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scnpilot_solids1_trim150_scaffold_2291_curated

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Displaying 11 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids1_trim150_scaffold_2291_curated_1
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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1..1512
DNA (1512bp) protein (504aa)
1-deoxy-D-xylulose-5-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00315, ECO:0000256|SAAS:SAAS00085897}; EC=2.2.1.7 {ECO:0000256|HAMAP-Rule:MF_00315, ECO:0000256|SAAS:SAAS00085897};; 1-deoxyxylulose-5-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00315}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
1-deoxy-D-xylulose-5-phosphate synthase; K01662 1-deoxy-D-xylulose-5-phosphate synthase [EC:2.2.1.7]
1-deoxy-D-xylulose-5-phosphate synthase n=1 Tax=Sphingopyxis sp. MC1 RepID=N9WEX9_9SPHN
scnpilot_solids1_trim150_scaffold_2291_curated_2
R_Erythrobacter_63_10, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1531..1800)
DNA (270bp) protein (90aa)
Addiction module toxin, RelE/StbE family n=3 Tax=Mobiluncus mulieris RepID=C2KRH2_9ACTO
addiction module toxin, RelE/StbE family
Tax=RIFCSPHIGHO2_12_FULL_Erythrobacter_63_10_curated
scnpilot_solids1_trim150_scaffold_2291_curated_3
R_Erythrobacter_63_10, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1784..2002)
DNA (219bp) protein (73aa)
Putative toxin-antitoxin system, antitoxin component, ribbon-helix-helix domain protein n=1 Tax=delta proteobacterium NaphS2 RepID=D8F3W9_9DELT
CopG domain-containing protein DNA-binding domain-containing protein
Tax=RIFCSPHIGHO2_12_FULL_Erythrobacter_63_10_curated
scnpilot_solids1_trim150_scaffold_2291_curated_4
BJP_08E140C01_10KDA_Sphingopyxis_64_55, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2074..2493)
DNA (420bp) protein (140aa)
Uncharacterized protein n=1 Tax=Sphingopyxis sp. MC1 RepID=N9WE24_9SPHN
hypothetical protein
Tax=BJP_08E140C01_10KDA_Sphingopyxis_64_55
scnpilot_solids1_trim150_scaffold_2291_curated_5
BJP_08E140C01_10KDA_Sphingopyxis_64_55, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2521..3054)
DNA (534bp) protein (178aa)
lipoprotein signal peptidase; K03101 signal peptidase II [EC:3.4.23.36]
Lipoprotein signal peptidase n=1 Tax=Sphingopyxis alaskensis (strain DSM 13593 / LMG 18877 / RB2256) RepID=LSPA_SPHAL
Tax=BJP_08E140C01_10KDA_Sphingopyxis_64_55
scnpilot_solids1_trim150_scaffold_2291_curated_6
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3051..4994)
DNA (1944bp) protein (648aa)
Isoleucine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_02002, ECO:0000256|SAAS:SAAS00106059}; EC=6.1.1.5 {ECO:0000256|HAMAP-Rule:MF_02002, ECO:0000256|SAAS:SAAS00106059};; Isoleucyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_02002}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
ileS; isoleucyl-tRNA synthetase; K01870 isoleucyl-tRNA synthetase [EC:6.1.1.5]
Isoleucine--tRNA ligase n=1 Tax=Sphingopyxis sp. MC1 RepID=N9WEX3_9SPHN
scnpilot_solids1_trim150_scaffold_2291_curated_7
RBG_19FT_COMBO_Aminicenantes_65_30_curated, Aminicenantes, Bacteria

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5145..5975
DNA (831bp) protein (277aa)
Uncharacterized protein id=24496825 bin=RBG_19FT_COMBO_Aminicenantes_65_30 species=Cardiobacterium valvarum genus=Cardiobacterium taxon_order=Cardiobacteriales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=RBG_19FT_COMBO_Aminicenantes_65_30 organism_group=OP8 (Aminicenantes) organism_desc=Curation Candidate
Tax=RBG_19FT_COMBO_Aminicenantes_65_30_curated
scnpilot_solids1_trim150_scaffold_2291_curated_8
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(6195..6485)
DNA (291bp) protein (97aa)
Excinuclease ABC subunit C n=1 Tax=Sphingopyxis sp. MC1 RepID=N9UU41_9SPHN
Excinuclease ABC subunit C {ECO:0000313|EMBL:ENY82000.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
excinuclease ABC subunit C; K07461 putative endonuclease
scnpilot_solids1_trim150_scaffold_2291_curated_9
Sphingopyxis alaskensis, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(6533..7462)
DNA (930bp) protein (310aa)
riboflavin biosynthesis protein RibF; K11753 riboflavin kinase / FMN adenylyltransferase [EC:2.7.1.26 2.7.7.2]
Riboflavin biosynthesis protein {ECO:0000256|PIRNR:PIRNR004491}; EC=2.7.1.26 {ECO:0000256|PIRNR:PIRNR004491};; EC=2.7.7.2 {ECO:0000256|PIRNR:PIRNR004491};; TaxID=317655 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis alaskensis (strain DSM 13593 / LMG 18877 / RB2256); (Sphingomonas alaskensis).;"
FMN adenylyltransferase / riboflavin kinase n=1 Tax=Sphingopyxis alaskensis (strain DSM 13593 / LMG 18877 / RB2256) RepID=Q1GQK5_SPHAL
scnpilot_solids1_trim150_scaffold_2291_curated_10
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(7578..8141)
DNA (564bp) protein (188aa)
Peptidase M19 n=1 Tax=Sphingopyxis sp. MC1 RepID=N9W375_9SPHN
Peptidase M19 {ECO:0000313|EMBL:ENY81997.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
peptidase M19
scnpilot_solids1_trim150_scaffold_2291_curated_11
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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8557..8829
DNA (273bp) protein (91aa)
beta-lactamase n=1 Tax=Afipia birgiae RepID=UPI0002F0E8BE
Uncharacterized protein {ECO:0000313|EMBL:EKS36095.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
hypothetical protein
Displaying 11 items

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