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scnpilot_solids1_trim150_scaffold_1899_curated

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Displaying 11 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids1_trim150_scaffold_1899_curated_1
Pseudoxanthomonas suwonensis, Pseudoxanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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3..743
DNA (741bp) protein (247aa)
tRNA(Ile)-lysidine synthase {ECO:0000256|HAMAP-Rule:MF_01161, ECO:0000256|SAAS:SAAS00043109}; EC=6.3.4.19 {ECO:0000256|HAMAP-Rule:MF_01161, ECO:0000256|SAAS:SAAS00043112};; tRNA(Ile)-2-lysyl-cytidine synthase {ECO:0000256|HAMAP-Rule:MF_01161}; tRNA(Ile)-lysidine synthetase {ECO:0000256|HAMAP-Rule:MF_01161}; TaxID=314722 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Pseudoxanthomonas.;" source="Pseudoxanthomonas suwonensis.;"
tRNA(Ile)-lysidine synthetase; K04075 tRNA(Ile)-lysidine synthase [EC:6.3.4.19]
tRNA(Ile)-lysidine synthase id=2642047 bin=GWF1_Xanthomonadales_69_6 species=Pseudoxanthomonas suwonensis genus=Pseudoxanthomonas taxon_order=Xanthomonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWF1_Xanthomonadales_69_6 organism_group=Gammaproteobacteria
scnpilot_solids1_trim150_scaffold_1899_curated_2
Pseudoxanthomonas suwonensis, Pseudoxanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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753..1016
DNA (264bp) protein (88aa)
exodeoxyribonuclease VII small subunit; K03602 exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
Exodeoxyribonuclease 7 small subunit {ECO:0000256|HAMAP-Rule:MF_00337, ECO:0000256|SAAS:SAAS00198685}; EC=3.1.11.6 {ECO:0000256|HAMAP-Rule:MF_00337, ECO:0000256|SAAS:SAAS00198686};; Exodeoxyribonuclease VII small subunit {ECO:0000256|HAMAP-Rule:MF_00337}; TaxID=743721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Pseudoxanthomonas.;" source="Pseudoxanthomonas suwonensis (strain 11-1).;"
Exodeoxyribonuclease 7 small subunit n=1 Tax=Pseudoxanthomonas suwonensis (strain 11-1) RepID=E6WV54_PSEUU
scnpilot_solids1_trim150_scaffold_1899_curated_3
Lysobacter daejeonensis, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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1033..1878
DNA (846bp) protein (282aa)
polyprenyl synthetase; K00795 farnesyl diphosphate synthase [EC:2.5.1.1 2.5.1.10]
Polyprenyl synthetase n=1 Tax=Pseudoxanthomonas suwonensis (strain 11-1) RepID=E6WV55_PSEUU
Geranyl transferase {ECO:0000313|EMBL:KGM56058.1}; TaxID=1385517 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter daejeonensis GH1-9.;"
scnpilot_solids1_trim150_scaffold_1899_curated_4
Xanthomonas campestris, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(1910..2896)
DNA (987bp) protein (329aa)
Putative uncharacterized protein n=1 Tax=Shewanella amazonensis (strain ATCC BAA-1098 / SB2B) RepID=A1S9C8_SHEAM
Strain LMCP11 contig_21, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ25886.1}; TaxID=339 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas campestris.;"
hypothetical protein; K07052
scnpilot_solids1_trim150_scaffold_1899_curated_5
Lysobacter daejeonensis, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(2904..3344)
DNA (441bp) protein (147aa)
Putative uncharacterized protein n=1 Tax=Pseudoxanthomonas suwonensis (strain 11-1) RepID=E6WV56_PSEUU
Uncharacterized protein {ECO:0000313|EMBL:KGM56057.1}; TaxID=1385517 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter daejeonensis GH1-9.;"
hypothetical protein; K09940 hypothetical protein
scnpilot_solids1_trim150_scaffold_1899_curated_6
Arenimonas malthae, Arenimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(3531..3977)
DNA (447bp) protein (149aa)
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI00037EFA0C
Uncharacterized protein {ECO:0000313|EMBL:KFN41469.1}; TaxID=1384054 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Arenimonas.;" source="Arenimonas malthae CC-JY-1.;"
hypothetical protein; K09940 hypothetical protein
scnpilot_solids1_trim150_scaffold_1899_curated_7
Lysobacter concretionis, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(4039..5325)
DNA (1287bp) protein (429aa)
Putative modulator of DNA gyrase peptidase U62 protein PmbA n=1 Tax=Xanthomonas campestris pv. campestris (strain B100) RepID=B0RR23_XANCB
Peptidase PmbA {ECO:0000313|EMBL:KGM52381.1}; TaxID=1122185 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter concretionis Ko07 = DSM 16239.;"
PmbA protein; K03592 PmbA protein
scnpilot_solids1_trim150_scaffold_1899_curated_8
Pseudoxanthomonas suwonensis, Pseudoxanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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5421..5996
DNA (576bp) protein (192aa)
UPF0307 protein Psesu_2223 n=1 Tax=Pseudoxanthomonas suwonensis (strain 11-1) RepID=E6WV58_PSEUU
UPF0307 protein WQ53_03255 {ECO:0000256|HAMAP-Rule:MF_00765}; TaxID=314722 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Pseudoxanthomonas.;" source="Pseudoxanthomonas suwonensis.;"
hypothetical protein; K09889 ribosome-associated protein
scnpilot_solids1_trim150_scaffold_1899_curated_9
Lysobacter daejeonensis, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(6005..7444)
DNA (1440bp) protein (480aa)
protease TldD n=2 Tax=Xanthomonas RepID=UPI00037B7A70
Protease TldD {ECO:0000313|EMBL:KGM56054.1}; TaxID=1385517 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter daejeonensis GH1-9.;"
peptidase U62 modulator of DNA gyrase; K03568 TldD protein
scnpilot_solids1_trim150_scaffold_1899_curated_10
Lysobacter capsici, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(7576..9294)
DNA (1719bp) protein (573aa)
membrane protein n=1 Tax=Stenotrophomonas maltophilia RepID=UPI0002D60716
Uncharacterized protein {ECO:0000313|EMBL:EYR66026.1}; TaxID=1444315 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter capsici AZ78.;"
exported protein
scnpilot_solids1_trim150_scaffold_1899_curated_11
Xanthomonas fuscans, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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9883..10335
DNA (453bp) protein (151aa)
Putative uncharacterized protein n=1 Tax=Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122 RepID=D4SU63_9XANT
Uncharacterized protein {ECO:0000313|EMBL:EFF44299.1}; TaxID=427081 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122.;"
Displaying 11 items

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