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scnpilot_solids1_trim150_scaffold_298_curated

Search features with annotation key words

Displaying items 1-30 of 37 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids1_trim150_scaffold_298_curated_1
GWE2_Bacteroidetes_42_39_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(1..750)
DNA (750bp) protein (250aa)
Xylose isomerase domain protein TIM barrel id=4706573 bin=GWA2_Bacteroidetes_42_15 species=Dyadobacter fermentans genus=Dyadobacter taxon_order=Cytophagales taxon_class=Cytophagia phylum=Bacteroidetes tax=GWA2_Bacteroidetes_42_15 organism_group=Bacteroidetes
xylose isomerase domain-containing protein
Tax=GWE2_Bacteroidetes_42_39_curated
scnpilot_solids1_trim150_scaffold_298_curated_2
Cyclobacterium qasimii, Cyclobacterium, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(801..3239)
DNA (2439bp) protein (813aa)
Uncharacterized protein n=1 Tax=Cyclobacterium qasimii M12-11B RepID=S7VDK3_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EPR68315.1}; TaxID=641524 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cyclobacteriaceae; Cyclobacterium.;" source="Cyclobacterium qasimii M12-11B.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_298_curated_3
Pedobacter heparinus, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(3618..4187)
DNA (570bp) protein (190aa)
RNA polymerase sigma-70 factor n=1 Tax=Pedobacter heparinus (strain ATCC 13125 / DSM 2366 / NCIB 9290) RepID=C6XVE1_PEDHD
RNA polymerase sigma-70 factor
RNA polymerase sigma-70 factor {ECO:0000313|EMBL:ACU04007.1}; TaxID=485917 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter heparinus (strain ATCC 13125 / DSM 2366 / NCIB 9290).;"
scnpilot_solids1_trim150_scaffold_298_curated_4
GWE2_Bacteroidetes_42_39_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(4507..5970)
DNA (1464bp) protein (488aa)
alpha-L-fucosidase; K01206 alpha-L-fucosidase [EC:3.2.1.51]
Alpha-L-fucosidase id=4355086 bin=GWF2_Bacteroidetes_42_66 species=Sphingobacterium sp. genus=Sphingobacterium taxon_order=Sphingobacteriales taxon_class=Sphingobacteriia phylum=Bacteroidetes tax=GWF2_Bacteroidetes_42_66 organism_group=Bacteroidetes organism_desc=a73
Tax=GWE2_Bacteroidetes_42_39_curated
scnpilot_solids1_trim150_scaffold_298_curated_5
GWE2_Bacteroidetes_42_39_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(6023..6880)
DNA (858bp) protein (286aa)
heparan-alpha-glucosaminide N-acetyltransferase (EC:2.3.1.78)
Uncharacterized protein id=4993668 bin=GWA2_Bacteroidetes_42_15 species=Parabacteroides johnsonii genus=Parabacteroides taxon_order=Bacteroidales taxon_class=Bacteroidia phylum=Bacteroidetes tax=GWA2_Bacteroidetes_42_15 organism_group=Bacteroidetes
Tax=GWE2_Bacteroidetes_42_39_curated
scnpilot_solids1_trim150_scaffold_298_curated_6
GWE2_Bacteroidetes_42_39_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(6975..7133)
DNA (159bp) protein (53aa)
Uncharacterized protein id=1853400 bin=GWE2_Bacteroidetes_42_39 species=Parabacteroides johnsonii genus=Parabacteroides taxon_order=Bacteroidales taxon_class=Bacteroidia phylum=Bacteroidetes tax=GWE2_Bacteroidetes_42_39 organism_group=Bacteroidetes organism_desc=Good +
Tax=GWE2_Bacteroidetes_42_39_curated
scnpilot_solids1_trim150_scaffold_298_curated_7
Pedobacter heparinus, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(7240..7581)
DNA (342bp) protein (114aa)
RNA polymerase sigma-70 factor n=1 Tax=Pedobacter heparinus (strain ATCC 13125 / DSM 2366 / NCIB 9290) RepID=C6XVE1_PEDHD
RNA polymerase sigma-70 factor
RNA polymerase sigma-70 factor {ECO:0000313|EMBL:ACU04007.1}; TaxID=485917 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter heparinus (strain ATCC 13125 / DSM 2366 / NCIB 9290).;"
scnpilot_solids1_trim150_scaffold_298_curated_8
Pedobacter heparinus, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

7901..10027
DNA (2127bp) protein (709aa)
Putative uncharacterized protein n=1 Tax=Pedobacter heparinus (strain ATCC 13125 / DSM 2366 / NCIB 9290) RepID=C6XZ83_PEDHD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACU02565.1}; TaxID=485917 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter heparinus (strain ATCC 13125 / DSM 2366 / NCIB 9290).;"
scnpilot_solids1_trim150_scaffold_298_curated_9
Flavihumibacter solisilvae, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

10088..11329
DNA (1242bp) protein (414aa)
Aspartate aminotransferase {ECO:0000313|EMBL:KIC93198.1}; EC=2.6.1.1 {ECO:0000313|EMBL:KIC93198.1};; TaxID=1349421 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter solisilvae.;"
aspartate transaminase; K00812 aspartate aminotransferase [EC:2.6.1.1]
Aspartate transaminase n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TP79_NIAKG
scnpilot_solids1_trim150_scaffold_298_curated_10
Emticicia oligotrophica, Emticicia, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

11348..12391
DNA (1044bp) protein (348aa)
hypothetical protein n=1 Tax=Flexithrix dorotheae RepID=UPI00037F1561
glycoside hydrolase family 43
Glycoside hydrolase family 43 {ECO:0000313|EMBL:AFK02214.1}; Flags: Precursor;; TaxID=929562 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Emticicia.;" source="Emticicia oligotrophica (strain DSM 17448 / GPTSA100-15).;"
scnpilot_solids1_trim150_scaffold_298_curated_11
RBG_16_Ignavibacteria_35_7_curated, Ignavibacteriales, Ignavibacteria, Ignavibacteriae, Bacteria

Not on your lists

12915..14393
DNA (1479bp) protein (493aa)
cell filamentation protein Fic n=1 Tax=Aquimarina agarilytica RepID=UPI000289122B
Fic family protein
Tax=RBG_16_Ignavibacteria_35_7_curated
scnpilot_solids1_trim150_scaffold_298_curated_12
RIFCSPLOWO2_12_FULL_Bacteroidetes_31_6_curated, Bacteroidetes, Bacteria

Not on your lists

comp(14587..15855)
DNA (1269bp) protein (423aa)
HipA domain protein n=1 Tax=Emticicia oligotrophica (strain DSM 17448 / GPTSA100-15) RepID=I2EXB7_EMTOG
HipA domain protein
Tax=RIFCSPLOWO2_12_FULL_Bacteroidetes_31_6_curated
scnpilot_solids1_trim150_scaffold_298_curated_13
RIFCSPLOWO2_12_FULL_Bacteroidetes_35_15_curated, Bacteroidetes, Bacteria

Not on your lists

comp(15857..16174)
DNA (318bp) protein (106aa)
hypothetical protein n=1 Tax=Niabella aurantiaca RepID=UPI0003770882
helix-turn-helix domain protein
Tax=RIFCSPLOWO2_12_FULL_Bacteroidetes_35_15_curated
scnpilot_solids1_trim150_scaffold_298_curated_14
Sphingobacterium sp. 21, Sphingobacterium, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

16973..17662
DNA (690bp) protein (230aa)
SNARE associated Golgi protein-related protein n=1 Tax=Sphingobacterium sp. (strain 21) RepID=F4C1N2_SPHS2
hypothetical protein; K03975 membrane-associated protein
SNARE associated Golgi protein-related protein {ECO:0000313|EMBL:ADZ79305.1}; TaxID=743722 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Sphingobacterium.;" source="Sphingobacterium sp. (strain 21).;"
scnpilot_solids1_trim150_scaffold_298_curated_15
Flavihumibacter petaseus, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(18542..20035)
DNA (1494bp) protein (498aa)
Pyruvate kinase {ECO:0000256|RuleBase:RU000504}; EC=2.7.1.40 {ECO:0000256|RuleBase:RU000504};; TaxID=1220578 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter petaseus NBRC 106054.;"
pyruvate kinase; K00873 pyruvate kinase [EC:2.7.1.40]
Pyruvate kinase n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TGD6_NIAKG
scnpilot_solids1_trim150_scaffold_298_curated_16
Flavihumibacter solisilvae, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(20101..21081)
DNA (981bp) protein (327aa)
ATP-dependent 6-phosphofructokinase {ECO:0000256|HAMAP-Rule:MF_00339}; Short=ATP-PFK {ECO:0000256|HAMAP-Rule:MF_00339};; Short=Phosphofructokinase {ECO:0000256|HAMAP-Rule:MF_00339};; EC=2.7.1.11 {ECO:0000256|HAMAP-Rule:MF_00339, ECO:0000256|SAAS:SAAS00197180};; Phosphohexokinase {ECO:0000256|HAMAP-Rule:MF_00339}; TaxID=1349421 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter solisilvae.;"
6-phosphofructokinase; K00850 6-phosphofructokinase [EC:2.7.1.11]
6-phosphofructokinase n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TGD7_NIAKG
scnpilot_solids1_trim150_scaffold_298_curated_17
Mucilaginibacter paludis, Mucilaginibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

21334..23058
DNA (1725bp) protein (575aa)
Amino acid permease-associated region n=1 Tax=Mucilaginibacter paludis DSM 18603 RepID=H1Y2Y7_9SPHI
Amino acid permease-associated region {ECO:0000313|EMBL:EHQ28532.1}; Flags: Precursor;; TaxID=714943 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Mucilaginibacter.;" source="Mucilaginibacter paludis DSM 18603.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_298_curated_18
unknown

Not on your lists

comp(23389..24012)
DNA (624bp) protein (208aa)

This feature has no annotations

scnpilot_solids1_trim150_scaffold_298_curated_19
RIFOXYD2_FULL_Sphingobacteria_35_12_curated, Sphingobacteria, Bacteroidetes, Bacteria

Not on your lists

24171..24914
DNA (744bp) protein (248aa)
demethylmenaquinone methyltransferase; K03183 ubiquinone/menaquinone biosynthesis methyltransferase [EC:2.1.1.163 2.1.1.201]
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI00036B76F8
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
scnpilot_solids1_trim150_scaffold_298_curated_20
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

24887..25603
DNA (717bp) protein (239aa)
Uncharacterized protein n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TIG1_NIAKG
putative protein-translocating porin PorT
Uncharacterized protein {ECO:0000313|EMBL:AEW01777.1}; Flags: Precursor;; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
scnpilot_solids1_trim150_scaffold_298_curated_21
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

25947..26627
DNA (681bp) protein (227aa)
2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase {ECO:0000256|HAMAP-Rule:MF_00108}; EC=2.7.7.60 {ECO:0000256|HAMAP-Rule:MF_00108};; 4-diphosphocytidyl-2C-methyl-D-erythritol synthase {ECO:0000256|HAMAP-Rule:MF_00108}; MEP cytidylyltransferase {ECO:0000256|HAMAP-Rule:MF_00108}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; K00991 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase [EC:2.7.7.60]
2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase n=1 Tax=Niabella aurantiaca RepID=UPI000380360C
scnpilot_solids1_trim150_scaffold_298_curated_22
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(26660..28297)
DNA (1638bp) protein (546aa)
Type I phosphodiesterase/nucleotide pyrophosphatase n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PIN3_CHIPD
type I phosphodiesterase/nucleotide pyrophosphatase
Type I phosphodiesterase/nucleotide pyrophosphatase {ECO:0000313|EMBL:ACU58222.1}; Flags: Precursor;; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
scnpilot_solids1_trim150_scaffold_298_curated_23
RIFOXYD2_FULL_Sphingobacteria_35_12_curated, Sphingobacteria, Bacteroidetes, Bacteria

Not on your lists

comp(28887..29894)
DNA (1008bp) protein (336aa)
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI00037C371F
hypothetical protein
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
scnpilot_solids1_trim150_scaffold_298_curated_24
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(29998..30648)
DNA (651bp) protein (217aa)
uracil phosphoribosyltransferase; K00761 uracil phosphoribosyltransferase [EC:2.4.2.9]
Uracil phosphoribosyltransferase {ECO:0000313|EMBL:AEW03229.1}; EC=2.4.2.9 {ECO:0000313|EMBL:AEW03229.1};; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
Uracil phosphoribosyltransferase n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TQI2_NIAKG
scnpilot_solids1_trim150_scaffold_298_curated_25
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

30747..31832
DNA (1086bp) protein (362aa)
hypothetical protein; K09001 anhydro-N-acetylmuramic acid kinase [EC:2.7.1.170]
hypothetical protein n=1 Tax=Niabella aurantiaca RepID=UPI000374AB8D
Uncharacterized protein {ECO:0000313|EMBL:AEW03230.1}; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
scnpilot_solids1_trim150_scaffold_298_curated_26
Flavobacteriales bacterium BRH_c54, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

32073..32501
DNA (429bp) protein (143aa)
Uncharacterized protein n=1 Tax=Spirosoma linguale (strain ATCC 33905 / DSM 74 / LMG 10896) RepID=D2QIS7_SPILD
Uncharacterized protein {ECO:0000313|EMBL:KJS04016.1}; TaxID=1629721 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales.;" source="Flavobacteriales bacterium BRH_c54.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_298_curated_27
unknown

Not on your lists

32713..33228
DNA (516bp) protein (172aa)

This feature has no annotations

scnpilot_solids1_trim150_scaffold_298_curated_28
GWA2_Bacteroidetes_31_9_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

33503..33709
DNA (207bp) protein (69aa)
Putative uncharacterized protein id=3762947 bin=GWF2_Bacteroidetes_35_48 species=Haliscomenobacter hydrossis genus=Haliscomenobacter taxon_order=Sphingobacteriales taxon_class=Sphingobacteriia phylum=Bacteroidetes tax=GWF2_Bacteroidetes_35_48 organism_group=Bacteroidetes organism_desc=a81
Tax=GWA2_Bacteroidetes_31_9_curated
scnpilot_solids1_trim150_scaffold_298_curated_29
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(33837..35726)
DNA (1890bp) protein (630aa)
Peptidase S15 n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PC58_CHIPD
peptidase S15; K06978
Peptidase S15 {ECO:0000313|EMBL:ACU59441.1}; Flags: Precursor;; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
scnpilot_solids1_trim150_scaffold_298_curated_30
RIFOXYD2_FULL_Sphingobacteria_35_12_curated, Sphingobacteria, Bacteroidetes, Bacteria

Not on your lists

36105..36509
DNA (405bp) protein (135aa)
methylmalonyl-CoA epimerase; K05606 methylmalonyl-CoA/ethylmalonyl-CoA epimerase [EC:5.1.99.1]
Methylmalonyl-CoA epimerase n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TJX1_NIAKG
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
Displaying items 1-30 of 37 in total

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