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scnpilot_solids1_trim150_scaffold_298_curated_3

Organism: solids_Sphingobacteriales_4

near complete RP 51 / 55 MC: 1 BSCG 51 / 51 ASCG 12 / 38
Location: comp(3618..4187)

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase sigma-70 factor n=1 Tax=Pedobacter heparinus (strain ATCC 13125 / DSM 2366 / NCIB 9290) RepID=C6XVE1_PEDHD similarity UNIREF
DB: UNIREF100
  • Identity: 50.5
  • Coverage: 188.0
  • Bit_score: 183
  • Evalue 2.60e-43
RNA polymerase sigma-70 factor similarity KEGG
DB: KEGG
  • Identity: 50.5
  • Coverage: 188.0
  • Bit_score: 183
  • Evalue 8.20e-44
RNA polymerase sigma-70 factor {ECO:0000313|EMBL:ACU04007.1}; TaxID=485917 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter heparinus (strain ATCC 13125 / DSM 2366 / NCIB 9290).;" similarity UNIPROT
DB: UniProtKB
  • Identity: 50.5
  • Coverage: 188.0
  • Bit_score: 183
  • Evalue 3.70e-43

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Taxonomy

Pedobacter heparinus → Pedobacter → Sphingobacteriales → Sphingobacteriia → Bacteroidetes → Bacteria

Sequences

DNA sequence
Length: 570
ATGAGAGATTACTCATCATACGATAATGAAACACTTTTAGAATTACTTGCCCAGGGTGATGAATACGCCTTTACTGAAATTTATGACCGTTTTGGTAAAAAGTTATTTGCTGTAGCTTATAGCAGGTTAAAGGAAATTCAGGAAGCAGAAGACATCGTACATGATGTATTTGTAAGCCTTTGGGCAAACAGAAGTAAAGTAGAAGTAAAATCTTTGGAGAATTACCTGGCTGTCGCTACCAAATATACGGTGTTTGCTAAAATTAAAAAGAAGGAACGTCAACGCCTTTATAACCAGGCATCTCAGCAATCTCCGGTACATGAGTTAAATATTGAAGCATCCCTACACTATAAATATATTTTAGAAGCAGTAGAAAAAGAGATAGAAAAACTACCTGAAAAGTGCAAATTAATATTTAGATACAGCCGCAACGATAGATTATCTGCTAAAGAAATTGCAAAAAAGTTAGACATCTCTCCTAAAACAGTCGAAAATCAGCTAAATAAAGCGCTTAAGCAATTAAAGATTGTTGCCAAAACCTTTCTTTTTTTCTTTTTAATAAAGCTTTAA
PROTEIN sequence
Length: 190
MRDYSSYDNETLLELLAQGDEYAFTEIYDRFGKKLFAVAYSRLKEIQEAEDIVHDVFVSLWANRSKVEVKSLENYLAVATKYTVFAKIKKKERQRLYNQASQQSPVHELNIEASLHYKYILEAVEKEIEKLPEKCKLIFRYSRNDRLSAKEIAKKLDISPKTVENQLNKALKQLKIVAKTFLFFFLIKL*