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scnpilot_solids1_trim150_scaffold_1563_curated

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Displaying 30 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids1_trim150_scaffold_1563_curated_1
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(3..146)
DNA (144bp) protein (48aa)
tRNA 2-thiocytidine biosynthesis protein TtcA n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WCU5_9GAMM
putative ATPase of the PP-loop superfamily implicated in cell cycle control
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
scnpilot_solids1_trim150_scaffold_1563_curated_2
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

264..470
DNA (207bp) protein (69aa)
Uncharacterized protein n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WCU4_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL97285.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
uncharacterized conserved small protein containing a coiled-coil domain
scnpilot_solids1_trim150_scaffold_1563_curated_3
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

490..1092
DNA (603bp) protein (201aa)
Acetyltransferase, ribosomal protein N-acetylase n=1 Tax=Rhodanobacter denitrificans RepID=I4WJY4_9GAMM
acetyltransferase, ribosomal protein N-acetylase
Acetyltransferase, ribosomal protein N-acetylase {ECO:0000313|EMBL:AGG90647.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids1_trim150_scaffold_1563_curated_4
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1201..2592)
DNA (1392bp) protein (464aa)
CDP-diacylglycerol--serine O-phosphatidyltransferase {ECO:0000256|PIRNR:PIRNR000850}; EC=2.7.8.8 {ECO:0000256|PIRNR:PIRNR000850};; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
Phosphatidylserine synthase n=1 Tax=Rhodanobacter denitrificans RepID=I4WJY3_9GAMM
phosphatidylserine/phosphatidylglycerophosphate/cardiolipin synthase
scnpilot_solids1_trim150_scaffold_1563_curated_5
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2697..3095)
DNA (399bp) protein (133aa)
Uncharacterized protein n=1 Tax=Rhodanobacter denitrificans RepID=M4NIC3_9GAMM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGG90649.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids1_trim150_scaffold_1563_curated_6
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3238..6120)
DNA (2883bp) protein (961aa)
Zinc protease n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WF32_9GAMM
Zinc protease {ECO:0000313|EMBL:EIL98073.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
putative Zn-dependent peptidase
scnpilot_solids1_trim150_scaffold_1563_curated_7
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6385..6588
DNA (204bp) protein (68aa)
Uncharacterized protein n=1 Tax=Rhodanobacter denitrificans RepID=M4NT33_9GAMM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGG90651.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids1_trim150_scaffold_1563_curated_8
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6630..7103
DNA (474bp) protein (158aa)
tRNA (cytidine(34)-2'-O)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01885}; EC=2.1.1.207 {ECO:0000256|HAMAP-Rule:MF_01885};; tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL {ECO:0000256|HAMAP-Rule:MF_01885}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
tRNA (cytidine(34)-2'-O)-methyltransferase n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WF34_9GAMM
putative rRNA methylase SpoU family
scnpilot_solids1_trim150_scaffold_1563_curated_9
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7248..7898
DNA (651bp) protein (217aa)
Sterol-binding domain-containing protein n=1 Tax=Rhodanobacter denitrificans RepID=I4WJX8_9GAMM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGG90653.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids1_trim150_scaffold_1563_curated_10
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7895..9544
DNA (1650bp) protein (550aa)
Probable protein kinase UbiB {ECO:0000256|SAAS:SAAS00063507}; EC=2.7.-.- {ECO:0000256|SAAS:SAAS00063486};; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
2-octaprenylphenol hydroxylase (EC:1.14.13.-)
Putative ubiquinone biosynthesis protein UbiB n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WF36_9GAMM
scnpilot_solids1_trim150_scaffold_1563_curated_11
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9677..10384
DNA (708bp) protein (236aa)
23S RNA-specific pseudouridylate synthase (EC:5.4.99.-)
Pseudouridine synthase n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W783_9GAMM
23S RNA-specific pseudouridylate synthase {ECO:0000313|EMBL:EIL95324.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
scnpilot_solids1_trim150_scaffold_1563_curated_12
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10511..10933
DNA (423bp) protein (141aa)
Protein chain release factor B n=1 Tax=Rhodanobacter denitrificans RepID=I4WJX5_9GAMM
protein chain release factor B
Protein chain release factor B {ECO:0000313|EMBL:AGG90656.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids1_trim150_scaffold_1563_curated_13
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10930..11526
DNA (597bp) protein (199aa)
1-acyl-sn-glycerol-3-phosphate acyltransferase n=1 Tax=Rhodanobacter denitrificans RepID=M4NKP4_9GAMM
1-acyl-sn-glycerol-3-phosphate acyltransferase
1-acyl-sn-glycerol-3-phosphate acyltransferase {ECO:0000313|EMBL:AGG90657.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids1_trim150_scaffold_1563_curated_14
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11863..12879
DNA (1017bp) protein (339aa)
NAD-dependent epimerase/dehydratase n=1 Tax=Rhodanobacter denitrificans RepID=I4WJX3_9GAMM
nucleoside-diphosphate-sugar epimerase
Nucleoside-diphosphate-sugar epimerase {ECO:0000313|EMBL:AGG90658.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids1_trim150_scaffold_1563_curated_15
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12845..14236
DNA (1392bp) protein (464aa)
Glycosyl transferase n=1 Tax=Rhodanobacter denitrificans RepID=M4NID3_9GAMM
glycosyl transferase
Glycosyl transferase {ECO:0000313|EMBL:AGG90659.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids1_trim150_scaffold_1563_curated_16
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14224..15639
DNA (1416bp) protein (472aa)
Uncharacterized protein n=2 Tax=Rhodanobacter denitrificans RepID=M4NI84_9GAMM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGG90660.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids1_trim150_scaffold_1563_curated_17
BJP_IG2103_Dechloromonas_63_51, Dechloromonas, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15662..16435
DNA (774bp) protein (258aa)
Acyltransferase 3 n=1 Tax=Thauera phenylacetica B4P RepID=N6YXE2_9RHOO
acyltransferase 3
Tax=BJP_IG2103_Dechloromonas_63_51
scnpilot_solids1_trim150_scaffold_1563_curated_18
unknown

Not on your lists

comp(16748..17587)
DNA (840bp) protein (280aa)

This feature has no annotations

scnpilot_solids1_trim150_scaffold_1563_curated_19
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17646..18686)
DNA (1041bp) protein (347aa)
Transcriptional regulator n=1 Tax=Rhodanobacter denitrificans RepID=I4WJW9_9GAMM
transcriptional regulator
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
scnpilot_solids1_trim150_scaffold_1563_curated_20
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18809..20419
DNA (1611bp) protein (537aa)
malate synthase (EC:2.3.3.9)
Malate synthase {ECO:0000313|EMBL:AGG90663.1}; EC=2.3.3.9 {ECO:0000313|EMBL:AGG90663.1};; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
Malate synthase n=1 Tax=Rhodanobacter denitrificans RepID=M4NLW9_9GAMM
scnpilot_solids1_trim150_scaffold_1563_curated_21
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20561..21859
DNA (1299bp) protein (433aa)
isocitrate lyase (EC:4.1.3.1)
Isocitrate lyase n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WF43_9GAMM
Isocitrate lyase {ECO:0000313|EMBL:EIL98084.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
scnpilot_solids1_trim150_scaffold_1563_curated_22
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21950..23746)
DNA (1797bp) protein (599aa)
NhaP-type Na+(K+)/H+ antiporter n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WEY8_9GAMM
NhaP-type Na+(K+)/H+ antiporter {ECO:0000313|EMBL:EIL98029.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
NhaP-type Na+(K+)/H+ antiporter
scnpilot_solids1_trim150_scaffold_1563_curated_23
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23875..25368)
DNA (1494bp) protein (498aa)
Mg chelatase subunit ChlI n=1 Tax=Rhodanobacter denitrificans RepID=I4WJW5_9GAMM
Mg chelatase-related protein
Mg chelatase-related protein {ECO:0000313|EMBL:AGG90666.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids1_trim150_scaffold_1563_curated_24
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25517..25777)
DNA (261bp) protein (87aa)
Uncharacterized protein n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WEZ0_9GAMM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGG90667.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids1_trim150_scaffold_1563_curated_25
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25958..26296
DNA (339bp) protein (113aa)
Nitrogen regulatory protein P-II 2 n=1 Tax=Rhodanobacter denitrificans RepID=I4WJW3_9GAMM
nitrogen regulatory protein PII
Nitrogen regulatory protein PII {ECO:0000313|EMBL:AGG90668.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids1_trim150_scaffold_1563_curated_26
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26755..29205
DNA (2451bp) protein (817aa)
Ribonucleoside-diphosphate reductase {ECO:0000256|RuleBase:RU003410}; EC=1.17.4.1 {ECO:0000256|RuleBase:RU003410};; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
Ribonucleoside-diphosphate reductase n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W793_9GAMM
ribonucleoside-diphosphate reductase, alpha subunit
scnpilot_solids1_trim150_scaffold_1563_curated_27
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29302..30327
DNA (1026bp) protein (342aa)
Ribonucleoside-diphosphate reductase subunit beta n=1 Tax=Rhodanobacter denitrificans RepID=I4WJW0_9GAMM
ribonucleotide reductase, beta subunit
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
scnpilot_solids1_trim150_scaffold_1563_curated_28
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30410..30811
DNA (402bp) protein (134aa)
Methicillin resistance protein n=1 Tax=Rhodanobacter denitrificans RepID=I4WJV8_9GAMM
putative transcriptional regulator
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
scnpilot_solids1_trim150_scaffold_1563_curated_29
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30813..32681
DNA (1869bp) protein (623aa)
Antirepressor regulating drug resistance protein n=1 Tax=Rhodanobacter denitrificans RepID=M4NIE7_9GAMM
antirepressor regulating drug resistance protein
Antirepressor regulating drug resistance protein {ECO:0000313|EMBL:AGG90674.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids1_trim150_scaffold_1563_curated_30
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(32825..34324)
DNA (1500bp) protein (500aa)
Dipeptidyl aminopeptidase/acylaminoacyl peptidase n=1 Tax=Rhodanobacter denitrificans RepID=M4NI99_9GAMM
dipeptidyl aminopeptidase/acylaminoacyl peptidase
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
Displaying 30 items

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