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scnpilot_solids1_trim150_scaffold_174_curated

Search features with annotation key words

Displaying items 1-30 of 52 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids1_trim150_scaffold_174_curated_1
Xanthomonas campestris, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(79..1626)
DNA (1548bp) protein (516aa)
hypothetical protein n=1 Tax=Xanthomonas sp. M97 RepID=UPI0003A328B5
Putative exported protein {ECO:0000313|EMBL:CEM57360.1}; TaxID=340 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas campestris pv. campestris.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_174_curated_2
Stenotrophomonas sp. SKA14, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1673..3835)
DNA (2163bp) protein (721aa)
RelA/SpoT family protein (EC:2.7.6.5); K00951 GTP pyrophosphokinase [EC:2.7.6.5]
RelA/SpoT family protein n=1 Tax=Stenotrophomonas sp. SKA14 RepID=B8L6G2_9GAMM
RelA/SpoT family protein {ECO:0000313|EMBL:EED38864.1}; TaxID=391601 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas sp. SKA14.;"
scnpilot_solids1_trim150_scaffold_174_curated_3
Stenotrophomonas sp. RIT309, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3899..4411
DNA (513bp) protein (171aa)
hypothetical protein n=1 Tax=Xanthomonadaceae RepID=UPI00029B47A1
Putative secreted protein {ECO:0000313|EMBL:EZP47599.1}; TaxID=1470590 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas sp. RIT309.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_174_curated_4
Stenotrophomonas maltophilia, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4425..5036
DNA (612bp) protein (204aa)
Uncharacterized protein n=1 Tax=Stenotrophomonas maltophilia EPM1 RepID=M3G2I0_STEMA
Uncharacterized protein {ECO:0000313|EMBL:EJP76808.1}; TaxID=1183154 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas; Stenotrophomonas maltophilia group.;" source="Stenotrophomonas maltophilia Ab55555.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_174_curated_5
Xanthomonas campestris, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5079..9242)
DNA (4164bp) protein (1388aa)
ATP dependent RNA helicase; K03578 ATP-dependent helicase HrpA [EC:3.6.4.13]
ATP dependent RNA helicase n=2 Tax=Xanthomonas campestris pv. campestris RepID=Q4UXI9_XANC8
Strain LMCP11 contig_2, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ29838.1}; TaxID=339 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas campestris.;"
scnpilot_solids1_trim150_scaffold_174_curated_6
Stenotrophomonas maltophilia, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9331..9879
DNA (549bp) protein (183aa)
Ferritin Dps family protein n=2 Tax=Stenotrophomonas maltophilia RepID=B4ST10_STRM5
ferritin Dps family protein; K04047 starvation-inducible DNA-binding protein
Ferritin Dps family protein {ECO:0000313|EMBL:ACF52801.1}; TaxID=391008 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas; Stenotrophomonas maltophilia group.;" source="Stenotrophomonas maltophilia (strain R551-3).;"
scnpilot_solids1_trim150_scaffold_174_curated_7
Stenotrophomonas maltophilia, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10329..12134
DNA (1806bp) protein (602aa)
ATP-dependent DNA helicase RecQ; K03654 ATP-dependent DNA helicase RecQ [EC:3.6.4.12]
ATP-dependent DNA helicase RecQ n=1 Tax=Stenotrophomonas maltophilia AU12-09 RepID=M5TIQ5_STEMA
ATP-dependent DNA helicase RecQ {ECO:0000313|EMBL:EMI49052.1}; TaxID=1235458 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas; Stenotrophomonas maltophilia group.;" source="Stenotrophomonas maltophilia AU12-09.;"
scnpilot_solids1_trim150_scaffold_174_curated_8
Pseudoxanthomonas suwonensis, Pseudoxanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12142..12576)
DNA (435bp) protein (145aa)
Uncharacterized protein {ECO:0000313|EMBL:AKC87484.1}; TaxID=314722 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Pseudoxanthomonas.;" source="Pseudoxanthomonas suwonensis.;"
scnpilot_solids1_trim150_scaffold_174_curated_9
unknown

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12964..15015
DNA (2052bp) protein (684aa)

This feature has no annotations

scnpilot_solids1_trim150_scaffold_174_curated_10
GWF1_Xanthomonadales_69_6_curated, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(14901..15599)
DNA (699bp) protein (233aa)
RNA polymerase, sigma-24 subunit, ECF subfamily id=2862880 bin=GWF1_Xanthomonadales_69_6 species=Candidatus Solibacter usitatus genus=Candidatus Solibacter taxon_order=Solibacterales taxon_class=Solibacteres phylum=Acidobacteria tax=GWF1_Xanthomonadales_69_6 organism_group=Gammaproteobacteria
DNA-directed RNA polymerase specialized sigma subunit sigma24-like protein
Tax=GWF1_Xanthomonadales_69_6_curated
scnpilot_solids1_trim150_scaffold_174_curated_11
Xanthomonas fuscans, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15828..16493)
DNA (666bp) protein (222aa)
7-cyano-7-deazaguanine synthase {ECO:0000256|HAMAP-Rule:MF_01633, ECO:0000256|SAAS:SAAS00195886}; EC=6.3.4.20 {ECO:0000256|HAMAP-Rule:MF_01633, ECO:0000256|SAAS:SAAS00029421};; 7-cyano-7-carbaguanine synthase {ECO:0000256|HAMAP-Rule:MF_01633}; PreQ(0) synthase {ECO:0000256|HAMAP-Rule:MF_01633}; Queuosine biosynthesis protein QueC {ECO:0000256|HAMAP-Rule:MF_01633}; TaxID=427081 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas fuscan
hypothetical protein n=1 Tax=Xanthomonas arboricola RepID=UPI0002FC400F
ATPase; K06920 queuosine biosynthesis protein QueC
scnpilot_solids1_trim150_scaffold_174_curated_12
Stenotrophomonas rhizophila, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16573..17274)
DNA (702bp) protein (234aa)
7-carboxy-7-deazaguanine synthase {ECO:0000256|HAMAP-Rule:MF_00917}; Short=CDG synthase {ECO:0000256|HAMAP-Rule:MF_00917};; EC=4.3.99.3 {ECO:0000256|HAMAP-Rule:MF_00917};; Queuosine biosynthesis protein QueE {ECO:0000256|HAMAP-Rule:MF_00917}; TaxID=216778 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas rhizophila.;"
7-carboxy-7-deazaguanine synthase n=1 Tax=Stenotrophomonas maltophilia JV3 RepID=G0K061_STEMA
radical SAM domain-containing protein; K10026 queuosine biosynthesis protein QueE
scnpilot_solids1_trim150_scaffold_174_curated_13
Stenotrophomonas rhizophila, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17370..18164)
DNA (795bp) protein (265aa)
Kinesin light chain n=1 Tax=Xanthomonas translucens pv. translucens DSM 18974 RepID=L0SYD1_XANCT
Uncharacterized protein {ECO:0000313|EMBL:AHY58004.1}; TaxID=216778 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas rhizophila.;"
TPR repeat containing exported protein Putative periplasmic protein contains a protein prenylyltransferase domain
scnpilot_solids1_trim150_scaffold_174_curated_14
Stenotrophomonas sp. SKA14, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18168..18686)
DNA (519bp) protein (173aa)
Outer membrane lipoprotein omp16 n=1 Tax=Stenotrophomonas maltophilia D457 RepID=I0KRY6_STEMA
putative peptidoglycan-associated lipoprotein; K03640 peptidoglycan-associated lipoprotein
PAL family outer membrane lipoprotein {ECO:0000313|EMBL:EED39841.1}; TaxID=391601 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas sp. SKA14.;"
scnpilot_solids1_trim150_scaffold_174_curated_15
Stenotrophomonas rhizophila, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18751..20070)
DNA (1320bp) protein (440aa)
Protein TolB n=1 Tax=Stenotrophomonas sp. SKA14 RepID=B8L6D9_9GAMM
Protein TolB {ECO:0000256|HAMAP-Rule:MF_00671}; Flags: Precursor;; TaxID=216778 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas rhizophila.;"
protein tolB; K03641 TolB protein
scnpilot_solids1_trim150_scaffold_174_curated_16
Stenotrophomonas rhizophila, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20246..21322)
DNA (1077bp) protein (359aa)
membrane protein TolA n=1 Tax=Stenotrophomonas maltophilia RepID=UPI0002EA7DFF
Membrane protein TolA {ECO:0000313|EMBL:AHY58000.1}; TaxID=216778 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas rhizophila.;"
tolA; putative TolA transmembrane protein; K03646 colicin import membrane protein
scnpilot_solids1_trim150_scaffold_174_curated_17
Stenotrophomonas rhizophila, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21312..21740)
DNA (429bp) protein (143aa)
biopolymer transporter TolR n=1 Tax=Stenotrophomonas maltophilia RepID=UPI0002F6DA8E
Biopolymer transporter TolR {ECO:0000313|EMBL:AHY57999.1}; TaxID=216778 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas rhizophila.;"
protein TolR; K03560 biopolymer transport protein TolR
scnpilot_solids1_trim150_scaffold_174_curated_18
Stenotrophomonas rhizophila, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21778..22554)
DNA (777bp) protein (259aa)
protein tolQ n=1 Tax=Stenotrophomonas maltophilia RepID=UPI0003087E74
Colicin transporter {ECO:0000313|EMBL:AHY57998.1}; TaxID=216778 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas rhizophila.;"
tolQ; MotA/TolQ/ExbB proton channel family protein; K03562 biopolymer transport protein TolQ
scnpilot_solids1_trim150_scaffold_174_curated_19
Stenotrophomonas maltophilia, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22565..22993)
DNA (429bp) protein (143aa)
thioesterase; K07107 acyl-CoA thioester hydrolase [EC:3.1.2.-]
thioesterase n=1 Tax=Stenotrophomonas maltophilia RepID=UPI0003714F67
Stenotrophomonas maltophilia strain ZBG7B contig_38, whole genome shotgun sequence {ECO:0000313|EMBL:KIP86112.1}; TaxID=40324 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas; Stenotrophomonas maltophilia group.;" source="Stenotrophomonas maltophilia (Pseudomonas maltophilia) (Xanthomonas; maltophilia).;"
scnpilot_solids1_trim150_scaffold_174_curated_20
Stenotrophomonas maltophilia, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22986..24026)
DNA (1041bp) protein (347aa)
ruvB; Holliday junction DNA helicase RuvB; K03551 holliday junction DNA helicase RuvB [EC:3.6.4.12]
Holliday junction ATP-dependent DNA helicase RuvB {ECO:0000256|HAMAP-Rule:MF_00016}; EC=3.6.4.12 {ECO:0000256|HAMAP-Rule:MF_00016};; TaxID=1163399 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas; Stenotrophomonas maltophilia group.;" source="Stenotrophomonas maltophilia D457.;"
Holliday junction ATP-dependent DNA helicase RuvB n=1 Tax=Stenotrophomonas maltophilia D457 RepID=I0KRZ2_STEMA
scnpilot_solids1_trim150_scaffold_174_curated_21
Stenotrophomonas maltophilia, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24162..26078)
DNA (1917bp) protein (639aa)
Probable potassium transport system protein kup n=1 Tax=Stenotrophomonas maltophilia SKK35 RepID=M5CYX3_STEMA
Probable potassium transport system protein kup {ECO:0000256|HAMAP-Rule:MF_01522}; TaxID=1118156 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas; Stenotrophomonas maltophilia group.;" source="Stenotrophomonas maltophilia SKK35.;"
Low affinity potassium transport system protein kup; K03549 KUP system potassium uptake protein
scnpilot_solids1_trim150_scaffold_174_curated_22
Stenotrophomonas rhizophila, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26115..26750)
DNA (636bp) protein (212aa)
Holliday junction ATP-dependent DNA helicase RuvA {ECO:0000256|HAMAP-Rule:MF_00031, ECO:0000256|SAAS:SAAS00058935}; EC=3.6.4.12 {ECO:0000256|HAMAP-Rule:MF_00031, ECO:0000256|SAAS:SAAS00058896};; TaxID=216778 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas rhizophila.;"
RuvA; holliday junction resolvasome, DNA-binding subunit protein; K03550 holliday junction DNA helicase RuvA [EC:3.6.4.12]
Holliday junction DNA helicase RuvA n=1 Tax=Stenotrophomonas maltophilia RepID=UPI0002FD10D0
scnpilot_solids1_trim150_scaffold_174_curated_23
Stenotrophomonas maltophilia, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26776..27303)
DNA (528bp) protein (176aa)
Crossover junction endodeoxyribonuclease RuvC {ECO:0000256|HAMAP-Rule:MF_00034, ECO:0000256|SAAS:SAAS00106335}; EC=3.1.22.4 {ECO:0000256|HAMAP-Rule:MF_00034, ECO:0000256|SAAS:SAAS00106388};; Holliday junction nuclease RuvC {ECO:0000256|HAMAP-Rule:MF_00034}; Holliday junction resolvase RuvC {ECO:0000256|HAMAP-Rule:MF_00034}; TaxID=40324 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas; Stenotrophomonas maltophilia group.;" source="Stenotrophomonas ma
ruvC; crossover junction endodeoxyribonuclease RuvC; K01159 crossover junction endodeoxyribonuclease RuvC [EC:3.1.22.4]
Holliday junction resolvase n=1 Tax=Stenotrophomonas maltophilia RepID=UPI0002D746A6
scnpilot_solids1_trim150_scaffold_174_curated_24
Xanthomonas sacchari, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27373..28119)
DNA (747bp) protein (249aa)
transcriptional regulator n=1 Tax=Xanthomonas RepID=UPI000263009D
Probable transcriptional regulatory protein SB85_00285 {ECO:0000256|HAMAP-Rule:MF_00693}; TaxID=56458 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas sacchari.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_174_curated_25
Stenotrophomonas rhizophila, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28186..28836)
DNA (651bp) protein (217aa)
hypothetical protein n=1 Tax=Stenotrophomonas maltophilia RepID=UPI00035FB938
Uncharacterized protein {ECO:0000313|EMBL:AHY57991.1}; TaxID=216778 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas rhizophila.;"
alpha/beta hydrolase fold domain-containing protein
scnpilot_solids1_trim150_scaffold_174_curated_26
Lysobacter capsici, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28939..32019)
DNA (3081bp) protein (1027aa)
putative TonB dependent receptor protein n=1 Tax=Xanthomonas sacchari RepID=UPI000262A7A6
Uncharacterized protein {ECO:0000313|EMBL:EYR65404.1}; TaxID=1444315 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter capsici AZ78.;"
putative TonB dependent receptor protein
scnpilot_solids1_trim150_scaffold_174_curated_27
Sphingobium yanoikuyae, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

32177..32701
DNA (525bp) protein (175aa)
RNA polymerase subunit sigma-24 n=1 Tax=alpha proteobacterium LLX12A RepID=UPI000363E9A7
Sigma-70 family RNA polymerase sigma factor {ECO:0000313|EMBL:EKU76810.1}; TaxID=883163 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium yanoikuyae ATCC 51230.;"
ECF subfamily RNA polymerase sigma-24 factor
scnpilot_solids1_trim150_scaffold_174_curated_28
R_Brevundimonas_70_19, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

32698..33705
DNA (1008bp) protein (336aa)
hypothetical protein n=1 Tax=alpha proteobacterium L41A RepID=UPI000366BB98
FecR, iron siderophore sensor protein; K07165 transmembrane sensor
Tax=RIFCSPHIGHO2_01_FULL_Brevundimonas_70_19_curated
scnpilot_solids1_trim150_scaffold_174_curated_29
Pseudoxanthomonas suwonensis, Pseudoxanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(33749..34273)
DNA (525bp) protein (175aa)
GCN5-related N-acetyltransferase n=1 Tax=Pseudoxanthomonas suwonensis (strain 11-1) RepID=E6WQJ5_PSEUU
Acetyltransferase {ECO:0000313|EMBL:AKC87332.1}; TaxID=314722 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Pseudoxanthomonas.;" source="Pseudoxanthomonas suwonensis.;"
GCN5-like N-acetyltransferase
scnpilot_solids1_trim150_scaffold_174_curated_30
Stenotrophomonas maltophilia, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(34281..36038)
DNA (1758bp) protein (586aa)
Aspartyl-tRNA synthetase {ECO:0000313|EMBL:CCP11365.1}; EC=6.1.1.12 {ECO:0000313|EMBL:CCP11365.1};; TaxID=1118156 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas; Stenotrophomonas maltophilia group.;" source="Stenotrophomonas maltophilia SKK35.;"
aspS; aspartyl-tRNA synthetase (EC:6.1.1.12); K01876 aspartyl-tRNA synthetase [EC:6.1.1.12]
aspartyl-tRNA synthetase n=1 Tax=Xanthomonas sp. M97 RepID=UPI0003AAA154
Displaying items 1-30 of 52 in total

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