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scnpilot_solids1_trim150_scaffold_1256_curated_12

Organism: solids_Sphingobacteriales_4

near complete RP 51 / 55 MC: 1 BSCG 51 / 51 ASCG 12 / 38
Location: comp(14792..15349)

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase sigma factor, sigma-70 family n=1 Tax=Pedobacter heparinus (strain ATCC 13125 / DSM 2366 / NCIB 9290) RepID=C6XZ68_PEDHD similarity UNIREF
DB: UNIREF100
  • Identity: 61.2
  • Coverage: 183.0
  • Bit_score: 222
  • Evalue 2.90e-55
sigma-70 family RNA polymerase sigma factor similarity KEGG
DB: KEGG
  • Identity: 61.2
  • Coverage: 183.0
  • Bit_score: 222
  • Evalue 9.20e-56
RNA polymerase sigma factor, sigma-70 family {ECO:0000313|EMBL:ACU02550.1}; TaxID=485917 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter heparinus (strain ATCC 13125 / DSM 2366 / NCIB 9290).;" similarity UNIPROT
DB: UniProtKB
  • Identity: 61.2
  • Coverage: 183.0
  • Bit_score: 222
  • Evalue 4.10e-55

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Taxonomy

Pedobacter heparinus → Pedobacter → Sphingobacteriales → Sphingobacteriia → Bacteroidetes → Bacteria

Sequences

DNA sequence
Length: 558
ATGCACAAGCCAACATATAATACGTTAGATGATAAAGATCTTCTTGAGTTGCTTTGCGCAAATAATACTCAGGCATTAGCTGCTATCTATGACAGATACTGGTCTAAATTATATTTGCAGGCCTATAATGTAATAAGAGACAGGTATATTTCTGAAGATATTGTGCAGGAGATCATTGTGCAATTATGGACGAAGCGGGCCACTATAGAAATCAGGAGTTTAGATGCTTACCTATACACTGCAGTCAGATACCAGGTTTTCAAAGCTATCCGCTCGTATAAAGTAATTGAAAGCCTTAAGATGGAAGAAATTTCAAGTGTGAACGATGCGGATCAGGCGTTGATGAAAAAAGATATTCAAAATCTTCTTGATGAAGGTATATCCCAGCTTCCTGTGAAGTGCAGAGAGGTATTTAAATTAAGTCGCAGAGATCATCTTAGTACTAAAGAAATAGCTGTCCGTTTGGGCATTGCGCCAAAAACTGTGGAGAACCAGCTAACCATTGCGTTAAAGCGTCTTAAATCTATAATAAGCCAGTTGTTATTTTTAATTTTTTAG
PROTEIN sequence
Length: 186
MHKPTYNTLDDKDLLELLCANNTQALAAIYDRYWSKLYLQAYNVIRDRYISEDIVQEIIVQLWTKRATIEIRSLDAYLYTAVRYQVFKAIRSYKVIESLKMEEISSVNDADQALMKKDIQNLLDEGISQLPVKCREVFKLSRRDHLSTKEIAVRLGIAPKTVENQLTIALKRLKSIISQLLFLIF*