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scnpilot_solids1_trim150_scaffold_1315_curated

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Displaying 28 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids1_trim150_scaffold_1315_curated_1
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3..2249)
DNA (2247bp) protein (749aa)
Uncharacterized protein n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WER2_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL97953.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
Rhs family protein
scnpilot_solids1_trim150_scaffold_1315_curated_2
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2414..3250)
DNA (837bp) protein (279aa)
Rhs family protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W2E9_9GAMM
Rhs family protein {ECO:0000313|EMBL:EIL93640.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
Rhs family protein
scnpilot_solids1_trim150_scaffold_1315_curated_3
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3460..6630)
DNA (3171bp) protein (1057aa)
Cation/multidrug efflux pump n=1 Tax=Rhodanobacter denitrificans RepID=M4ND09_9GAMM
cation/multidrug efflux pump
Cation/multidrug efflux pump {ECO:0000313|EMBL:AGG87323.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids1_trim150_scaffold_1315_curated_4
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6860..10036)
DNA (3177bp) protein (1059aa)
Cation/multidrug efflux pump n=1 Tax=Rhodanobacter denitrificans RepID=M4NC24_9GAMM
cation/multidrug efflux pump
Cation/multidrug efflux pump {ECO:0000313|EMBL:AGG87322.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids1_trim150_scaffold_1315_curated_5
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10197..12047)
DNA (1851bp) protein (617aa)
TonB-dependent vitamin B12 receptor n=1 Tax=Rhodanobacter denitrificans RepID=M4NHL6_9GAMM
TonB-dependent vitamin B12 receptor {ECO:0000313|EMBL:AGG87321.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
TonB-dependent vitamin B12 receptor
scnpilot_solids1_trim150_scaffold_1315_curated_6
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12520..13656)
DNA (1137bp) protein (379aa)
N-acetylglucosamine-6-phosphate deacetylase {ECO:0000256|PIRNR:PIRNR038994}; EC=3.5.1.25 {ECO:0000256|PIRNR:PIRNR038994};; GlcNAc 6-P deacetylase {ECO:0000256|PIRNR:PIRNR038994}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
N-acetylglucosamine-6-phosphate deacetylase n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WEQ8_9GAMM
N-acetylglucosamine-6-phosphate deacetylase
scnpilot_solids1_trim150_scaffold_1315_curated_7
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13785..14816)
DNA (1032bp) protein (344aa)
Glucosamine-fructose-6-phosphate aminotransferase n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WEQ7_9GAMM
Glucosamine-fructose-6-phosphate aminotransferase {ECO:0000313|EMBL:EIL97948.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
putative phosphosugar isomerase
scnpilot_solids1_trim150_scaffold_1315_curated_8
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14826..15626)
DNA (801bp) protein (267aa)
Transcriptional regulator n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WEQ6_9GAMM
Transcriptional regulator {ECO:0000313|EMBL:EIL97947.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
transcriptional regulator
scnpilot_solids1_trim150_scaffold_1315_curated_9
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15761..17224
DNA (1464bp) protein (488aa)
Glucose-6-phosphate 1-dehydrogenase {ECO:0000256|HAMAP-Rule:MF_00966, ECO:0000256|RuleBase:RU000497}; Short=G6PD {ECO:0000256|HAMAP-Rule:MF_00966};; EC=1.1.1.49 {ECO:0000256|HAMAP-Rule:MF_00966, ECO:0000256|RuleBase:RU000497};; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
Glucose-6-phosphate 1-dehydrogenase n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WEQ5_9GAMM
glucose-6-phosphate 1-dehydrogenase
scnpilot_solids1_trim150_scaffold_1315_curated_10
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17322..18035
DNA (714bp) protein (238aa)
6-phosphogluconolactonase n=1 Tax=Rhodanobacter denitrificans RepID=M4NHK6_9GAMM
6-phosphogluconolactonase
6-phosphogluconolactonase {ECO:0000313|EMBL:AGG87311.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids1_trim150_scaffold_1315_curated_11
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18142..19968
DNA (1827bp) protein (609aa)
6-phosphogluconate dehydratase n=1 Tax=Rhodanobacter denitrificans RepID=M4NA70_9GAMM
6-phosphogluconate dehydratase {ECO:0000313|EMBL:AGG87310.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
6-phosphogluconate dehydratase
scnpilot_solids1_trim150_scaffold_1315_curated_12
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20113..20778
DNA (666bp) protein (222aa)
2-keto-3-deoxy-phosphogluconate aldolase (EC:4.1.2.14)
2-keto-3-deoxy-phosphogluconate aldolase {ECO:0000313|EMBL:AGG87309.1}; EC=4.1.2.14 {ECO:0000313|EMBL:AGG87309.1};; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
Keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase n=1 Tax=Rhodanobacter denitrificans RepID=I4WUV3_9GAMM
scnpilot_solids1_trim150_scaffold_1315_curated_13
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20846..21667
DNA (822bp) protein (274aa)
Thiol-disulfide isomerase-like thioredoxin n=1 Tax=Rhodanobacter denitrificans RepID=M4NCZ5_9GAMM
thiol-disulfide isomerase-like thioredoxin
Thiol-disulfide isomerase-like thioredoxin {ECO:0000313|EMBL:AGG87308.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids1_trim150_scaffold_1315_curated_14
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21761..22465)
DNA (705bp) protein (235aa)
RNA polymerase sigma factor n=1 Tax=Rhodanobacter denitrificans RepID=M4NC10_9GAMM
RNA polymerase sigma factor, sigma-70 family
RNA polymerase sigma factor {ECO:0000256|RuleBase:RU000716}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids1_trim150_scaffold_1315_curated_15
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22521..23144)
DNA (624bp) protein (208aa)
GTP cyclohydrolase 1 {ECO:0000256|HAMAP-Rule:MF_00223, ECO:0000256|SAAS:SAAS00021192}; EC=3.5.4.16 {ECO:0000256|HAMAP-Rule:MF_00223, ECO:0000256|SAAS:SAAS00021179};; GTP cyclohydrolase I {ECO:0000256|HAMAP-Rule:MF_00223}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
GTP cyclohydrolase 1 n=1 Tax=Rhodanobacter denitrificans RepID=I4WUV0_9GAMM
GTP cyclohydrolase I
scnpilot_solids1_trim150_scaffold_1315_curated_16
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23309..23839
DNA (531bp) protein (177aa)
Putative outer membrane protein n=1 Tax=Rhodanobacter denitrificans RepID=M4NA66_9GAMM
putative outer membrane protein
Putative outer membrane protein {ECO:0000313|EMBL:AGG87305.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids1_trim150_scaffold_1315_curated_17
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23850..24194
DNA (345bp) protein (115aa)
Plastocyanin n=1 Tax=Rhodanobacter denitrificans RepID=I4WUU8_9GAMM
plastocyanin
Plastocyanin {ECO:0000313|EMBL:AGG87304.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids1_trim150_scaffold_1315_curated_18
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24318..24659)
DNA (342bp) protein (114aa)
Uncharacterized protein n=1 Tax=Rhodanobacter denitrificans RepID=I4WUU7_9GAMM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGG87303.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids1_trim150_scaffold_1315_curated_19
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24786..27227)
DNA (2442bp) protein (814aa)
Dipeptidyl aminopeptidase/acylaminoacyl peptidase n=1 Tax=Rhodanobacter denitrificans RepID=I4WUU6_9GAMM
Dipeptidyl aminopeptidase/acylaminoacyl peptidase {ECO:0000313|EMBL:AGG87302.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
dipeptidyl aminopeptidase/acylaminoacyl peptidase
scnpilot_solids1_trim150_scaffold_1315_curated_20
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27375..29537
DNA (2163bp) protein (721aa)
prolyl oligopeptidase (EC:3.4.21.26)
Prolyl endopeptidase n=1 Tax=Rhodanobacter denitrificans RepID=I4WUU5_9GAMM
Prolyl endopeptidase {ECO:0000313|EMBL:EIL97936.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
scnpilot_solids1_trim150_scaffold_1315_curated_21
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29591..30064)
DNA (474bp) protein (158aa)
Uncharacterized protein n=1 Tax=Rhodanobacter denitrificans RepID=I4WUU4_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL97935.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_1315_curated_22
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30281..30943
DNA (663bp) protein (221aa)
Putative esterase n=1 Tax=Rhodanobacter denitrificans RepID=I4WUU3_9GAMM
putative esterase
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
scnpilot_solids1_trim150_scaffold_1315_curated_23
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30974..32026
DNA (1053bp) protein (351aa)
Sensory transduction protein kinase AlgZ n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WEP2_9GAMM
Histidine kinase
Sensory transduction protein kinase AlgZ {ECO:0000313|EMBL:EIL97933.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
scnpilot_solids1_trim150_scaffold_1315_curated_24
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

32026..32730
DNA (705bp) protein (235aa)
Putative two-component system response regulator n=1 Tax=Rhodanobacter denitrificans RepID=I4WUU1_9GAMM
response regulator of the LytR/AlgR family
Response regulator of the LytR/AlgR family {ECO:0000313|EMBL:AGG87295.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids1_trim150_scaffold_1315_curated_25
Arenimonas metalli, Arenimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

32997..33977
DNA (981bp) protein (327aa)
Putative uncharacterized protein n=1 Tax=Comamonas testosteroni (strain CNB-2) RepID=D0J482_COMT2
Uncharacterized protein {ECO:0000313|EMBL:KFN46430.1}; TaxID=1384056 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Arenimonas.;" source="Arenimonas metalli CF5-1.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_1315_curated_26
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

34098..34310
DNA (213bp) protein (71aa)
Uncharacterized protein n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WEN8_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL97929.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
Protein of unknown function (DUF2945)
scnpilot_solids1_trim150_scaffold_1315_curated_27
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

34312..34857
DNA (546bp) protein (182aa)
Uncharacterized protein n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WEN7_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL97928.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_1315_curated_28
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

34952..35590
DNA (639bp) protein (213aa)
Uncharacterized protein n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WPI0_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIM01372.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
hypothetical protein
Displaying 28 items

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