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scnpilot_solids1_trim150_scaffold_818_curated

Search features with annotation key words

Displaying 23 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids1_trim150_scaffold_818_curated_1
unknown

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comp(1..177)
DNA (177bp) protein (59aa)
hypothetical protein n=1 Tax=Brachymonas chironomi RepID=UPI000382D317
scnpilot_solids1_trim150_scaffold_818_curated_2
RIFOXYA1_FULL_Xanthomonadales_69_10_curated, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(241..1011)
DNA (771bp) protein (257aa)
Crp/Fnr family transcriptional regulator id=2594430 bin=GWF1_Xanthomonadales_69_6 species=Rhodanobacter thiooxydans genus=Rhodanobacter taxon_order=Xanthomonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWF1_Xanthomonadales_69_6 organism_group=Gammaproteobacteria
cAMP-binding protein
Tax=RIFOXYA1_FULL_Xanthomonadales_69_10_curated
scnpilot_solids1_trim150_scaffold_818_curated_3
Lysobacter concretionis, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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1163..2629
DNA (1467bp) protein (489aa)
cbb3-type cytochrome c oxidase subunit I; K00404 cytochrome c oxidase cbb3-type subunit I [EC:1.9.3.1]
Cbb3-type cytochrome c oxidase subunit I n=1 Tax=Pseudoxanthomonas spadix (strain BD-a59) RepID=G7UUK6_PSEUP
Cbb3-type cytochrome c oxidase subunit I {ECO:0000313|EMBL:KGM51202.1}; TaxID=1122185 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter concretionis Ko07 = DSM 16239.;"
scnpilot_solids1_trim150_scaffold_818_curated_4
Lysobacter daejeonensis, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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2639..3253
DNA (615bp) protein (205aa)
Cbb3-type cytochrome c oxidase subunit II n=1 Tax=Pseudoxanthomonas spadix (strain BD-a59) RepID=G7UUK7_PSEUP
Peptidase S41 {ECO:0000313|EMBL:KGM53548.1}; TaxID=1385517 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter daejeonensis GH1-9.;"
cbb3-type cytochrome c oxidase subunit II; K00405 cytochrome c oxidase cbb3-type subunit II
scnpilot_solids1_trim150_scaffold_818_curated_5
Lysobacter concretionis, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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3373..4356
DNA (984bp) protein (328aa)
cytochrome C oxidase subunit III n=1 Tax=Pseudoxanthomonas sp. GW2 RepID=UPI0002FE1EA8
Cbb3-type cytochrome c oxidase subunit {ECO:0000256|PIRNR:PIRNR000006}; TaxID=1122185 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter concretionis Ko07 = DSM 16239.;"
cytochrome c oxidase cbb3-type subunit III; K00406 cytochrome c oxidase cbb3-type subunit III
scnpilot_solids1_trim150_scaffold_818_curated_6
Pseudoxanthomonas suwonensis, Pseudoxanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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4353..4646
DNA (294bp) protein (98aa)
membrane protein n=1 Tax=Pseudoxanthomonas sp. GW2 RepID=UPI0003623402
Membrane protein {ECO:0000313|EMBL:AKC86394.1}; TaxID=314722 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Pseudoxanthomonas.;" source="Pseudoxanthomonas suwonensis.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_818_curated_7
Lysobacter arseniciresistens, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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4654..6204
DNA (1551bp) protein (517aa)
Cytochrome c oxidase accessory protein CcoG n=1 Tax=Pseudoxanthomonas suwonensis (strain 11-1) PF5_PSEUU">RepID=E6WPF5_PSEUU
(Fe-S)-binding protein {ECO:0000313|EMBL:KGM56842.1}; TaxID=913325 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter arseniciresistens ZS79.;"
cytochrome c oxidase accessory protein CcoG
scnpilot_solids1_trim150_scaffold_818_curated_8
Lysobacter defluvii, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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6270..6782
DNA (513bp) protein (171aa)
FixH n=1 Tax=Pseudoxanthomonas sp. GW2 RepID=UPI0003079183
FixH {ECO:0000313|EMBL:KGO98874.1}; Flags: Fragment;; TaxID=1385515 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter defluvii IMMIB APB-9 = DSM 18482.;"
FixH family protein; K09926 hypothetical protein
scnpilot_solids1_trim150_scaffold_818_curated_9
Lysobacter sp. A03, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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6796..9159
DNA (2364bp) protein (788aa)
NODE_1, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ97568.1}; EC=3.6.3.4 {ECO:0000313|EMBL:KIQ97568.1};; TaxID=1199154 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter sp. A03.;"
ATPase P; K01533 Cu2+-exporting ATPase [EC:3.6.3.4]
ATPase P n=1 Tax=Pseudoxanthomonas spadix (strain BD-a59) RepID=G7UUL3_PSEUP
scnpilot_solids1_trim150_scaffold_818_curated_10
GWF1_Xanthomonadales_69_6_curated, Gammaproteobacteria, Proteobacteria, Bacteria

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9156..9356
DNA (201bp) protein (67aa)
cbb3-type cytochrome oxidase maturation protein
Cytochrome oxidase maturation protein, cbb3-type id=2594423 bin=GWF1_Xanthomonadales_69_6 species=Pseudoxanthomonas suwonensis genus=Pseudoxanthomonas taxon_order=Xanthomonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWF1_Xanthomonadales_69_6 organism_group=Gammaproteobacteria
Tax=GWF1_Xanthomonadales_69_6_curated
scnpilot_solids1_trim150_scaffold_818_curated_11
Lysobacter dokdonensis, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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9346..10068
DNA (723bp) protein (241aa)
hypothetical protein n=1 Tax=Dyella ginsengisoli RepID=UPI000345A2AE
Heavy-metal-associated domain and membrane-bounded cytochrome biogenesis cycZ-like domain, membrane copper tolerance protein {ECO:0000313|EMBL:KGQ20031.1}; TaxID=1300345 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter dokdonensis DS-58.;"
hypothetical protein; K09792 hypothetical protein
scnpilot_solids1_trim150_scaffold_818_curated_12
Xanthomonas axonopodis, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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10047..11474
DNA (1428bp) protein (476aa)
diguanylate cyclase n=1 Tax=Stenotrophomonas maltophilia RepID=UPI0002EB8E2D
Response regulator
Diguanylate cyclase {ECO:0000313|EMBL:KGK64836.1}; TaxID=317013 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas axonopodis pv. phaseoli.;"
scnpilot_solids1_trim150_scaffold_818_curated_13
unknown

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11540..11638
DNA (99bp) protein (33aa)

This feature has no annotations

scnpilot_solids1_trim150_scaffold_818_curated_14
Tolypothrix campylonemoides, Tolypothrix, Nostocales, Cyanobacteria, Bacteria

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comp(13437..14567)
DNA (1131bp) protein (377aa)
succinyl-diaminopimelate desuccinylase; K01439 succinyl-diaminopimelate desuccinylase [EC:3.5.1.18]
succinyl-diaminopimelate desuccinylase n=1 Tax=Pseudoxanthomonas sp. GW2 RepID=UPI00031C40BF
Succinyl-diaminopimelate desuccinylase {ECO:0000313|EMBL:KIJ71128.1}; TaxID=1245935 species="Bacteria; Cyanobacteria; Nostocales; Microchaetaceae; Tolypothrix.;" source="Tolypothrix campylonemoides VB511288.;"
scnpilot_solids1_trim150_scaffold_818_curated_15
Lysobacter daejeonensis, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14569..14928)
DNA (360bp) protein (120aa)
Putative arsenate reductase (ArsC family) n=3 Tax=Xanthomonas fuscans RepID=U4M1J3_9XANT
Arsenate reductase {ECO:0000313|EMBL:KGM56083.1}; TaxID=1385517 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter daejeonensis GH1-9.;"
arsenate reductase-like protein
scnpilot_solids1_trim150_scaffold_818_curated_16
Pseudoxanthomonas suwonensis, Pseudoxanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(14930..16819)
DNA (1890bp) protein (630aa)
acylase n=1 Tax=Pseudoxanthomonas sp. GW2 RepID=UPI0002E174B6
hydrolase CocE/NonD family protein; K06978
Hydrolase CocE/NonD family protein {ECO:0000313|EMBL:ADV26763.1}; TaxID=743721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Pseudoxanthomonas.;" source="Pseudoxanthomonas suwonensis (strain 11-1).;"
scnpilot_solids1_trim150_scaffold_818_curated_17
Lysobacter sp. A03, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(17095..17943)
DNA (849bp) protein (283aa)
2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase {ECO:0000256|HAMAP-Rule:MF_00811}; EC=2.3.1.117 {ECO:0000256|HAMAP-Rule:MF_00811};; Tetrahydrodipicolinate N-succinyltransferase {ECO:0000256|HAMAP-Rule:MF_00811}; TaxID=1199154 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter sp. A03.;"
2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase; K00674 2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase [EC:2.3.1.117]
2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase n=1 Tax=Stenotrophomonas maltophilia RepID=UPI0002E43ED0
scnpilot_solids1_trim150_scaffold_818_curated_18
Lysobacter dokdonensis, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(17940..20534)
DNA (2595bp) protein (865aa)
glnD; [protein-PII] uridylyltransferase (EC:2.7.7.59); K00990 [protein-PII] uridylyltransferase [EC:2.7.7.59]
PII uridylyl-transferase n=1 Tax=Stenotrophomonas maltophilia RepID=UPI00031C0FBC
Bifunctional uridylyltransferase/uridylyl-removing enzyme {ECO:0000256|HAMAP-Rule:MF_00277, ECO:0000256|SAAS:SAAS00228994}; Short=UTase/UR {ECO:0000256|HAMAP-Rule:MF_00277};; Bifunctional [protein-PII] modification enzyme {ECO:0000256|HAMAP-Rule:MF_00277}; Bifunctional nitrogen sensor protein {ECO:0000256|HAMAP-Rule:MF_00277}; TaxID=1300345 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter dokdonensis DS-58.;"
scnpilot_solids1_trim150_scaffold_818_curated_19
Lysobacter defluvii, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(20531..21307)
DNA (777bp) protein (259aa)
Methionine aminopeptidase {ECO:0000256|HAMAP-Rule:MF_01974}; Short=MAP {ECO:0000256|HAMAP-Rule:MF_01974};; Short=MetAP {ECO:0000256|HAMAP-Rule:MF_01974};; EC=3.4.11.18 {ECO:0000256|HAMAP-Rule:MF_01974};; Peptidase M {ECO:0000256|HAMAP-Rule:MF_01974}; TaxID=1385515 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter defluvii IMMIB APB-9 = DSM 18482.;"
methionine aminopeptidase; K01265 methionyl aminopeptidase [EC:3.4.11.18]
Methionine aminopeptidase n=1 Tax=Pseudoxanthomonas spadix (strain BD-a59) RepID=G7UPZ2_PSEUP
scnpilot_solids1_trim150_scaffold_818_curated_20
Stenotrophomonas maltophilia, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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21633..22412
DNA (780bp) protein (260aa)
30S ribosomal protein S2 n=6 Tax=Stenotrophomonas maltophilia RepID=RS2_STRMK
30S ribosomal protein S2 {ECO:0000256|HAMAP-Rule:MF_00291}; TaxID=40324 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas; Stenotrophomonas maltophilia group.;" source="Stenotrophomonas maltophilia (Pseudomonas maltophilia) (Xanthomonas; maltophilia).;"
rpsB; 30S ribosomal protein S2; K02967 small subunit ribosomal protein S2
scnpilot_solids1_trim150_scaffold_818_curated_21
Lysobacter dokdonensis, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22581..23459
DNA (879bp) protein (293aa)
endo-1,4-D-glucanase n=2 Tax=Xanthomonas RepID=UPI00036AFFB3
Elongation factor Ts {ECO:0000256|HAMAP-Rule:MF_00050, ECO:0000256|RuleBase:RU000642}; Short=EF-Ts {ECO:0000256|HAMAP-Rule:MF_00050};; TaxID=1300345 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter dokdonensis DS-58.;"
tsf; translation elongation factor Ts; K02357 elongation factor Ts
scnpilot_solids1_trim150_scaffold_818_curated_22
GWF1_Xanthomonadales_69_6_curated, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(23532..24002)
DNA (471bp) protein (157aa)
hypothetical protein; K00783 23S rRNA (pseudouridine1915-N3)-methyltransferase [EC:2.1.1.177]
Ribosomal RNA large subunit methyltransferase H id=2861368 bin=GWF1_Xanthomonadales_69_6 species=Pseudoxanthomonas suwonensis genus=Pseudoxanthomonas taxon_order=Xanthomonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWF1_Xanthomonadales_69_6 organism_group=Gammaproteobacteria
Tax=GWF1_Xanthomonadales_69_6_curated
scnpilot_solids1_trim150_scaffold_818_curated_23
Xanthomonas arboricola, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(23999..24208)
DNA (210bp) protein (70aa)
molecular chaperone DnaJ n=1 Tax=Xanthomonas arboricola RepID=UPI0002DB6597
Molecular chaperone DnaJ {ECO:0000313|EMBL:KER84578.1}; TaxID=454957 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas arboricola pv. celebensis.;"
DnaJ domain-containing protein
Displaying 23 items

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