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scnpilot_solids1_trim150_scaffold_1761_curated

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Displaying 14 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids1_trim150_scaffold_1761_curated_1
RIFOXYA1_FULL_Xanthomonadales_69_10_curated, Gammaproteobacteria, Proteobacteria, Bacteria

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1..564
DNA (564bp) protein (188aa)
Short-chain dehydrogenase/reductase SDR n=1 Tax=Pseudoxanthomonas suwonensis (strain 11-1) RepID=E6WPM5_PSEUU
short-chain dehydrogenase/reductase SDR
Tax=RIFOXYA1_FULL_Xanthomonadales_69_10_curated
scnpilot_solids1_trim150_scaffold_1761_curated_2
Lysobacter arseniciresistens, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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621..1097
DNA (477bp) protein (159aa)
tRNA (cytidine(34)-2'-O)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01885}; EC=2.1.1.207 {ECO:0000256|HAMAP-Rule:MF_01885};; tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL {ECO:0000256|HAMAP-Rule:MF_01885}; TaxID=913325 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter arseniciresistens ZS79.;"
tRNA/rrna methyltransferase , spou class protein (EC:2.1.1.-); K03216 tRNA (cytidine/uridine-2'-O-)-methyltransferase [EC:2.1.1.207]
tRNA (cytidine(34)-2'-O)-methyltransferase n=1 Tax=Xanthomonas albilineans (strain GPE PC73 / CFBP 7063) RepID=D2UGP2_XANAP
scnpilot_solids1_trim150_scaffold_1761_curated_3
Pseudoxanthomonas suwonensis, Pseudoxanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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1255..1812
DNA (558bp) protein (186aa)
Putative uncharacterized protein n=1 Tax=Pseudoxanthomonas suwonensis (strain 11-1) RepID=E6WPM2_PSEUU
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:ADV25977.1}; Flags: Precursor;; TaxID=743721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Pseudoxanthomonas.;" source="Pseudoxanthomonas suwonensis (strain 11-1).;"
scnpilot_solids1_trim150_scaffold_1761_curated_4
Lysobacter capsici, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(1901..2929)
DNA (1029bp) protein (343aa)
Glycerol-3-phosphate dehydrogenase [NAD(P)+] {ECO:0000256|HAMAP-Rule:MF_00394}; EC=1.1.1.94 {ECO:0000256|HAMAP-Rule:MF_00394};; NAD(P)H-dependent glycerol-3-phosphate dehydrogenase {ECO:0000256|HAMAP-Rule:MF_00394}; TaxID=1444315 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter capsici AZ78.;"
gpsA; NAD(P)H-dependent glycerol-3-phosphate dehydrogenase (EC:1.1.1.94); K00057 glycerol-3-phosphate dehydrogenase (NAD(P)+) [EC:1.1.1.94]
Glycerol-3-phosphate dehydrogenase [NAD(P)+] n=4 Tax=Xanthomonas campestris RepID=GPDA_XANC8
scnpilot_solids1_trim150_scaffold_1761_curated_5
Lysobacter daejeonensis, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(2940..3464)
DNA (525bp) protein (175aa)
preprotein translocase subunit SecB n=1 Tax=Xanthomonas sp. M97 RepID=UPI00039B7EF2
Protein-export protein SecB {ECO:0000256|HAMAP-Rule:MF_00821}; TaxID=1385517 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter daejeonensis GH1-9.;"
secB; preprotein translocase subunit SecB; K03071 preprotein translocase subunit SecB
scnpilot_solids1_trim150_scaffold_1761_curated_6
Lysobacter sp. A03, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(3581..3973)
DNA (393bp) protein (131aa)
membrane protein n=1 Tax=Xanthomonas RepID=UPI00031DA4A2
NODE_5, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ98020.1}; TaxID=1199154 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter sp. A03.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_1761_curated_7
Lysobacter arseniciresistens, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(4065..4481)
DNA (417bp) protein (139aa)
Hypothetical secreted protein n=1 Tax=Xanthomonas albilineans (strain GPE PC73 / CFBP 7063) RepID=D2UGP7_XANAP
Uncharacterized protein {ECO:0000313|EMBL:KGM53625.1}; TaxID=913325 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter arseniciresistens ZS79.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_1761_curated_8
RIFOXYA1_FULL_Xanthomonadales_68_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(4548..5018)
DNA (471bp) protein (157aa)
Uncharacterized protein n=1 Tax=Xanthomonas fuscans subsp. fuscans RepID=U4LX12_9XANT
hypothetical protein
Tax=RIFOXYA1_FULL_Xanthomonadales_68_6_curated
scnpilot_solids1_trim150_scaffold_1761_curated_9
Stenotrophomonas rhizophila, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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5064..5771
DNA (708bp) protein (236aa)
Uroporphyrinogen-III synthase {ECO:0000313|EMBL:AHY60825.1}; EC=4.2.1.75 {ECO:0000313|EMBL:AHY60825.1};; TaxID=216778 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas rhizophila.;"
uroporphyrinogen-III synthase; K01719 uroporphyrinogen-III synthase [EC:4.2.1.75]
uroporphyrinogen III synthase n=1 Tax=Stenotrophomonas maltophilia RepID=UPI0002EB71B8
scnpilot_solids1_trim150_scaffold_1761_curated_10
Lysobacter dokdonensis, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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5782..6759
DNA (978bp) protein (326aa)
hypothetical protein; K02496 uroporphyrin-III C-methyltransferase [EC:2.1.1.107]
Putative uncharacterized protein n=1 Tax=Xanthomonas campestris pv. raphani 756C RepID=G0CLZ3_XANCA
Uroporphyrin-III c-methyltransferase protein {ECO:0000313|EMBL:KGQ19067.1}; TaxID=1300345 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter dokdonensis DS-58.;"
scnpilot_solids1_trim150_scaffold_1761_curated_11
Lysobacter sp. A03, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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6887..8134
DNA (1248bp) protein (416aa)
porphyrin biosynthesis protein n=1 Tax=Xanthomonas sacchari RepID=UPI000262B312
NODE_5, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ98015.1}; TaxID=1199154 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter sp. A03.;"
HemY domain-containing protein; K02498 HemY protein
scnpilot_solids1_trim150_scaffold_1761_curated_12
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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8275..9120
DNA (846bp) protein (282aa)
Uncharacterized protein n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WET8_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL97979.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
EamA-like transporter family
scnpilot_solids1_trim150_scaffold_1761_curated_13
RIFOXYA1_FULL_Xanthomonadales_69_10_curated, Gammaproteobacteria, Proteobacteria, Bacteria

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9146..10078
DNA (933bp) protein (311aa)
coproporphyrinogen oxidase (EC:1.3.3.3); K00228 coproporphyrinogen III oxidase [EC:1.3.3.3]
coproporphyrinogen III oxidase n=1 Tax=Pseudoxanthomonas sp. GW2 RepID=UPI0002F8438E
Tax=RIFOXYA1_FULL_Xanthomonadales_69_10_curated
scnpilot_solids1_trim150_scaffold_1761_curated_14
Pseudoxanthomonas suwonensis, Pseudoxanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(10079..11002)
DNA (924bp) protein (308aa)
Arginase {ECO:0000256|RuleBase:RU361159}; EC=3.5.3.1 {ECO:0000256|RuleBase:RU361159};; TaxID=314722 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Pseudoxanthomonas.;" source="Pseudoxanthomonas suwonensis.;"
arginase; K01476 arginase [EC:3.5.3.1]
arginase n=1 Tax=Pseudoxanthomonas sp. GW2 RepID=UPI0002ED8A66
Displaying 14 items

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