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scnpilot_solids1_trim150_scaffold_1112_curated

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Displaying 18 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids1_trim150_scaffold_1112_curated_1

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comp(2..340)
DNA (339bp) protein (113aa)
Protein containing DUF1568 n=2 Tax=mine drainage metagenome RepID=T0Y689_9ZZZZ
Protein containing DUF1568 {ECO:0000313|EMBL:EQD28638.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
hypothetical protein; K07491 putative transposase
scnpilot_solids1_trim150_scaffold_1112_curated_2
Candidatus Symbiobacter mobilis, Candidatus Symbiobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(469..1830)
DNA (1362bp) protein (454aa)
Uncharacterized protein n=1 Tax=Candidatus Symbiobacter mobilis CR RepID=U5N684_9BURK
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGX86810.1}; TaxID=946483 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae.;" source="Candidatus Symbiobacter mobilis CR.;"
scnpilot_solids1_trim150_scaffold_1112_curated_3
RIFOXYA1_FULL_Xanthomonadales_69_10_curated, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(1904..2020)
DNA (117bp) protein (39aa)
Uncharacterized protein n=2 Tax=Xanthomonas RepID=B0RMH4_XANCB
hypothetical protein
Tax=RIFOXYA1_FULL_Xanthomonadales_69_10_curated
scnpilot_solids1_trim150_scaffold_1112_curated_4
Arenimonas donghaensis, Arenimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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2179..2406
DNA (228bp) protein (76aa)
Uncharacterized protein {ECO:0000313|EMBL:KFL36269.1}; TaxID=1121014 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Arenimonas.;" source="Arenimonas donghaensis DSM 18148 = HO3-R19.;"
scnpilot_solids1_trim150_scaffold_1112_curated_5

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comp(2382..3074)
DNA (693bp) protein (231aa)
Protein containing DUF1568 n=2 Tax=mine drainage metagenome RepID=T0Y689_9ZZZZ
Protein containing DUF1568 {ECO:0000313|EMBL:EQD28638.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
hypothetical protein; K07491 putative transposase
scnpilot_solids1_trim150_scaffold_1112_curated_6
Salinisphaera hydrothermalis, Salinisphaera, Salinisphaerales, Gammaproteobacteria, Proteobacteria, Bacteria

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3221..4375
DNA (1155bp) protein (385aa)
hypothetical protein n=1 Tax=Hahella ganghwensis RepID=UPI00037C371A
Diguanylate cyclase {ECO:0000313|EMBL:KEZ76751.1}; TaxID=1304275 species="Bacteria; Proteobacteria; Gammaproteobacteria; Salinisphaerales; Salinisphaeraceae; Salinisphaera.;" source="Salinisphaera hydrothermalis C41B8.;"
diguanylate cyclase
scnpilot_solids1_trim150_scaffold_1112_curated_7
RIFOXYA1_FULL_Xanthomonadales_69_10_curated, Gammaproteobacteria, Proteobacteria, Bacteria

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4581..5090
DNA (510bp) protein (170aa)
Tax=RIFOXYA1_FULL_Xanthomonadales_69_10_curated
scnpilot_solids1_trim150_scaffold_1112_curated_8
Lysobacter concretionis, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(5144..5797)
DNA (654bp) protein (218aa)
Peptidyl-prolyl cis-trans isomerase {ECO:0000256|RuleBase:RU003915}; EC=5.2.1.8 {ECO:0000256|RuleBase:RU003915};; TaxID=1122185 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter concretionis Ko07 = DSM 16239.;"
peptidylprolyl isomerase (EC:5.2.1.8); K03772 FKBP-type peptidyl-prolyl cis-trans isomerase FkpA [EC:5.2.1.8]
peptidyl-prolyl cis-trans isomerase n=1 Tax=Pseudoxanthomonas sp. GW2 RepID=UPI0002ED1543
scnpilot_solids1_trim150_scaffold_1112_curated_9
R_Gammaproteobacteria_56_15, Gammaproteobacteria, Proteobacteria, Bacteria

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5814..6917
DNA (1104bp) protein (368aa)
MFS transporter n=1 Tax=Kiloniella laminariae RepID=UPI0003760B26
major facilitator transporter
Tax=RIFCSPLOWO2_02_FULL_Gammaproteobacteria_56_15_curated
scnpilot_solids1_trim150_scaffold_1112_curated_10
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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7038..7307
DNA (270bp) protein (90aa)
Putative transmembrane protein n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WMN3_9GAMM
Putative transmembrane protein {ECO:0000313|EMBL:EIM00725.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
putative transmembrane protein
scnpilot_solids1_trim150_scaffold_1112_curated_11
Lysobacter daejeonensis, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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7443..8156
DNA (714bp) protein (238aa)
Uncharacterized protein n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WMN4_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:KGM55748.1}; TaxID=1385517 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter daejeonensis GH1-9.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_1112_curated_12
BJP_IG2103_SUB10_Xanthomonadales_61_45, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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8417..11344
DNA (2928bp) protein (976aa)
diguanylate cyclase n=1 Tax=Arenimonas oryziterrae RepID=UPI0003B47AC6
diguanylate cyclase (GGDEF) domain-containing protein
Tax=BJP_IG2103_SUB10_Xanthomonadales_61_45
scnpilot_solids1_trim150_scaffold_1112_curated_13
Dyella japonica, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(11385..12407)
DNA (1023bp) protein (341aa)
hypothetical protein n=1 Tax=Dyella japonica RepID=UPI000379200D
Diguanylate cyclase {ECO:0000313|EMBL:AIF46630.1}; TaxID=1217721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella japonica A8.;"
GAF sensor-containing diguanylate cyclase
scnpilot_solids1_trim150_scaffold_1112_curated_14
Pandoraea sp. SD6-2, Pandoraea, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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12536..13618
DNA (1083bp) protein (361aa)
Dihydroorotase {ECO:0000256|HAMAP-Rule:MF_00219, ECO:0000256|RuleBase:RU003440}; Short=DHOase {ECO:0000256|HAMAP-Rule:MF_00219};; EC=3.5.2.3 {ECO:0000256|HAMAP-Rule:MF_00219, ECO:0000256|RuleBase:RU003440};; TaxID=1286093 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Pandoraea.;" source="Pandoraea sp. SD6-2.;"
dihydroorotase, homodimeric type (EC:3.5.2.3); K01465 dihydroorotase [EC:3.5.2.3]
Dihydroorotase n=1 Tax=Pandoraea sp. SD6-2 RepID=R7X5S3_9BURK
scnpilot_solids1_trim150_scaffold_1112_curated_15
Cardiobacterium valvarum, Cardiobacterium, Cardiobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(13787..14296)
DNA (510bp) protein (170aa)
Antioxidant, AhpC/TSA family n=1 Tax=Cardiobacterium valvarum F0432 RepID=G9ZFB1_9GAMM
Antioxidant, AhpC/TSA family {ECO:0000313|EMBL:EHM54089.1}; TaxID=797473 species="Bacteria; Proteobacteria; Gammaproteobacteria; Cardiobacteriales; Cardiobacteriaceae; Cardiobacterium.;" source="Cardiobacterium valvarum F0432.;"
scsD; copper-sensitivity secreted suppressor protein D
scnpilot_solids1_trim150_scaffold_1112_curated_16
Rheinheimera nanhaiensis, Rheinheimera, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14421..14978)
DNA (558bp) protein (186aa)
Uncharacterized protein n=1 Tax=Rheinheimera nanhaiensis E407-8 RepID=I1DXD9_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:GAB58717.1}; TaxID=562729 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Chromatiaceae; Rheinheimera.;" source="Rheinheimera nanhaiensis E407-8.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_1112_curated_17
RIFOXYA1_FULL_Xanthomonadales_69_10_curated, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(15104..15556)
DNA (453bp) protein (151aa)
hypothetical protein n=1 Tax=Thioalkalivibrio sp. ALJ24 RepID=UPI00036B8C27
diguanylate cyclase; K02488 two-component system, cell cycle response regulator
Tax=RIFOXYA1_FULL_Xanthomonadales_69_10_curated
scnpilot_solids1_trim150_scaffold_1112_curated_18
Acidovorax sp. NO-1, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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15753..16076
DNA (324bp) protein (108aa)
PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase n=1 Tax=Acidovorax sp. NO-1 RepID=H0C3P9_9BURK
PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase {ECO:0000313|EMBL:EHL20736.1}; TaxID=512030 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. NO-1.;"
Displaying 18 items

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