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scnpilot_solids1_trim150_scaffold_1429_curated

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Displaying 17 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids1_trim150_scaffold_1429_curated_1
Stenotrophomonas maltophilia, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(1..267)
DNA (267bp) protein (89aa)
folB; putative dihydroneopterin aldolase (EC:4.1.2.25); K01633 dihydroneopterin aldolase [EC:4.1.2.25]
Dihydroneopterin aldolase n=1 Tax=Xanthomonas gardneri ATCC 19865 RepID=F0CAY6_9XANT
Stenotrophomonas maltophilia strain ZBG7B contig_31, whole genome shotgun sequence {ECO:0000313|EMBL:KIP86364.1}; TaxID=40324 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas; Stenotrophomonas maltophilia group.;" source="Stenotrophomonas maltophilia (Pseudomonas maltophilia) (Xanthomonas; maltophilia).;"
scnpilot_solids1_trim150_scaffold_1429_curated_2
Xanthomonas fuscans, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(364..1458)
DNA (1095bp) protein (365aa)
tRNA N6-adenosine threonylcarbamoyltransferase {ECO:0000256|HAMAP-Rule:MF_01445, ECO:0000256|SAAS:SAAS00195365}; EC=2.3.1.234 {ECO:0000256|HAMAP-Rule:MF_01445, ECO:0000256|SAAS:SAAS00182339};; N6-L-threonylcarbamoyladenine synthase {ECO:0000256|HAMAP-Rule:MF_01445}; t(6)A37 threonylcarbamoyladenosine biosynthesis protein TsaD {ECO:0000256|HAMAP-Rule:MF_01445}; tRNA threonylcarbamoyladenosine biosynthesis protein TsaD {ECO:0000256|HAMAP-Rule:MF_01445}; TaxID=427082 species="Bacteria; Proteobacteria; Gammapro
gcp; DNA-binding/iron metalloprotein/AP endonuclease; K01409 O-sialoglycoprotein endopeptidase [EC:3.4.24.57]
tRNA N6-adenosine threonylcarbamoyltransferase n=2 Tax=Xanthomonas fuscans subsp. aurantifolii RepID=D4SWV6_9XANT
scnpilot_solids1_trim150_scaffold_1429_curated_3
Stenotrophomonas maltophilia, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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1589..1804
DNA (216bp) protein (72aa)
rpsU; 30S ribosomal protein S21; K02970 small subunit ribosomal protein S21
30S ribosomal protein S21 id=2574242 bin=GWF1_Xanthomonadales_69_6 species=unknown genus=unknown taxon_order=Xanthomonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWF1_Xanthomonadales_69_6 organism_group=Gammaproteobacteria
30S ribosomal protein S21 {ECO:0000256|HAMAP-Rule:MF_00358, ECO:0000256|RuleBase:RU000667}; TaxID=1451188 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas; Stenotrophomonas maltophilia group.;" source="Stenotrophomonas maltophilia M30.;"
scnpilot_solids1_trim150_scaffold_1429_curated_4
Xanthomonas axonopodis, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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1941..2387
DNA (447bp) protein (149aa)
Uncharacterized protein n=10 Tax=Xanthomonas RepID=Q8PFV0_XANAC
Glutamyl-tRNA amidotransferase {ECO:0000313|EMBL:KHD61226.1}; TaxID=317013 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas axonopodis pv. phaseoli.;"
hypothetical protein; K09117 hypothetical protein
scnpilot_solids1_trim150_scaffold_1429_curated_5
Pseudoxanthomonas suwonensis, Pseudoxanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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2410..3363
DNA (954bp) protein (318aa)
Ribonuclease BN n=1 Tax=Xanthomonas fragariae LMG 25863 RepID=R0E4N3_9XANT
BrkB protein {ECO:0000313|EMBL:AKC86534.1}; TaxID=314722 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Pseudoxanthomonas.;" source="Pseudoxanthomonas suwonensis.;"
rbn; multitransmembrane protein
scnpilot_solids1_trim150_scaffold_1429_curated_6
Stenotrophomonas maltophilia, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3421..5154
DNA (1734bp) protein (578aa)
dnaG; DNA primase; K02316 DNA primase [EC:2.7.7.-]
DNA primase {ECO:0000256|HAMAP-Rule:MF_00974, ECO:0000256|PIRNR:PIRNR002811}; EC=2.7.7.- {ECO:0000256|HAMAP-Rule:MF_00974, ECO:0000256|PIRNR:PIRNR002811};; TaxID=522373 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas; Stenotrophomonas maltophilia group.;" source="Stenotrophomonas maltophilia (strain K279a).;"
DNA primase n=1 Tax=Stenotrophomonas maltophilia RepID=UPI0002E11B95
scnpilot_solids1_trim150_scaffold_1429_curated_7
Stenotrophomonas rhizophila, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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5175..5672
DNA (498bp) protein (166aa)
hypothetical protein, partial n=1 Tax=Stenotrophomonas maltophilia RepID=UPI00035D4F8B
Uncharacterized protein {ECO:0000313|EMBL:AHY60572.1}; TaxID=216778 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas rhizophila.;"
beta-lactamase hydrolase-family protein
scnpilot_solids1_trim150_scaffold_1429_curated_8
Stenotrophomonas maltophilia, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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5707..6693
DNA (987bp) protein (329aa)
Membrane protein n=1 Tax=Stenotrophomonas maltophilia MF89 RepID=T5KG57_STEMA
Sodium/bile acid symporter family; K14347 solute carrier family 10 (sodium/bile acid cotransporter), member 7
Membrane protein {ECO:0000313|EMBL:EQM82593.1}; TaxID=1333853 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas; Stenotrophomonas maltophilia group.;" source="Stenotrophomonas maltophilia MF89.;"
scnpilot_solids1_trim150_scaffold_1429_curated_9
Stenotrophomonas rhizophila, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(6758..7651)
DNA (894bp) protein (298aa)
Protoheme IX farnesyltransferase {ECO:0000256|HAMAP-Rule:MF_00154}; EC=2.5.1.- {ECO:0000256|HAMAP-Rule:MF_00154};; Heme B farnesyltransferase {ECO:0000256|HAMAP-Rule:MF_00154}; Heme O synthase {ECO:0000256|HAMAP-Rule:MF_00154}; TaxID=216778 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas rhizophila.;"
coxD; protoheme IX farnesyltransferase; K02301 protoheme IX farnesyltransferase [EC:2.5.1.-]
protoheme IX farnesyltransferase n=1 Tax=Stenotrophomonas maltophilia RepID=UPI0002D87987
scnpilot_solids1_trim150_scaffold_1429_curated_10
Stenotrophomonas rhizophila, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(7656..8819)
DNA (1164bp) protein (388aa)
cytochrome oxidase assembly protein n=1 Tax=Stenotrophomonas maltophilia RepID=UPI0002FB358F
Cytochrome oxidase assembly protein {ECO:0000313|EMBL:AHY60578.1}; TaxID=216778 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas rhizophila.;"
cytochrome oxidase assembly; K02259 cytochrome c oxidase assembly protein subunit 15
scnpilot_solids1_trim150_scaffold_1429_curated_11
Stenotrophomonas rhizophila, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(8831..9406)
DNA (576bp) protein (192aa)
hypothetical protein n=1 Tax=Stenotrophomonas maltophilia RepID=UPI00035F521C
Uncharacterized protein {ECO:0000313|EMBL:AHY60579.1}; TaxID=216778 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas rhizophila.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_1429_curated_12
Stenotrophomonas rhizophila, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9434..10147)
DNA (714bp) protein (238aa)
membrane protein n=1 Tax=Stenotrophomonas maltophilia RepID=UPI0002EAA148
Membrane protein {ECO:0000313|EMBL:AHY60580.1}; TaxID=216778 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas rhizophila.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_1429_curated_13
Stenotrophomonas rhizophila, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10205..10423
DNA (219bp) protein (73aa)
membrane protein n=1 Tax=Stenotrophomonas maltophilia RepID=UPI00031C4C7B
Membrane protein {ECO:0000313|EMBL:AHY60581.1}; TaxID=216778 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas rhizophila.;"
putative transmembrane protein
scnpilot_solids1_trim150_scaffold_1429_curated_14
Stenotrophomonas rhizophila, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(10505..11380)
DNA (876bp) protein (292aa)
cytochromeC oxidase subunit III; K02276 cytochrome c oxidase subunit III [EC:1.9.3.1]
MFS transporter n=1 Tax=Stenotrophomonas maltophilia RepID=UPI000379DFD3
MFS transporter {ECO:0000313|EMBL:AHY60582.1}; TaxID=216778 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas rhizophila.;"
scnpilot_solids1_trim150_scaffold_1429_curated_15
Stenotrophomonas sp. RIT309, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(11402..11989)
DNA (588bp) protein (196aa)
cysteine ABC transporter substrate-binding protein n=1 Tax=Stenotrophomonas maltophilia RepID=UPI0003672D2B
Cytochrome C oxidase assembly protein {ECO:0000313|EMBL:EZP46492.1}; TaxID=1470590 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas sp. RIT309.;"
cytochrome C oxidase assembly protein; K02258 cytochrome c oxidase assembly protein subunit 11
scnpilot_solids1_trim150_scaffold_1429_curated_16
Xanthomonas translucens, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(11986..12120)
DNA (135bp) protein (45aa)
Putative peptide n=1 Tax=Xanthomonas translucens pv. graminis ART-Xtg29 RepID=K8ZF26_XANCT
Putative peptide {ECO:0000313|EMBL:EKU24311.1}; TaxID=1195885 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas translucens pv. graminis ART-Xtg29.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_1429_curated_17
Xanthomonas campestris, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(12132..13154)
DNA (1023bp) protein (341aa)
ctaD; cytochrome C oxidase subunit I; K02274 cytochrome c oxidase subunit I [EC:1.9.3.1]
Cytochrome C oxidase, subunit I {ECO:0000313|EMBL:CDN21035.1}; EC=1.9.3.1 {ECO:0000313|EMBL:CDN21035.1};; TaxID=487899 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas campestris pv. viticola.;"
cytochrome oxidase subunit I n=1 Tax=Xanthomonas oryzae RepID=UPI0003170110
Displaying 17 items

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