putative permease, DMT superfamily
scnpilot_solids1_trim150_scaffold_914_curated_5
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5231..5749)
DNA (519bp) protein (173aa)
Uncharacterized protein n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WJB4_9GAMM
hypothetical protein
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
scnpilot_solids1_trim150_scaffold_914_curated_6
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5907..6101)
DNA (195bp) protein (65aa)
Uncharacterized protein n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WJB2_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL99553.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
uncharacterized small protein
scnpilot_solids1_trim150_scaffold_914_curated_7
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6111..8186)
DNA (2076bp) protein (692aa)
Carbon starvation protein n=1 Tax=Rhodanobacter denitrificans RepID=I4WZC7_9GAMM
carbon starvation protein, predicted membrane protein
Carbon starvation protein, predicted membrane protein {ECO:0000313|EMBL:AGG87928.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids1_trim150_scaffold_914_curated_8
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8359..9162
DNA (804bp) protein (268aa)
Uncharacterized protein n=1 Tax=Rhodanobacter denitrificans RepID=M4NBE9_9GAMM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGG87929.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids1_trim150_scaffold_914_curated_9
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9234..9773
DNA (540bp) protein (180aa)
Peptide deformylase {ECO:0000256|HAMAP-Rule:MF_00163, ECO:0000256|RuleBase:RU003335}; Short=PDF {ECO:0000256|HAMAP-Rule:MF_00163};; EC=3.5.1.88 {ECO:0000256|HAMAP-Rule:MF_00163, ECO:0000256|SAAS:SAAS00013131};; Polypeptide deformylase {ECO:0000256|HAMAP-Rule:MF_00163}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
Peptide deformylase n=1 Tax=Rhodanobacter denitrificans RepID=I4WZC5_9GAMM
peptide deformylase
scnpilot_solids1_trim150_scaffold_914_curated_10
Polaromonas sp. CF318, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9835..10668)
DNA (834bp) protein (278aa)
Phenazine biosynthesis protein PhzF family n=1 Tax=Polaromonas sp. CF318 RepID=J3CYM1_9BURK
Phenazine biosynthesis protein PhzF family {ECO:0000313|EMBL:EJL80926.1}; TaxID=1144318 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas sp. CF318.;"
phenazine biosynthesis family protein
scnpilot_solids1_trim150_scaffold_914_curated_11
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11179..12153)
DNA (975bp) protein (325aa)
Transcriptional activator FtrA n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VJ88_9GAMM
transcriptional regulator; K13633 AraC family transcriptional regulator, transcriptional activator FtrA
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
scnpilot_solids1_trim150_scaffold_914_curated_12
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12241..12648
DNA (408bp) protein (136aa)
Rhodanese n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VJ89_9GAMM
rhodanese
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
scnpilot_solids1_trim150_scaffold_914_curated_13
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12641..13111
DNA (471bp) protein (157aa)
N-acetyltransferase GCN5 n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VJ90_9GAMM
GCN5-like N-acetyltransferase
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
scnpilot_solids1_trim150_scaffold_914_curated_14
Dyella jiangningensis, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13299..14261)
DNA (963bp) protein (321aa)
Uncharacterized protein n=1 Tax=Sphingomonas sp. MM-1 RepID=M4S8Q0_9SPHN
Lytic murein transglycosylase {ECO:0000313|EMBL:AHX13497.1}; TaxID=1379159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella jiangningensis.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_914_curated_15
RIFOXYA1_FULL_Brevundimonas_67_7_curated, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14449..15684)
DNA (1236bp) protein (412aa)
MFS transporter n=1 Tax=Rhizobium loti RepID=UPI0003633335
major facilitator transporter
Tax=RIFOXYA1_FULL_Brevundimonas_67_7_curated
scnpilot_solids1_trim150_scaffold_914_curated_16
RIFOXYA1_FULL_Brevundimonas_67_7_curated, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15681..16157)
DNA (477bp) protein (159aa)
Uncharacterized protein n=1 Tax=Desulfovibrio sp. X2 RepID=S7TLV0_9DELT
hypothetical protein
Tax=RIFOXYA1_FULL_Brevundimonas_67_7_curated
scnpilot_solids1_trim150_scaffold_914_curated_17
Starkeya novella, Starkeya, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16268..17164
DNA (897bp) protein (299aa)
Transcriptional regulator, LysR family n=1 Tax=Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 / NBRC 12443 / NCIB 9113) RepID=D6ZYD9_STAND
LysR family transcriptional regulator
Transcriptional regulator, LysR family {ECO:0000313|EMBL:ADH89051.1}; TaxID=639283 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Starkeya.;" source="Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 /; NBRC 12443 / NCIB 9113).;"
scnpilot_solids1_trim150_scaffold_914_curated_18
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17219..18412
DNA (1194bp) protein (398aa)
Lipopolysaccharide modification acyltransferase n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VSJ1_9GAMM
putative acyltransferase
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
scnpilot_solids1_trim150_scaffold_914_curated_19
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18461..19192)
DNA (732bp) protein (244aa)
Uncharacterized protein n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VJ91_9GAMM
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
scnpilot_solids1_trim150_scaffold_914_curated_20
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19373..19630
DNA (258bp) protein (86aa)
Uncharacterized protein n=2 Tax=Rhodanobacter denitrificans RepID=M4NDH5_9GAMM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGG87932.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids1_trim150_scaffold_914_curated_21
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19655..20473)
DNA (819bp) protein (273aa)
Orotidine 5'-phosphate decarboxylase {ECO:0000256|HAMAP-Rule:MF_01215, ECO:0000256|SAAS:SAAS00032256}; EC=4.1.1.23 {ECO:0000256|HAMAP-Rule:MF_01215, ECO:0000256|SAAS:SAAS00032220};; OMP decarboxylase {ECO:0000256|HAMAP-Rule:MF_01215}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
Orotidine 5'-phosphate decarboxylase n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VSI7_9GAMM
orotidine 5''-phosphate decarboxylase, subfamily 2
scnpilot_solids1_trim150_scaffold_914_curated_22
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20609..21040)
DNA (432bp) protein (144aa)
Putative ABC transporter ATP-binding protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VSI6_9GAMM
Putative ABC transporter ATP-binding protein {ECO:0000313|EMBL:EIL90177.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
ATP-binding cassette protein, ChvD family
Displaying 22 items

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