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scnpilot_solids1_trim150_scaffold_1552_curated

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Displaying 13 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids1_trim150_scaffold_1552_curated_1
Lysobacter concretionis, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(3..428)
DNA (426bp) protein (142aa)
hypothetical protein, partial n=1 Tax=Xanthomonas sp. SHU199 RepID=UPI00038073D0
Nucleoside-diphosphate sugar epimerase {ECO:0000313|EMBL:KGM52916.1}; TaxID=1122185 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter concretionis Ko07 = DSM 16239.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_1552_curated_2
Lysobacter capsici, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(425..1633)
DNA (1209bp) protein (403aa)
sodium:proton antiporter n=1 Tax=Arenimonas oryziterrae RepID=UPI0003B650D2
Na(+)/H(+) antiporter NhaA {ECO:0000256|HAMAP-Rule:MF_01844}; Sodium/proton antiporter NhaA {ECO:0000256|HAMAP-Rule:MF_01844}; TaxID=1444315 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter capsici AZ78.;"
Na+/H+ antiporter NhaA; K03313 Na+:H+ antiporter, NhaA family
scnpilot_solids1_trim150_scaffold_1552_curated_3
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(1682..2323)
DNA (642bp) protein (214aa)
Uncharacterized protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VYU4_9GAMM
hypothetical protein
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
scnpilot_solids1_trim150_scaffold_1552_curated_4
Lysobacter daejeonensis, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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2473..3195
DNA (723bp) protein (241aa)
Uncharacterized protein n=3 Tax=Xanthomonas RepID=Q8PQ73_XANAC
Uncharacterized protein {ECO:0000313|EMBL:KGM55079.1}; TaxID=1385517 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter daejeonensis GH1-9.;"
Hypothetical Protein
scnpilot_solids1_trim150_scaffold_1552_curated_5
Lysobacter daejeonensis, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3208..4503)
DNA (1296bp) protein (432aa)
Homogentisate 1,2-dioxygenase {ECO:0000256|HAMAP-Rule:MF_00334, ECO:0000256|SAAS:SAAS00015626}; Short=HGDO {ECO:0000256|HAMAP-Rule:MF_00334};; EC=1.13.11.5 {ECO:0000256|HAMAP-Rule:MF_00334, ECO:0000256|SAAS:SAAS00015614};; Homogentisate oxygenase {ECO:0000256|HAMAP-Rule:MF_00334}; Homogentisic acid oxidase {ECO:0000256|HAMAP-Rule:MF_00334}; Homogentisicase {ECO:0000256|HAMAP-Rule:MF_00334}; TaxID=1385517 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;"
homogentisate 1,2-dioxygenase (EC:1.13.11.5); K00451 homogentisate 1,2-dioxygenase [EC:1.13.11.5]
homogentisate 1,2-dioxygenase n=1 Tax=Stenotrophomonas maltophilia RepID=UPI0002D41640
scnpilot_solids1_trim150_scaffold_1552_curated_6
Arenimonas malthae, Arenimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(4547..5632)
DNA (1086bp) protein (362aa)
Probable 4-hydroxyphenylpyruvate dioxygenase protein id=2773062 bin=GWF1_Xanthomonadales_69_6 species=unknown genus=Rhodanobacter taxon_order=Xanthomonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWF1_Xanthomonadales_69_6 organism_group=Gammaproteobacteria
4-hydroxyphenylpyruvate dioxygenase {ECO:0000313|EMBL:KFN42364.1}; TaxID=1384054 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Arenimonas.;" source="Arenimonas malthae CC-JY-1.;"
4-hydroxyphenylpyruvate dioxygenase
scnpilot_solids1_trim150_scaffold_1552_curated_7
RIFOXYA1_FULL_Xanthomonadales_69_10_curated, Gammaproteobacteria, Proteobacteria, Bacteria

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5717..6190
DNA (474bp) protein (158aa)
MarR family transcriptional regulator n=1 Tax=Arenimonas oryziterrae RepID=UPI0003B33CDD
MarR family transcriptional regulator
Tax=RIFOXYA1_FULL_Xanthomonadales_69_10_curated
scnpilot_solids1_trim150_scaffold_1552_curated_8
GWF1_Xanthomonadales_69_6_curated, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(6282..7793)
DNA (1512bp) protein (504aa)
Amino acid/peptide transporter id=2773053 bin=GWF1_Xanthomonadales_69_6 species=Pseudoxanthomonas suwonensis genus=Pseudoxanthomonas taxon_order=Xanthomonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWF1_Xanthomonadales_69_6 organism_group=Gammaproteobacteria
amino acid/peptide transporter; K03305 proton-dependent oligopeptide transporter, POT family
Tax=GWF1_Xanthomonadales_69_6_curated
scnpilot_solids1_trim150_scaffold_1552_curated_9
Xanthomonas sacchari, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(7953..8945)
DNA (993bp) protein (331aa)
Tryptophan 2,3-dioxygenase {ECO:0000256|HAMAP-Rule:MF_01972}; Short=TDO {ECO:0000256|HAMAP-Rule:MF_01972};; EC=1.13.11.11 {ECO:0000256|HAMAP-Rule:MF_01972};; Tryptamin 2,3-dioxygenase {ECO:0000256|HAMAP-Rule:MF_01972}; Tryptophan oxygenase {ECO:0000256|HAMAP-Rule:MF_01972}; Tryptophan pyrrolase {ECO:0000256|HAMAP-Rule:MF_01972}; Tryptophanase {ECO:0000256|HAMAP-Rule:MF_01972}; TaxID=56458 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xantho
Tryptophan 2,3-dioxygenase (EC:1.13.11.11); K00453 tryptophan 2,3-dioxygenase [EC:1.13.11.11]
tryptophan 2,3-dioxygenase n=1 Tax=Rudaea cellulosilytica RepID=UPI0003613F35
scnpilot_solids1_trim150_scaffold_1552_curated_10
Lysobacter concretionis, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8975..10051
DNA (1077bp) protein (359aa)
pdhA; branched-chain alpha-keto acid dehydrogenase, E1 component subunit alpha (EC:1.2.4.4); K00161 pyruvate dehydrogenase E1 component subunit alpha [EC:1.2.4.1]
ABC transporter permease n=1 Tax=Pseudomonas geniculata RepID=UPI00029A3700
Pyruvate dehydrogenase {ECO:0000313|EMBL:KGM52903.1}; TaxID=1122185 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter concretionis Ko07 = DSM 16239.;"
scnpilot_solids1_trim150_scaffold_1552_curated_11
Lysobacter arseniciresistens, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10048..11034
DNA (987bp) protein (329aa)
transketolase central region; K00162 pyruvate dehydrogenase E1 component subunit beta [EC:1.2.4.1]
2-oxoisovalerate dehydrogenase subunit beta n=1 Tax=Arenimonas oryziterrae RepID=UPI0003B36717
2-oxoisovalerate dehydrogenase {ECO:0000313|EMBL:KGM55565.1}; TaxID=913325 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter arseniciresistens ZS79.;"
scnpilot_solids1_trim150_scaffold_1552_curated_12
Lysobacter daejeonensis, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11045..12253
DNA (1209bp) protein (403aa)
Dihydrolipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex (EC:2.3.1.168); K00627 pyruvate dehydrogenase E2 component (dihydrolipoamide acetyltransferase) [EC:2.3.1.12]
Dihydrolipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex n=1 Tax=Stenotrophomonas maltophilia D457 RepID=I0KTP7_STEMA
Branched-chain alpha-keto acid dehydrogenase subunit E2 {ECO:0000313|EMBL:KGM55072.1}; TaxID=1385517 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter daejeonensis GH1-9.;"
scnpilot_solids1_trim150_scaffold_1552_curated_13
Lysobacter daejeonensis, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12205..12363
DNA (159bp) protein (53aa)
branched-chain alpha-keto acid dehydrogenase subunit E2 n=1 Tax=Dyella ginsengisoli RepID=UPI0003487C31
Branched-chain alpha-keto acid dehydrogenase subunit E2 {ECO:0000313|EMBL:KGM55072.1}; TaxID=1385517 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter daejeonensis GH1-9.;"
pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase component
Displaying 13 items

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