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scnpilot_solids1_trim150_scaffold_630_curated

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Displaying 21 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids1_trim150_scaffold_630_curated_1
Lysobacter capsici, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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1..135
DNA (135bp) protein (45aa)
NLP/P60 family protein n=1 Tax=Stenotrophomonas maltophilia D457 RepID=I0KR72_STEMA
Uncharacterized protein {ECO:0000313|EMBL:EYR65900.1}; TaxID=1444315 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter capsici AZ78.;"
NLP/P60 protein
scnpilot_solids1_trim150_scaffold_630_curated_2
Stenotrophomonas sp. RIT309, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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241..987
DNA (747bp) protein (249aa)
cell-wall hydrolase n=1 Tax=Stenotrophomonas maltophilia RepID=UPI0003193107
Outer membrane lipoprotein {ECO:0000313|EMBL:EZP47257.1}; TaxID=1470590 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas sp. RIT309.;"
cell wall-associated hydrolase
scnpilot_solids1_trim150_scaffold_630_curated_3
Lysobacter capsici, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1118..2539)
DNA (1422bp) protein (474aa)
Uncharacterized protein n=1 Tax=Massilia timonae CCUG 45783 RepID=K9DH33_9BURK
Uncharacterized protein {ECO:0000313|EMBL:EYR65896.1}; TaxID=1444315 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter capsici AZ78.;"
Zn-dependent peptidase
scnpilot_solids1_trim150_scaffold_630_curated_4
Lysobacter daejeonensis, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(2550..3917)
DNA (1368bp) protein (456aa)
Ubiquinol-cytochrome-c reductase complex core protein I, mitochondrial precursor, putative (EC:3.4.24.64)
Uncharacterized protein n=1 Tax=Massilia timonae CCUG 45783 RepID=K9DV89_9BURK
Peptidase M16 {ECO:0000313|EMBL:KGM53725.1}; TaxID=1385517 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter daejeonensis GH1-9.;"
scnpilot_solids1_trim150_scaffold_630_curated_5
Stenotrophomonas rhizophila, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(4029..5339)
DNA (1311bp) protein (437aa)
amino acid:proton symporter n=1 Tax=Stenotrophomonas maltophilia RepID=UPI0002E930BF
Amino acid:proton symporter {ECO:0000313|EMBL:AHY58241.1}; TaxID=216778 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas rhizophila.;"
sodium:dicarboxylate symporter
scnpilot_solids1_trim150_scaffold_630_curated_6
Stenotrophomonas rhizophila, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5454..7184
DNA (1731bp) protein (577aa)
phoA; alkaline phosphatase (EC:3.1.3.1); K01077 alkaline phosphatase [EC:3.1.3.1]
alkaline phosphatase n=1 Tax=Stenotrophomonas maltophilia RepID=UPI000300EF4D
Alkaline phosphatase {ECO:0000313|EMBL:AHY58240.1}; TaxID=216778 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas rhizophila.;"
scnpilot_solids1_trim150_scaffold_630_curated_7
Xanthomonas arboricola, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(7361..8305)
DNA (945bp) protein (315aa)
Uncharacterized protein {ECO:0000313|EMBL:GAE50316.1}; TaxID=1414836 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas arboricola pv. pruni str. MAFF 311562.;"
scnpilot_solids1_trim150_scaffold_630_curated_8
Xanthomonas campestris, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8453..8737
DNA (285bp) protein (95aa)
tRNA(Ile)-lysidine synthase {ECO:0000256|HAMAP-Rule:MF_01161, ECO:0000256|SAAS:SAAS00043109}; EC=6.3.4.19 {ECO:0000256|HAMAP-Rule:MF_01161, ECO:0000256|SAAS:SAAS00043112};; tRNA(Ile)-2-lysyl-cytidine synthase {ECO:0000256|HAMAP-Rule:MF_01161}; tRNA(Ile)-lysidine synthetase {ECO:0000256|HAMAP-Rule:MF_01161}; TaxID=339 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas campestris.;"
cell cycle protein; K04075 tRNA(Ile)-lysidine synthase [EC:6.3.4.19]
tRNA(Ile)-lysidine synthase n=2 Tax=Xanthomonas campestris pv. campestris RepID=TILS_XANC8
scnpilot_solids1_trim150_scaffold_630_curated_9
Stenotrophomonas rhizophila, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8769..9029
DNA (261bp) protein (87aa)
Exodeoxyribonuclease 7 small subunit {ECO:0000256|HAMAP-Rule:MF_00337, ECO:0000256|SAAS:SAAS00198685}; EC=3.1.11.6 {ECO:0000256|HAMAP-Rule:MF_00337, ECO:0000256|SAAS:SAAS00198686};; Exodeoxyribonuclease VII small subunit {ECO:0000256|HAMAP-Rule:MF_00337}; TaxID=216778 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas rhizophila.;"
xseB; exodeoxyribonuclease VII small subunit; K03602 exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
exodeoxyribonuclease VII small subunit n=1 Tax=Stenotrophomonas maltophilia RepID=UPI0002E66B3C
scnpilot_solids1_trim150_scaffold_630_curated_10
Stenotrophomonas maltophilia, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9019..9897
DNA (879bp) protein (293aa)
geranyltranstransferase (EC:2.5.1.10); K00795 farnesyl diphosphate synthase [EC:2.5.1.1 2.5.1.10]
Geranyltranstransferase {ECO:0000313|EMBL:AEM52246.1}; EC=2.5.1.10 {ECO:0000313|EMBL:AEM52246.1};; TaxID=868597 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas; Stenotrophomonas maltophilia group.;" source="Stenotrophomonas maltophilia JV3.;"
Geranyltranstransferase n=1 Tax=Stenotrophomonas maltophilia JV3 RepID=G0JY77_STEMA
scnpilot_solids1_trim150_scaffold_630_curated_11
GWF1_Xanthomonadales_69_6_curated, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(10004..10375)
DNA (372bp) protein (124aa)
hypothetical protein n=1 Tax=Pseudoxanthomonas sp. GW2 RepID=UPI000300A1BF
hypothetical protein
Tax=GWF1_Xanthomonadales_69_6_curated
scnpilot_solids1_trim150_scaffold_630_curated_12
Xanthomonas campestris, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10470..11837)
DNA (1368bp) protein (456aa)
peptidase C69 n=1 Tax=Stenotrophomonas maltophilia RepID=UPI0003047FBA
pmbA; PmbA protein; K03592 PmbA protein
PmbA protein {ECO:0000313|EMBL:AAM41876.1}; TaxID=190485 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas campestris pv. campestris (strain ATCC 33913 / DSM 3586 /; NCPPB 528 / LMG 568 / P 25).;"
scnpilot_solids1_trim150_scaffold_630_curated_13
Stenotrophomonas maltophilia, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12022..12609
DNA (588bp) protein (196aa)
UPF0307 protein EPM1_2442 n=1 Tax=Stenotrophomonas maltophilia EPM1 RepID=M3G8V4_STEMA
hypothetical protein; K09889 ribosome-associated protein
UPF0307 protein Smlt3470 {ECO:0000255|HAMAP-Rule:MF_00765}; TaxID=522373 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas; Stenotrophomonas maltophilia group.;" source="Stenotrophomonas maltophilia (strain K279a).;"
scnpilot_solids1_trim150_scaffold_630_curated_14
Desulfomicrobium baculatum, Desulfomicrobium, Desulfovibrionales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12611..13345
DNA (735bp) protein (245aa)
Uncharacterized protein n=1 Tax=Desulfomicrobium baculatum (strain DSM 4028 / VKM B-1378) RepID=C7LNX6_DESBD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACU90200.1}; Flags: Precursor;; TaxID=525897 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfovibrionales; Desulfomicrobiaceae; Desulfomicrobium.;" source="Desulfomicrobium baculatum (strain DSM 4028 / VKM B-1378); (Desulfovibrio baculatus).;"
scnpilot_solids1_trim150_scaffold_630_curated_15
Stenotrophomonas maltophilia, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13380..14840)
DNA (1461bp) protein (487aa)
protease TldD n=1 Tax=Stenotrophomonas maltophilia RepID=UPI0002FFA6F1
peptidase U62 modulator of DNA gyrase; K03568 TldD protein
Protein tldD homolog {ECO:0000313|EMBL:CCP17705.1}; TaxID=1118157 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas; Stenotrophomonas maltophilia group.;" source="Stenotrophomonas maltophilia RA8.;"
scnpilot_solids1_trim150_scaffold_630_curated_16
Stenotrophomonas rhizophila, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14893..18714)
DNA (3822bp) protein (1274aa)
membrane protein n=1 Tax=Stenotrophomonas maltophilia RepID=UPI0002D60716
Membrane protein {ECO:0000313|EMBL:AHY58231.1}; TaxID=216778 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas rhizophila.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_630_curated_17
Stenotrophomonas maltophilia, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18867..20357)
DNA (1491bp) protein (497aa)
rnG; ribonuclease G (EC:3.1.4.-); K08301 ribonuclease G [EC:3.1.26.-]
Ribonuclease G n=1 Tax=Stenotrophomonas maltophilia MF89 RepID=T5K703_STEMA
Ribonuclease G {ECO:0000313|EMBL:EQM76719.1}; TaxID=1333853 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas; Stenotrophomonas maltophilia group.;" source="Stenotrophomonas maltophilia MF89.;"
scnpilot_solids1_trim150_scaffold_630_curated_18
Xanthomonas translucens, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20362..20937)
DNA (576bp) protein (192aa)
Maf-like protein A989_14134 n=1 Tax=Xanthomonas translucens DAR61454 RepID=L7GGA1_XANCT
Maf-like protein A989_14134 {ECO:0000256|HAMAP-Rule:MF_00528}; TaxID=1205753 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas translucens DAR61454.;"
septum formation protein; K06287 septum formation protein
scnpilot_solids1_trim150_scaffold_630_curated_19
Xanthomonas campestris, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21146..21880
DNA (735bp) protein (245aa)
membrane protein n=1 Tax=Stenotrophomonas maltophilia RepID=UPI00030A14B6
Membrane protein {ECO:0000313|EMBL:KFA10701.1}; TaxID=1094183 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas campestris pv. musacearum NCPPB 2005.;"
outer membrane protein; K09807 hypothetical protein
scnpilot_solids1_trim150_scaffold_630_curated_20
Xanthomonas euvesicatoria, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22087..22749
DNA (663bp) protein (221aa)
cell envelope biogenesis protein TonB n=1 Tax=Xanthomonas sp. M97 RepID=UPI0003B43BC8
TonB-like protein; K03832 periplasmic protein TonB
TonB-like protein {ECO:0000313|EMBL:CAJ24609.1}; TaxID=316273 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas campestris pv. vesicatoria (strain 85-10).;"
scnpilot_solids1_trim150_scaffold_630_curated_21
Lysobacter capsici, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22876..25764
DNA (2889bp) protein (963aa)
TonB dependent receptor protein n=1 Tax=Stenotrophomonas maltophilia RepID=UPI0003153C2A
TonB dependent receptor protein {ECO:0000313|EMBL:EYR66987.1}; TaxID=1444315 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter capsici AZ78.;"
putative TonB dependent receptor protein; K02014 iron complex outermembrane recepter protein
Displaying 21 items

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