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scnpilot_solids1_trim150_scaffold_965_curated

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Displaying 19 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids1_trim150_scaffold_965_curated_1
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(2..1222)
DNA (1221bp) protein (407aa)
Membrane protein insertase YidC n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WBW4_9GAMM
Membrane protein insertase YidC {ECO:0000256|HAMAP-Rule:MF_01810, ECO:0000256|SAAS:SAAS00003942}; Foldase YidC {ECO:0000256|HAMAP-Rule:MF_01810}; Membrane integrase YidC {ECO:0000256|HAMAP-Rule:MF_01810}; Membrane protein YidC {ECO:0000256|HAMAP-Rule:MF_01810}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
preprotein translocase subunit YidC
scnpilot_solids1_trim150_scaffold_965_curated_2
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(1287..1589)
DNA (303bp) protein (101aa)
ribonuclease P protein component (EC:3.1.26.5)
Ribonuclease P protein component n=2 Tax=Rhodanobacter denitrificans RepID=M4NUB6_9GAMM
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
scnpilot_solids1_trim150_scaffold_965_curated_3
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(1706..1840)
DNA (135bp) protein (45aa)
50S ribosomal protein L34 n=1 Tax=Rhodanobacter denitrificans RepID=I4WUI4_9GAMM
ribosomal protein L34
50S ribosomal protein L34 {ECO:0000256|HAMAP-Rule:MF_00391, ECO:0000256|SAAS:SAAS00020245}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids1_trim150_scaffold_965_curated_4
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2035..3363
DNA (1329bp) protein (443aa)
Chromosomal replication initiator protein DnaA n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WBW1_9GAMM
Chromosomal replication initiator protein DnaA {ECO:0000256|HAMAP-Rule:MF_00377, ECO:0000256|SAAS:SAAS00009621}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
chromosomal replication initiator protein DnaA
scnpilot_solids1_trim150_scaffold_965_curated_5
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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3608..4708
DNA (1101bp) protein (367aa)
DNA polymerase III, beta subunit (EC:2.7.7.7)
DNA polymerase III subunit beta {ECO:0000256|PIRNR:PIRNR000804, ECO:0000256|SAAS:SAAS00018186}; EC=2.7.7.7 {ECO:0000256|PIRNR:PIRNR000804, ECO:0000256|SAAS:SAAS00018259};; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
DNA polymerase III subunit beta n=1 Tax=Rhodanobacter denitrificans RepID=M4NA00_9GAMM
scnpilot_solids1_trim150_scaffold_965_curated_6
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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4781..5884
DNA (1104bp) protein (368aa)
DNA replication and repair protein RecF n=1 Tax=Rhodanobacter denitrificans RepID=M4NH85_9GAMM
DNA replication and repair protein RecF
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
scnpilot_solids1_trim150_scaffold_965_curated_7
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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5980..8412
DNA (2433bp) protein (811aa)
DNA gyrase subunit B (EC:5.99.1.3)
DNA gyrase subunit B {ECO:0000256|HAMAP-Rule:MF_01898, ECO:0000256|RuleBase:RU003363}; EC=5.99.1.3 {ECO:0000256|HAMAP-Rule:MF_01898, ECO:0000256|RuleBase:RU003363};; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
DNA gyrase subunit B n=1 Tax=Rhodanobacter denitrificans RepID=I4WUI8_9GAMM
scnpilot_solids1_trim150_scaffold_965_curated_8
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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8673..9938
DNA (1266bp) protein (422aa)
Uncharacterized protein n=1 Tax=Rhodanobacter denitrificans RepID=I4WUI9_9GAMM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGG87193.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids1_trim150_scaffold_965_curated_9
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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10156..10815
DNA (660bp) protein (220aa)
TonB family protein n=1 Tax=Rhodanobacter denitrificans RepID=M4NA15_9GAMM
TonB family protein
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
scnpilot_solids1_trim150_scaffold_965_curated_10
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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10872..11645
DNA (774bp) protein (258aa)
Biopolymer transport protein n=1 Tax=Rhodanobacter denitrificans RepID=M4NA03_9GAMM
biopolymer transport protein
Biopolymer transport protein {ECO:0000313|EMBL:AGG87195.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids1_trim150_scaffold_965_curated_11
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11657..12079
DNA (423bp) protein (141aa)
Biopolymer transport ExbD1 protein n=1 Tax=Rhodanobacter denitrificans RepID=I4WUJ2_9GAMM
biopolymer transport protein
Biopolymer transport protein {ECO:0000313|EMBL:AGG87196.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids1_trim150_scaffold_965_curated_12
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12084..12488
DNA (405bp) protein (135aa)
Biopolymer transport protein n=1 Tax=Rhodanobacter denitrificans RepID=I4WUJ3_9GAMM
biopolymer transport protein
Biopolymer transport protein {ECO:0000313|EMBL:AGG87197.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids1_trim150_scaffold_965_curated_13
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12581..13324)
DNA (744bp) protein (248aa)
Pyridoxine 5'-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00279, ECO:0000256|SAAS:SAAS00088558}; Short=PNP synthase {ECO:0000256|HAMAP-Rule:MF_00279};; EC=2.6.99.2 {ECO:0000256|HAMAP-Rule:MF_00279, ECO:0000256|SAAS:SAAS00088588};; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
pyridoxine 5'-phosphate synthase (EC:2.6.99.2)
Pyridoxine 5'-phosphate synthase n=1 Tax=Rhodanobacter denitrificans RepID=I4WUJ4_9GAMM
scnpilot_solids1_trim150_scaffold_965_curated_14
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(13404..14117)
DNA (714bp) protein (238aa)
Phosphopantetheinyl transferase n=1 Tax=Rhodanobacter sp. 115 RepID=I4W886_9GAMM
Phosphopantetheinyl transferase {ECO:0000313|EMBL:EIL95677.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
phosphopantetheinyl transferase
scnpilot_solids1_trim150_scaffold_965_curated_15
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14114..15571)
DNA (1458bp) protein (486aa)
Glutamate synthase subunit beta {ECO:0000313|EMBL:EIL87979.1}; EC=1.4.1.13 {ECO:0000313|EMBL:EIL87979.1};; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
gltD; glutamate synthase small subunit oxidoreductase (EC:1.4.1.13); K00266 glutamate synthase (NADPH/NADH) small chain [EC:1.4.1.13 1.4.1.14]
Glutamate synthase subunit beta n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VL88_9GAMM
scnpilot_solids1_trim150_scaffold_965_curated_16
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(15593..20278)
DNA (4686bp) protein (1562aa)
gltS; ferredoxin-dependent glutamate synthase (EC:1.4.7.1); K00284 glutamate synthase (ferredoxin) [EC:1.4.7.1]
Glutamate synthase, large subunit n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VUA1_9GAMM
Glutamate synthase, large subunit {ECO:0000313|EMBL:EIL90792.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
scnpilot_solids1_trim150_scaffold_965_curated_17
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20518..24006
DNA (3489bp) protein (1163aa)
Multi-sensor hybrid histidine kinase n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WBV0_9GAMM
Multi-sensor hybrid histidine kinase {ECO:0000313|EMBL:EIL96941.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
Na+/proline symporter
scnpilot_solids1_trim150_scaffold_965_curated_18
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24259..24936)
DNA (678bp) protein (226aa)
LuxR family two component transcriptional regulator n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WBU9_9GAMM
LuxR family two component transcriptional regulator {ECO:0000313|EMBL:EIL96940.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain
scnpilot_solids1_trim150_scaffold_965_curated_19
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25018..25902)
DNA (885bp) protein (295aa)
Acetyl-coenzyme A synthetase {ECO:0000256|HAMAP-Rule:MF_01123}; Short=AcCoA synthetase {ECO:0000256|HAMAP-Rule:MF_01123};; Short=Acs {ECO:0000256|HAMAP-Rule:MF_01123};; EC=6.2.1.1 {ECO:0000256|HAMAP-Rule:MF_01123};; Acetate--CoA ligase {ECO:0000256|HAMAP-Rule:MF_01123}; Acyl-activating enzyme {ECO:0000256|HAMAP-Rule:MF_01123}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
acetyl-coenzyme A synthetase (EC:6.2.1.1)
Acetyl-coenzyme A synthetase n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WBU8_9GAMM
Displaying 19 items

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