ggKbase home page

scnpilot_solids1_trim150_scaffold_500_curated

Search features with annotation key words

Displaying items 1-30 of 31 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids1_trim150_scaffold_500_curated_1
Xanthomonas axonopodis, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2..2212)
DNA (2211bp) protein (737aa)
pbpC; penicillin-binding protein 1C; K05367 penicillin-binding protein 1C [EC:2.4.1.-]
penicillin-binding protein 1C n=1 Tax=Stenotrophomonas maltophilia RepID=UPI00037BC175
Penicillin-binding protein {ECO:0000313|EMBL:KHD65045.1}; TaxID=317013 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas axonopodis pv. phaseoli.;"
scnpilot_solids1_trim150_scaffold_500_curated_2
Xanthomonas sacchari, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2366..7285)
DNA (4920bp) protein (1640aa)
hypothetical protein n=1 Tax=Stenotrophomonas maltophilia RepID=UPI0003792B7B
Uncharacterized protein {ECO:0000313|EMBL:AJC45623.1}; TaxID=56458 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas sacchari.;"
alpha-2-macroglobulin domain-containing protein; K06894
scnpilot_solids1_trim150_scaffold_500_curated_3
Stenotrophomonas rhizophila, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7386..8573)
DNA (1188bp) protein (396aa)
3-methylitaconate isomerase n=1 Tax=Pseudoxanthomonas sp. GW2 RepID=UPI0002E239CE
3-methylitaconate isomerase {ECO:0000313|EMBL:AHY58112.1}; TaxID=216778 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas rhizophila.;"
AcnD-accessory protein PrpF; K09788 hypothetical protein
scnpilot_solids1_trim150_scaffold_500_curated_4
Stenotrophomonas maltophilia, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8625..11243)
DNA (2619bp) protein (873aa)
acnA; aconitate hydratase (EC:4.2.1.3); K01681 aconitate hydratase 1 [EC:4.2.1.3]
2-methylisocitrate dehydratase n=1 Tax=Stenotrophomonas maltophilia AU12-09 RepID=M5TZ21_STEMA
2-methylisocitrate dehydratase {ECO:0000313|EMBL:EMI48978.1}; TaxID=1235458 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas; Stenotrophomonas maltophilia group.;" source="Stenotrophomonas maltophilia AU12-09.;"
scnpilot_solids1_trim150_scaffold_500_curated_5
Stenotrophomonas rhizophila, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11398..12558)
DNA (1161bp) protein (387aa)
methylcitrate synthase (EC:2.3.3.5); K01659 2-methylcitrate synthase [EC:2.3.3.5]
methylcitrate synthase n=1 Tax=Stenotrophomonas maltophilia RepID=UPI0002DACC95
Citrate synthase {ECO:0000256|PIRNR:PIRNR001369}; TaxID=216778 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas rhizophila.;"
scnpilot_solids1_trim150_scaffold_500_curated_6
Xanthomonas albilineans, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12584..13183)
DNA (600bp) protein (200aa)
cyclic nucleotide-binding protein n=1 Tax=Xanthomonas sp. SHU308 RepID=UPI00037675BE
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBA15157.1}; TaxID=380358 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas albilineans (strain GPE PC73 / CFBP 7063).;"
scnpilot_solids1_trim150_scaffold_500_curated_7
Stenotrophomonas rhizophila, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13215..14102)
DNA (888bp) protein (296aa)
Methylisocitrate lyase {ECO:0000256|RuleBase:RU361121}; EC=4.1.3.30 {ECO:0000256|RuleBase:RU361121};; TaxID=216778 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas rhizophila.;"
methylisocitrate lyase; K03417 methylisocitrate lyase [EC:4.1.3.30]
2-methylisocitrate lyase n=1 Tax=Stenotrophomonas maltophilia RepID=UPI00035EF1D1
scnpilot_solids1_trim150_scaffold_500_curated_8
Xanthomonas translucens, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14216..15439
DNA (1224bp) protein (408aa)
citrate synthase; K01647 citrate synthase [EC:2.3.3.1]
Citrate synthase n=1 Tax=Xanthomonas translucens DAR61454 RepID=L7GV96_XANCT
Citrate synthase {ECO:0000313|EMBL:ELQ09785.1}; TaxID=1205753 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas translucens DAR61454.;"
scnpilot_solids1_trim150_scaffold_500_curated_9
Stenotrophomonas rhizophila, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15553..16533
DNA (981bp) protein (327aa)
metallo beta-lactamase n=1 Tax=Stenotrophomonas maltophilia RepID=UPI00037D9F9D
Uncharacterized protein {ECO:0000313|EMBL:AHY57139.1}; TaxID=216778 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas rhizophila.;"
beta-lactamase-like protein
scnpilot_solids1_trim150_scaffold_500_curated_10
Xanthomonas translucens, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16669..17460)
DNA (792bp) protein (264aa)
Periplasmic binding protein (Fragment) n=1 Tax=Xanthomonas translucens DAR61454 RepID=L7G6J4_XANCT
Periplasmic binding protein {ECO:0000313|EMBL:ELQ01605.1}; Flags: Fragment;; TaxID=1205753 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas translucens DAR61454.;"
periplasmic binding protein; K02016 iron complex transport system substrate-binding protein
scnpilot_solids1_trim150_scaffold_500_curated_11
Stenotrophomonas maltophilia, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17457..17822)
DNA (366bp) protein (122aa)
Uncharacterized protein n=1 Tax=Stenotrophomonas maltophilia JV3 RepID=G0JZI8_STEMA
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEM52378.1}; TaxID=868597 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas; Stenotrophomonas maltophilia group.;" source="Stenotrophomonas maltophilia JV3.;"
scnpilot_solids1_trim150_scaffold_500_curated_12
Stenotrophomonas maltophilia, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17819..18418)
DNA (600bp) protein (200aa)
Pyridoxine/pyridoxamine 5'-phosphate oxidase {ECO:0000256|HAMAP-Rule:MF_01629}; EC=1.4.3.5 {ECO:0000256|HAMAP-Rule:MF_01629};; PNP/PMP oxidase {ECO:0000256|HAMAP-Rule:MF_01629}; Pyridoxal 5'-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_01629}; TaxID=1333853 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas; Stenotrophomonas maltophilia group.;" source="Stenotrophomonas maltophilia MF89.;"
pyridoxine/pyridoxamine 5'-phosphate oxidase (EC:1.4.3.5); K00275 pyridoxamine 5'-phosphate oxidase [EC:1.4.3.5]
pyridoxamine 5''''-phosphate oxidase n=1 Tax=Pseudomonas geniculata RepID=UPI000299FCD5
scnpilot_solids1_trim150_scaffold_500_curated_13
Stenotrophomonas maltophilia, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18461..19276
DNA (816bp) protein (272aa)
hypothetical protein; K15918 D-glycerate 3-kinase [EC:2.7.1.31]
Uncharacterized protein n=1 Tax=Stenotrophomonas maltophilia (strain R551-3) RepID=B4SSA1_STRM5
Uncharacterized protein {ECO:0000313|EMBL:ACF52733.1}; TaxID=391008 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas; Stenotrophomonas maltophilia group.;" source="Stenotrophomonas maltophilia (strain R551-3).;"
scnpilot_solids1_trim150_scaffold_500_curated_14
Stenotrophomonas rhizophila, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19283..19486)
DNA (204bp) protein (68aa)
hypothetical protein n=1 Tax=Stenotrophomonas maltophilia RepID=UPI0002D806C1
Uncharacterized protein {ECO:0000313|EMBL:AHY58102.1}; TaxID=216778 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas rhizophila.;"
hypothetical protein; K09165 hypothetical protein
scnpilot_solids1_trim150_scaffold_500_curated_15
Stenotrophomonas maltophilia, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19585..20127
DNA (543bp) protein (181aa)
Shikimate kinase {ECO:0000256|HAMAP-Rule:MF_00109}; Short=SK {ECO:0000256|HAMAP-Rule:MF_00109};; EC=2.7.1.71 {ECO:0000256|HAMAP-Rule:MF_00109};; TaxID=1333853 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas; Stenotrophomonas maltophilia group.;" source="Stenotrophomonas maltophilia MF89.;"
aroK; shikimate kinase (EC:2.7.1.71); K00891 shikimate kinase [EC:2.7.1.71]
shikimate kinase n=1 Tax=Xanthomonadaceae RepID=UPI00029B4065
scnpilot_solids1_trim150_scaffold_500_curated_16
Stenotrophomonas rhizophila, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20124..21233
DNA (1110bp) protein (370aa)
3-dehydroquinate synthase {ECO:0000256|HAMAP-Rule:MF_00110, ECO:0000256|SAAS:SAAS00210858}; EC=4.2.3.4 {ECO:0000256|HAMAP-Rule:MF_00110, ECO:0000256|SAAS:SAAS00210855};; TaxID=216778 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas rhizophila.;"
aroB; 3-dehydroquinate synthase; K01735 3-dehydroquinate synthase [EC:4.2.3.4]
3-dehydroquinate synthase n=1 Tax=Stenotrophomonas maltophilia RepID=UPI00030ED554
scnpilot_solids1_trim150_scaffold_500_curated_17
Xanthomonas sacchari, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21305..21556
DNA (252bp) protein (84aa)
hypothetical protein n=1 Tax=Xanthomonas RepID=UPI00026315F9
Uncharacterized protein {ECO:0000313|EMBL:AJC48002.1}; TaxID=56458 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas sacchari.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_500_curated_18
Stenotrophomonas rhizophila, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21616..22689
DNA (1074bp) protein (358aa)
Uroporphyrinogen decarboxylase {ECO:0000256|HAMAP-Rule:MF_00218, ECO:0000256|RuleBase:RU000554}; Short=UPD {ECO:0000256|HAMAP-Rule:MF_00218};; Short=URO-D {ECO:0000256|HAMAP-Rule:MF_00218};; EC=4.1.1.37 {ECO:0000256|HAMAP-Rule:MF_00218, ECO:0000256|RuleBase:RU000554};; TaxID=216778 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas rhizophila.;"
hemE; uroporphyrinogen decarboxylase (EC:4.1.1.37); K01599 uroporphyrinogen decarboxylase [EC:4.1.1.37]
uroporphyrinogen decarboxylase n=1 Tax=Stenotrophomonas maltophilia RepID=UPI0002E28DF8
scnpilot_solids1_trim150_scaffold_500_curated_19
Xanthomonas sacchari, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22823..24244
DNA (1422bp) protein (474aa)
MFS transporter n=1 Tax=Xanthomonas RepID=UPI00036F1495
MFS transporter {ECO:0000313|EMBL:AJC48006.1}; TaxID=56458 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas sacchari.;"
MFS transporter
scnpilot_solids1_trim150_scaffold_500_curated_20
Xanthomonas translucens, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24245..27802)
DNA (3558bp) protein (1186aa)
histidine kinase n=1 Tax=Xanthomonas sacchari RepID=UPI00026315FC
Two component system sensor-response regulator hybrid protein {ECO:0000313|EMBL:ELQ01616.1}; TaxID=1205753 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas translucens DAR61454.;"
two component system sensor-response regulator hybrid protein
scnpilot_solids1_trim150_scaffold_500_curated_21
Stenotrophomonas maltophilia, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28135..28815
DNA (681bp) protein (227aa)
hypothetical protein n=1 Tax=Stenotrophomonas maltophilia RepID=UPI0002FB1B8B
Stenotrophomonas maltophilia strain ZBG7B contig_29, whole genome shotgun sequence {ECO:0000313|EMBL:KIP86422.1}; TaxID=40324 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas; Stenotrophomonas maltophilia group.;" source="Stenotrophomonas maltophilia (Pseudomonas maltophilia) (Xanthomonas; maltophilia).;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_500_curated_22
Stenotrophomonas sp. RIT309, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28812..29390
DNA (579bp) protein (193aa)
cytochrome B561 n=1 Tax=Stenotrophomonas maltophilia RepID=UPI0002F37483
Cytochrome b561 {ECO:0000313|EMBL:EZP44922.1}; TaxID=1470590 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas sp. RIT309.;"
Cytochrome B561
scnpilot_solids1_trim150_scaffold_500_curated_23
Stenotrophomonas maltophilia, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29387..29953
DNA (567bp) protein (189aa)
Uncharacterized protein n=2 Tax=Stenotrophomonas maltophilia RepID=T5L8M0_STEMA
YciI family periplasmic protein {ECO:0000313|EMBL:BAO21241.1}; TaxID=40324 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas; Stenotrophomonas maltophilia group.;" source="Stenotrophomonas maltophilia (Pseudomonas maltophilia) (Xanthomonas; maltophilia).;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_500_curated_24
unknown

Not on your lists

comp(29978..30448)
DNA (471bp) protein (157aa)

This feature has no annotations

scnpilot_solids1_trim150_scaffold_500_curated_25
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30445..30669)
DNA (225bp) protein (75aa)
glutaredoxin n=1 Tax=Xanthomonas sacchari RepID=UPI0002631601
hypothetical protein
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
scnpilot_solids1_trim150_scaffold_500_curated_26
Xanthomonas sacchari, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30768..32150
DNA (1383bp) protein (461aa)
hypothetical protein; K01752 L-serine dehydratase [EC:4.3.1.17]
serine dehydratase n=1 Tax=Xanthomonas sp. SHU308 RepID=UPI0003796229
Serine dehydratase {ECO:0000313|EMBL:AJC44549.1}; TaxID=56458 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas sacchari.;"
scnpilot_solids1_trim150_scaffold_500_curated_27
Pseudoxanthomonas spadix, Pseudoxanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

32218..35325
DNA (3108bp) protein (1036aa)
Two-component system sensor-response regulator hybrid protein n=1 Tax=Pseudoxanthomonas spadix (strain BD-a59) RepID=G7USR2_PSEUP
two-component system sensor-response regulator hybrid protein
Two-component system sensor-response regulator hybrid protein {ECO:0000313|EMBL:AER57313.1}; TaxID=1045855 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Pseudoxanthomonas.;" source="Pseudoxanthomonas spadix (strain BD-a59).;"
scnpilot_solids1_trim150_scaffold_500_curated_28
Herbaspirillum sp. CF444, Herbaspirillum, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

35430..36299
DNA (870bp) protein (290aa)
hypothetical protein n=1 Tax=Methylobacterium sp. MB200 RepID=UPI000373F72A
Uncharacterized protein {ECO:0000313|EMBL:EJL87531.1}; TaxID=1144319 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Herbaspirillum.;" source="Herbaspirillum sp. CF444.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_500_curated_29
Xanthomonas sacchari, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(36318..37382)
DNA (1065bp) protein (355aa)
Homoserine dehydrogenase {ECO:0000256|RuleBase:RU000579}; EC=1.1.1.3 {ECO:0000256|RuleBase:RU000579};; TaxID=56458 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas sacchari.;"
Homoserine dehydrogenase (EC:1.1.1.3); K00003 homoserine dehydrogenase [EC:1.1.1.3]
homoserine dehydrogenase n=1 Tax=Xanthomonas sacchari RepID=UPI0002631606
scnpilot_solids1_trim150_scaffold_500_curated_30
Stenotrophomonas rhizophila, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(37379..38623)
DNA (1245bp) protein (415aa)
Cystathionine gamma-synthase {ECO:0000313|EMBL:AHY58085.1}; EC=2.5.1.48 {ECO:0000313|EMBL:AHY58085.1};; TaxID=216778 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas rhizophila.;"
metC; cystathionine beta-lyases/cystathionine gamma-synthases protein; K01739 cystathionine gamma-synthase [EC:2.5.1.48]
cystathionine gamma-synthase n=1 Tax=Stenotrophomonas maltophilia RepID=UPI0002E41D1D
Displaying items 1-30 of 31 in total

View Taxonomy