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scnpilot_solids1_trim150_scaffold_139_curated

Search features with annotation key words

Displaying items 1-30 of 90 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids1_trim150_scaffold_139_curated_1
Flavihumibacter solisilvae, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

164..3865
DNA (3702bp) protein (1234aa)
Uncharacterized protein n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TKF2_NIAKG
Uncharacterized protein {ECO:0000313|EMBL:KIC92934.1}; TaxID=1349421 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter solisilvae.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_139_curated_2
unknown

Not on your lists

4269..4589
DNA (321bp) protein (107aa)

This feature has no annotations

scnpilot_solids1_trim150_scaffold_139_curated_3
Sphingobacterium sp. PM2-P1-29, Sphingobacterium, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

4653..5813
DNA (1161bp) protein (387aa)
RNA methylase; K07444 putative N6-adenine-specific DNA methylase [EC:2.1.1.-]
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI00036C1935
Putative N6-adenine-specific DNA methylase {ECO:0000313|EMBL:CDS94155.1}; TaxID=403776 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Sphingobacterium.;" source="Sphingobacterium sp. PM2-P1-29.;"
scnpilot_solids1_trim150_scaffold_139_curated_4
unknown

Not on your lists

comp(5909..6361)
DNA (453bp) protein (151aa)

This feature has no annotations

scnpilot_solids1_trim150_scaffold_139_curated_5
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(6550..8247)
DNA (1698bp) protein (566aa)
glutaminyl-tRNA synthetase; K01886 glutaminyl-tRNA synthetase [EC:6.1.1.18]
Glutamine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00126, ECO:0000256|SAAS:SAAS00016670}; EC=6.1.1.18 {ECO:0000256|HAMAP-Rule:MF_00126, ECO:0000256|SAAS:SAAS00023088};; Glutaminyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00126}; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
Glutamine--tRNA ligase n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PDB9_CHIPD
scnpilot_solids1_trim150_scaffold_139_curated_6
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(8337..9116)
DNA (780bp) protein (260aa)
Uncharacterized protein n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PE96_CHIPD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACU63305.1}; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
scnpilot_solids1_trim150_scaffold_139_curated_7
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

9214..10260
DNA (1047bp) protein (349aa)
Uncharacterized protein n=1 Tax=Niabella soli DSM 19437 RepID=H1NMT6_9SPHI
Uncharacterized protein {ECO:0000313|EMBL:AHF17177.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_139_curated_8
RIFOXYD2_FULL_Sphingobacteria_35_12_curated, Sphingobacteria, Bacteroidetes, Bacteria

Not on your lists

10290..10841
DNA (552bp) protein (184aa)
YceI family protein n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8THX3_NIAKG
hypothetical protein
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
scnpilot_solids1_trim150_scaffold_139_curated_9
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

10848..11513
DNA (666bp) protein (222aa)
lysine transporter LysE n=1 Tax=Niabella aurantiaca RepID=UPI0003681322
Lysine transporter LysE {ECO:0000313|EMBL:AHF14133.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_139_curated_10
Prevotella amnii, Prevotella, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

11643..14993
DNA (3351bp) protein (1117aa)
Uncharacterized protein n=2 Tax=Prevotella bivia RepID=D1XVU8_9BACT
Restriction endonuclease {ECO:0000313|EMBL:KGF50739.1}; TaxID=1401066 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Prevotellaceae; Prevotella.;" source="Prevotella amnii DNF00058.;"
type IIS restriction endonuclease
scnpilot_solids1_trim150_scaffold_139_curated_11
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(14836..15420)
DNA (585bp) protein (195aa)
SSS sodium solute transporter superfamily n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8T822_NIAKG
SSS sodium solute transporter superfamily protein
SSS sodium solute transporter superfamily {ECO:0000313|EMBL:AEV96960.1}; Flags: Precursor;; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
scnpilot_solids1_trim150_scaffold_139_curated_12
Sphingobacterium sp. 21, Sphingobacterium, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(15509..16444)
DNA (936bp) protein (312aa)
N-acetylneuraminate lyase; K01639 N-acetylneuraminate lyase [EC:4.1.3.3]
N-acetylneuraminate lyase {ECO:0000313|EMBL:ADZ81101.1}; EC=4.1.3.3 {ECO:0000313|EMBL:ADZ81101.1};; TaxID=743722 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Sphingobacterium.;" source="Sphingobacterium sp. (strain 21).;"
N-acetylneuraminate lyase n=1 Tax=Sphingobacterium sp. (strain 21) RepID=F4C8Q9_SPHS2
scnpilot_solids1_trim150_scaffold_139_curated_13
Sphingobacterium sp. 21, Sphingobacterium, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(16475..17710)
DNA (1236bp) protein (412aa)
exo-alpha-sialidase; K01186 sialidase-1 [EC:3.2.1.18]
Exo-alpha-sialidase n=1 Tax=Sphingobacterium sp. (strain 21) RepID=F4C8R0_SPHS2
Exo-alpha-sialidase {ECO:0000313|EMBL:ADZ81102.1}; TaxID=743722 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Sphingobacterium.;" source="Sphingobacterium sp. (strain 21).;"
scnpilot_solids1_trim150_scaffold_139_curated_14
Pedobacter sp. V48, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(17769..19241)
DNA (1473bp) protein (491aa)
RagB/SusD domain protein n=1 Tax=Pedobacter heparinus (strain ATCC 13125 / DSM 2366 / NCIB 9290) RepID=C6XY11_PEDHD
Carbohydrate-binding protein SusD {ECO:0000313|EMBL:ETZ23177.1}; TaxID=509635 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter sp. V48.;"
RagB/SusD domain-containing protein
scnpilot_solids1_trim150_scaffold_139_curated_15
Pedobacter heparinus, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(19315..22677)
DNA (3363bp) protein (1121aa)
TonB-dependent receptor plug n=1 Tax=Pedobacter heparinus (strain ATCC 13125 / DSM 2366 / NCIB 9290) RepID=C6XY12_PEDHD
TonB-dependent receptor plug {ECO:0000313|EMBL:ACU04430.1}; TaxID=485917 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter heparinus (strain ATCC 13125 / DSM 2366 / NCIB 9290).;"
TonB-dependent receptor plug
scnpilot_solids1_trim150_scaffold_139_curated_16
Echinicola vietnamensis, Echinicola, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(22879..23811)
DNA (933bp) protein (311aa)
Arylsulfatase A family protein n=1 Tax=Echinicola vietnamensis (strain DSM 17526 / LMG 23754 / KMM 6221) RepID=L0G6B7_ECHVK
arylsulfatase A family protein
Arylsulfatase A family protein {ECO:0000313|EMBL:AGA80526.1}; TaxID=926556 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cyclobacteriaceae; Echinicola.;" source="Echinicola vietnamensis (strain DSM 17526 / LMG 23754 / KMM 6221).;"
scnpilot_solids1_trim150_scaffold_139_curated_17
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

comp(23898..25031)
DNA (1134bp) protein (378aa)
Uncharacterized protein n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D3M1_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EDY18851.1}; Flags: Precursor;; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
scnpilot_solids1_trim150_scaffold_139_curated_18
Candidatus Solibacter usitatus, Candidatus Solibacter, Solibacterales, Solibacteres, Acidobacteria, Bacteria

Not on your lists

comp(25135..25545)
DNA (411bp) protein (137aa)
dihydroxyacid dehydratase (EC:4.2.1.9); K01687 dihydroxy-acid dehydratase [EC:4.2.1.9]
Dihydroxyacid dehydratase {ECO:0000313|EMBL:ABJ86810.1}; EC=4.2.1.9 {ECO:0000313|EMBL:ABJ86810.1};; TaxID=234267 species="Bacteria; Acidobacteria; Solibacteres; Solibacterales; Solibacteraceae; Candidatus Solibacter.;" source="Solibacter usitatus (strain Ellin6076).;"
Dihydroxyacid dehydratase n=1 Tax=Solibacter usitatus (strain Ellin6076) RepID=Q01U60_SOLUE
scnpilot_solids1_trim150_scaffold_139_curated_19
Janthinobacterium lividum, Janthinobacterium, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25538..26869)
DNA (1332bp) protein (444aa)
ilvd3; dihydroxy-acid dehydratase; K01687 dihydroxy-acid dehydratase [EC:4.2.1.9]
hypothetical protein n=1 Tax=Acidobacteriaceae bacterium KBS 96 RepID=UPI000376E867
Dihydroxyacid dehydratase/phosphogluconate dehydratase {ECO:0000313|EMBL:EZP38413.1}; TaxID=29581 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Janthinobacterium.;" source="Janthinobacterium lividum.;"
scnpilot_solids1_trim150_scaffold_139_curated_20
Runella slithyformis, Runella, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(26963..27904)
DNA (942bp) protein (314aa)
hypothetical protein n=1 Tax=Rudanella lutea RepID=UPI000362C5E5
D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding protein
D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding protein {ECO:0000313|EMBL:AEI49585.1}; TaxID=761193 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Runella.;" source="Runella slithyformis (strain ATCC 29530 / DSM 19594 / LMG 11500 /; NCIMB 11436 / LSU 4).;"
scnpilot_solids1_trim150_scaffold_139_curated_21
Enhydrobacter aerosaccus, Enhydrobacter, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28234..29472
DNA (1239bp) protein (413aa)
Transposase, IS4 family n=1 Tax=Enhydrobacter aerosaccus SK60 RepID=C8PXG7_9GAMM
Transposase, IS4 family {ECO:0000313|EMBL:EEV23019.1}; TaxID=553217 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Moraxellaceae; Enhydrobacter.;" source="Enhydrobacter aerosaccus SK60.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_139_curated_22
Pedobacter heparinus, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(29571..30257)
DNA (687bp) protein (229aa)
Regulatory protein GntR HTH n=1 Tax=Pedobacter heparinus (strain ATCC 13125 / DSM 2366 / NCIB 9290) RepID=C6XY14_PEDHD
GntR family transcriptional regulator
Regulatory protein GntR HTH {ECO:0000313|EMBL:ACU04432.1}; TaxID=485917 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter heparinus (strain ATCC 13125 / DSM 2366 / NCIB 9290).;"
scnpilot_solids1_trim150_scaffold_139_curated_23
unknown

Not on your lists

comp(30589..30756)
DNA (168bp) protein (56aa)

This feature has no annotations

scnpilot_solids1_trim150_scaffold_139_curated_24
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(30886..31620)
DNA (735bp) protein (245aa)
MIP family channel protein n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TBJ4_NIAKG
MIP family channel protein; K02440 glycerol uptake facilitator protein
MIP family channel protein {ECO:0000313|EMBL:AEV97104.1}; Flags: Precursor;; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
scnpilot_solids1_trim150_scaffold_139_curated_25
Pedobacter sp. V48, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(31779..33269)
DNA (1491bp) protein (497aa)
Glycerol kinase {ECO:0000256|HAMAP-Rule:MF_00186, ECO:0000256|SAAS:SAAS00029376}; EC=2.7.1.30 {ECO:0000256|HAMAP-Rule:MF_00186, ECO:0000256|SAAS:SAAS00029376};; ATP:glycerol 3-phosphotransferase {ECO:0000256|HAMAP-Rule:MF_00186}; Glycerokinase {ECO:0000256|HAMAP-Rule:MF_00186}; TaxID=509635 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter sp. V48.;"
glycerol kinase (EC:2.7.1.30); K00864 glycerol kinase [EC:2.7.1.30]
glycerol kinase n=1 Tax=Segetibacter koreensis RepID=UPI0003725D07
scnpilot_solids1_trim150_scaffold_139_curated_26
Pedobacter glucosidilyticus, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(33464..34225)
DNA (762bp) protein (254aa)
Transcriptional regulator, DeoR family n=1 Tax=Sphingobacterium sp. (strain 21) RepID=F4C1V7_SPHS2
DeoR family transcriptional regulator; K02081 DeoR family transcriptional regulator, aga operon transcriptional repressor
Glucitol operon repressor {ECO:0000313|EMBL:KHJ39045.1}; TaxID=1122941 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter glucosidilyticus.;"
scnpilot_solids1_trim150_scaffold_139_curated_27
Winogradskyella psychrotolerans, Winogradskyella, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

34502..36148
DNA (1647bp) protein (549aa)
Glycerol-3-phosphate dehydrogenase {ECO:0000313|EMBL:EPR73941.1}; EC=1.1.5.3 {ECO:0000313|EMBL:EPR73941.1};; TaxID=641526 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Winogradskyella.;" source="Winogradskyella psychrotolerans RS-3.;"
Glycerol-3-phosphate dehydrogenase n=1 Tax=Winogradskyella psychrotolerans RS-3 RepID=S7VV33_9FLAO
sn-glycerol-3-phosphate dehydrogenase GlpA
scnpilot_solids1_trim150_scaffold_139_curated_28
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

36220..39513
DNA (3294bp) protein (1098aa)
TonB-dependent receptor plug n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PSE5_CHIPD
TonB-dependent receptor plug {ECO:0000313|EMBL:ACU62709.1}; Flags: Precursor;; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
TonB-dependent receptor plug
scnpilot_solids1_trim150_scaffold_139_curated_29
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

39525..41078
DNA (1554bp) protein (518aa)
Uncharacterized protein n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PSE4_CHIPD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACU62708.1}; Flags: Precursor;; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
scnpilot_solids1_trim150_scaffold_139_curated_30
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

41122..42645
DNA (1524bp) protein (508aa)
Uncharacterized protein n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PSE3_CHIPD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACU62707.1}; Flags: Precursor;; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
Displaying items 1-30 of 90 in total

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