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scnpilot_solids1_trim150_scaffold_2573_curated

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Displaying 17 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids1_trim150_scaffold_2573_curated_1
R_Burkholderiales_69_20, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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1..1041
-----------------
DNA (1041bp)
protein (347aa)
ferric reductase n=1 Tax=Thiobacillus denitrificans RepID=UPI00037AD2D6
ferric reductase domain-containing protein
Tax=RIFCSPHIGHO2_12_FULL_Burkholderiales_69_20_curated
scnpilot_solids1_trim150_scaffold_2573_curated_2
R_Burkholderiales_69_20, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(1136..1378)
-----------------
DNA (243bp)
protein (81aa)
Multidrug resistance efflux pump n=1 Tax=Burkholderiales bacterium JOSHI_001 RepID=H5WRN7_9BURK
RND family efflux transporter MFP subunit; K02005 HlyD family secretion protein
Tax=RIFCSPHIGHO2_12_FULL_Burkholderiales_69_20_curated
scnpilot_solids1_trim150_scaffold_2573_curated_3
RIFOXYA1_FULL_Xanthomonadales_69_10_curated, Gammaproteobacteria, Proteobacteria, Bacteria

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1713..2420
-----------------
DNA (708bp)
protein (236aa)
pseudouridylate synthase; K06175 tRNA pseudouridine65 synthase [EC:5.4.99.26]
Pseudouridine synthase n=1 Tax=Xanthomonas oryzae pv. oryzae (strain MAFF 311018) RepID=Q2P8Q2_XANOM
Tax=RIFOXYA1_FULL_Xanthomonadales_69_10_curated
scnpilot_solids1_trim150_scaffold_2573_curated_4
Lysobacter capsici, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(2460..2969)
-----------------
DNA (510bp)
protein (170aa)
hypothetical protein n=1 Tax=Xanthomonas sp. SHU308 RepID=UPI00036F1DC6
Uncharacterized protein {ECO:0000313|EMBL:EYR68181.1}; TaxID=1444315 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter capsici AZ78.;"
hypothetical protein; K09924 hypothetical protein
scnpilot_solids1_trim150_scaffold_2573_curated_5
Lysobacter daejeonensis, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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3095..3508
-----------------
DNA (414bp)
protein (138aa)
Uncharacterized protein n=3 Tax=Stenotrophomonas maltophilia RepID=I0KIA2_STEMA
Peptidyl-tRNA hydrolase {ECO:0000313|EMBL:KGM53993.1}; TaxID=1385517 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter daejeonensis GH1-9.;"
peptidyl-tRNA hydrolase domain-containing protein; K15034 ribosome-associated protein
scnpilot_solids1_trim150_scaffold_2573_curated_6
RIFOXYA1_FULL_Xanthomonadales_69_10_curated, Gammaproteobacteria, Proteobacteria, Bacteria

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3559..4152
-----------------
DNA (594bp)
protein (198aa)
acyltransferase n=1 Tax=Pseudoxanthomonas sp. GW2 RepID=UPI0003038F0E
phospholipid/glycerol acyltransferase
Tax=RIFOXYA1_FULL_Xanthomonadales_69_10_curated
scnpilot_solids1_trim150_scaffold_2573_curated_7
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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4396..5391
-----------------
DNA (996bp)
protein (332aa)
Uncharacterized protein n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WII7_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL99278.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_2573_curated_8
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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5436..6494
-----------------
DNA (1059bp)
protein (353aa)
Uncharacterized protein n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WBR7_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL96908.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
HEAT repeat-containing protein
scnpilot_solids1_trim150_scaffold_2573_curated_9
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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6491..7975
-----------------
DNA (1485bp)
protein (495aa)
Glycosyl transferase family protein n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WBR8_9GAMM
Glycosyl transferase family protein {ECO:0000313|EMBL:EIL96909.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
glycosyl transferase family protein
scnpilot_solids1_trim150_scaffold_2573_curated_10
unknown

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comp(7807..8820)
-----------------
DNA (1014bp)
protein (338aa)

This feature has no annotations

scnpilot_solids1_trim150_scaffold_2573_curated_11
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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9285..11684
-----------------
DNA (2400bp)
protein (800aa)
Phosphoglycerol transferase n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WBS0_9GAMM
Phosphoglycerol transferase {ECO:0000313|EMBL:EIL96911.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
sulfatase
scnpilot_solids1_trim150_scaffold_2573_curated_12
Massilia sp. LC238, Massilia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11681..12649
-----------------
DNA (969bp)
protein (323aa)
hypothetical protein n=1 Tax=Massilia niastensis RepID=UPI00036EC092
Uncharacterized protein {ECO:0000313|EMBL:KFC65947.1}; TaxID=1502852 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Massilia.;" source="Massilia sp. LC238.;"
Fibronectin type III domain-containing protein
scnpilot_solids1_trim150_scaffold_2573_curated_13
R_Sphingopyxis_65_24, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(12711..13067)
-----------------
DNA (357bp)
protein (119aa)
TonB-dependent receptor n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W2S2_9GAMM
TonB-dependent receptor
Tax=RIFCSPHIGHO2_01_FULL_Sphingopyxis_65_24_curated
scnpilot_solids1_trim150_scaffold_2573_curated_14
Lysobacter capsici, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13081..15831)
-----------------
DNA (2751bp)
protein (917aa)
TonB-dependent receptor n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W2S2_9GAMM
TonB-dependent receptor {ECO:0000313|EMBL:EYR67014.1}; TaxID=1444315 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter capsici AZ78.;"
TonB-dependent receptor
scnpilot_solids1_trim150_scaffold_2573_curated_15
Lysobacter capsici, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15988..17037)
-----------------
DNA (1050bp)
protein (350aa)
Two-component system sensor protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W2S1_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EYR67013.1}; TaxID=1444315 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter capsici AZ78.;"
Fe2+-dicitrate sensor, membrane component
scnpilot_solids1_trim150_scaffold_2573_curated_16
RIFOXYA1_FULL_Xanthomonadales_68_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17041..17610)
-----------------
DNA (570bp)
protein (190aa)
transcriptional regulator n=1 Tax=Xanthomonas sp. SHU308 RepID=UPI000366811E
two-component system regulatory protein
Tax=RIFOXYA1_FULL_Xanthomonadales_68_6_curated
scnpilot_solids1_trim150_scaffold_2573_curated_17
RIFOXYA1_FULL_Xanthomonadales_68_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17705..17917
-----------------
DNA (213bp)
protein (71aa)
peptidase T n=1 Tax=Xanthomonas sp. SHU199 RepID=UPI0003643015
peptidase S51 dipeptidase E
Tax=RIFOXYA1_FULL_Xanthomonadales_68_6_curated
Displaying 17 items

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