ggKbase home page

scnpilot_solids1_trim150_scaffold_393_curated_5

Organism: solids_Stenotrophomonas_1

near complete RP 51 / 55 MC: 4 BSCG 50 / 51 MC: 2 ASCG 12 / 38
Location: comp(17468..18058)

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase sigma-E factor protein n=1 Tax=Herbaspirillum sp. GW103 RepID=I3CPN5_9BURK similarity UNIREF
DB: UNIREF100
  • Identity: 70.4
  • Coverage: 179.0
  • Bit_score: 240
  • Evalue 1.10e-60
RNA polymerase sigma factor {ECO:0000313|EMBL:EOA02068.1}; TaxID=864073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Herbaspirillum.;" source="Herbaspirillum frisingense GSF30.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 69.3
  • Coverage: 179.0
  • Bit_score: 240
  • Evalue 1.50e-60
rpoE; RNA polymerase sigma-E factor protein; K03088 RNA polymerase sigma-70 factor, ECF subfamily similarity KEGG
DB: KEGG
  • Identity: 69.8
  • Coverage: 179.0
  • Bit_score: 237
  • Evalue 2.90e-60

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Herbaspirillum frisingense → Herbaspirillum → Burkholderiales → Betaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 591
ATGACCGCCGCCATCTCCACCACGGGGGCCGGATCTGCAGCCATGGCCGATCCGGTCGAGTCTGCGCTGCGCGTGCTGTTCGAAGCCGGCCTGGGAGGCGATCCCGACGCCTATCGGTGCTTCCTGGATGAACTGAGCGCACGCCTGCGTGCCTTCCTGCGGCGCCGGCTGGGTGGGTCGCCGGATGACGTCGAGGACATCCTGCAGGAGACCCTGCTGGCCATCCACAACAGCCGCCACACCTACCGCAGCGGCCAGCCGCTGACTGCGTGGGTCTATGCCATCGCCCGCTACAAGCTCATGGACTTCCATCGCAGTCACCACCGGCGCGAAGCGCTGAACCTGCCGCTGGAGGCGGCGCAGGACGTGTTCGCGGCCGCCGACACCGAATCGACCCACGCCCGGCACGATATCGGCCAGCTGCTGGAGGCGCTGCCGGACCGGCATCGCCTGCCGATCCTGCACGTCAAGCTCGGCGGCCTGTCGGTCAGCGAAACCGCACGCCTGACCGGCATGTCCGAGTCGGCGGTGAAAGTAGGCATCCACCGCGGCCTGAAGGCGCTGGCCTTGAAAATACGGAGTGCAGCATGA
PROTEIN sequence
Length: 197
MTAAISTTGAGSAAMADPVESALRVLFEAGLGGDPDAYRCFLDELSARLRAFLRRRLGGSPDDVEDILQETLLAIHNSRHTYRSGQPLTAWVYAIARYKLMDFHRSHHRREALNLPLEAAQDVFAAADTESTHARHDIGQLLEALPDRHRLPILHVKLGGLSVSETARLTGMSESAVKVGIHRGLKALALKIRSAA*