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scnpilot_solids1_trim150_scaffold_995_curated

Search features with annotation key words

Displaying items 1-30 of 36 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids1_trim150_scaffold_995_curated_1

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1..771
DNA (771bp) protein (257aa)
UDP-N-acetylenolpyruvoylglucosamine reductase {ECO:0000256|HAMAP-Rule:MF_00037, ECO:0000256|SAAS:SAAS00041869}; EC=1.3.1.98 {ECO:0000256|HAMAP-Rule:MF_00037, ECO:0000256|SAAS:SAAS00057125};; UDP-N-acetylmuramate dehydrogenase {ECO:0000256|HAMAP-Rule:MF_00037}; TaxID=1447239 species="Bacteria; environmental samples.;" source="uncultured bacterium lac153.;"
UDP-N-acetylenolpyruvoylglucosamine reductase; K00075 UDP-N-acetylmuramate dehydrogenase [EC:1.1.1.158]
UDP-N-acetylenolpyruvoylglucosamine reductase n=1 Tax=Pseudoxanthomonas suwonensis (strain 11-1) RepID=E6WSD7_PSEUU
scnpilot_solids1_trim150_scaffold_995_curated_2
Stenotrophomonas maltophilia, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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768..1709
DNA (942bp) protein (314aa)
membrane protein n=1 Tax=Stenotrophomonas maltophilia RepID=UPI00037956AF
Integral membrane protein; K15270 S-adenosylmethionine uptake transporter
Integral membrane protein {ECO:0000313|EMBL:CCH12457.1}; TaxID=1163399 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas; Stenotrophomonas maltophilia group.;" source="Stenotrophomonas maltophilia D457.;"
scnpilot_solids1_trim150_scaffold_995_curated_3
Stenotrophomonas sp. SKA14, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(1901..2251)
DNA (351bp) protein (117aa)
Mor transcription activator family n=1 Tax=Stenotrophomonas sp. SKA14 RepID=B8LA69_9GAMM
Mor transcription activator family {ECO:0000313|EMBL:EED39386.1}; TaxID=391601 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas sp. SKA14.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_995_curated_4
Stenotrophomonas sp. SKA14, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(2248..2712)
DNA (465bp) protein (155aa)
Putative uncharacterized protein n=1 Tax=Stenotrophomonas sp. SKA14 RepID=B8LA70_9GAMM
Putative uncharacterized protein {ECO:0000313|EMBL:EED41013.1}; TaxID=391601 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas sp. SKA14.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_995_curated_5

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comp(2709..3254)
DNA (546bp) protein (182aa)
Uncharacterized protein (Fragment) n=1 Tax=mine drainage metagenome RepID=T0Z221_9ZZZZ
Uncharacterized protein {ECO:0000313|EMBL:KKK49083.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_995_curated_6
Lysobacter concretionis, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(3257..4159)
DNA (903bp) protein (301aa)
Recombination-associated protein RdgC {ECO:0000256|HAMAP-Rule:MF_00194, ECO:0000256|SAAS:SAAS00073315}; TaxID=1122185 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter concretionis Ko07 = DSM 16239.;"
Recombination-associated protein RdgC id=2693712 bin=GWF1_Xanthomonadales_69_6 species=Xanthomonas albilineans genus=Xanthomonas taxon_order=Xanthomonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWF1_Xanthomonadales_69_6 organism_group=Gammaproteobacteria
rdgC; recombination associated protein; K03554 recombination associated protein RdgC
scnpilot_solids1_trim150_scaffold_995_curated_7
unknown

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comp(4162..4413)
DNA (252bp) protein (84aa)

This feature has no annotations

scnpilot_solids1_trim150_scaffold_995_curated_8
unknown

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comp(4413..4673)
DNA (261bp) protein (87aa)

This feature has no annotations

scnpilot_solids1_trim150_scaffold_995_curated_9
unknown

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comp(4670..4933)
DNA (264bp) protein (88aa)

This feature has no annotations

scnpilot_solids1_trim150_scaffold_995_curated_10
Stenotrophomonas maltophilia, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(4933..5301)
DNA (369bp) protein (123aa)
Putative uncharacterized protein n=1 Tax=Stenotrophomonas sp. SKA14 RepID=B8LA74_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:KDE89308.1}; TaxID=1451188 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas; Stenotrophomonas maltophilia group.;" source="Stenotrophomonas maltophilia M30.;"
single-stranded DNA binding protein
scnpilot_solids1_trim150_scaffold_995_curated_11
Thioalkalivibrio sulfidiphilus, Thioalkalivibrio, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(5301..5915)
DNA (615bp) protein (205aa)
Uncharacterized protein n=1 Tax=Thioalkalivibrio sp. (strain HL-EbGR7) RepID=B8GS38_THISH
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACL72742.1}; TaxID=396588 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Ectothiorhodospiraceae; Thioalkalivibrio.;" source="Thioalkalivibrio sulfidiphilus (strain HL-EbGR7).;"
scnpilot_solids1_trim150_scaffold_995_curated_12
unknown

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comp(5918..6250)
DNA (333bp) protein (111aa)

This feature has no annotations

scnpilot_solids1_trim150_scaffold_995_curated_13
Stenotrophomonas maltophilia, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(6247..6744)
DNA (498bp) protein (166aa)
Uncharacterized protein {ECO:0000313|EMBL:KDE89314.1}; TaxID=1451188 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas; Stenotrophomonas maltophilia group.;" source="Stenotrophomonas maltophilia M30.;"
scnpilot_solids1_trim150_scaffold_995_curated_14
unknown

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comp(6737..7075)
DNA (339bp) protein (113aa)

This feature has no annotations

scnpilot_solids1_trim150_scaffold_995_curated_15
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(7059..7460)
DNA (402bp) protein (134aa)
Uncharacterized protein n=1 Tax=Rhodanobacter denitrificans RepID=M4NQL8_9GAMM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGG89891.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids1_trim150_scaffold_995_curated_16
unknown

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comp(7460..7717)
DNA (258bp) protein (86aa)

This feature has no annotations

scnpilot_solids1_trim150_scaffold_995_curated_17
unknown

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comp(7714..7908)
DNA (195bp) protein (65aa)

This feature has no annotations

scnpilot_solids1_trim150_scaffold_995_curated_18
unknown

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comp(7901..8206)
DNA (306bp) protein (102aa)

This feature has no annotations

scnpilot_solids1_trim150_scaffold_995_curated_19
Stenotrophomonas sp. SKA14, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(8209..9375)
DNA (1167bp) protein (389aa)
Gp08 n=1 Tax=Stenotrophomonas sp. SKA14 RepID=B8LA71_9GAMM
Gp08 {ECO:0000313|EMBL:EED41377.1}; TaxID=391601 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas sp. SKA14.;"
prophage DNA-binding protein
scnpilot_solids1_trim150_scaffold_995_curated_20
Stenotrophomonas sp. SKA14, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9372..11180)
DNA (1809bp) protein (603aa)
Gp40 n=1 Tax=Stenotrophomonas sp. SKA14 RepID=B8LA85_9GAMM
Gp40 {ECO:0000313|EMBL:EED39247.1}; TaxID=391601 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas sp. SKA14.;"
transposase
scnpilot_solids1_trim150_scaffold_995_curated_21
Stenotrophomonas sp. SKA14, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(11183..12142)
DNA (960bp) protein (320aa)
Gp10 n=1 Tax=Stenotrophomonas sp. SKA14 RepID=B8LA86_9GAMM
Gp10 {ECO:0000313|EMBL:EED38709.1}; TaxID=391601 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas sp. SKA14.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_995_curated_22
Stenotrophomonas sp. SKA14, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12159..12452)
DNA (294bp) protein (98aa)
Putative uncharacterized protein n=1 Tax=Stenotrophomonas sp. SKA14 RepID=B8LA87_9GAMM
Putative uncharacterized protein {ECO:0000313|EMBL:EED39743.1}; TaxID=391601 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas sp. SKA14.;"
regulatory protein iclr
scnpilot_solids1_trim150_scaffold_995_curated_23
unknown

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comp(12449..12652)
DNA (204bp) protein (68aa)

This feature has no annotations

scnpilot_solids1_trim150_scaffold_995_curated_24
Stenotrophomonas maltophilia, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(12649..13068)
DNA (420bp) protein (140aa)
Putative Transcriptional regulator (Putative DNA-binding phage protein) n=1 Tax=Ralstonia solanacearum CMR15 RepID=D8NGL3_RALSL
Uncharacterized protein {ECO:0000313|EMBL:KDE89323.1}; TaxID=1451188 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas; Stenotrophomonas maltophilia group.;" source="Stenotrophomonas maltophilia M30.;"
putative Transcriptional regulator (putative DNA-binding phage protein)
scnpilot_solids1_trim150_scaffold_995_curated_25
Xanthomonas perforans, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(13065..13280)
DNA (216bp) protein (72aa)
hypothetical protein n=1 Tax=Xanthomonas vasicola RepID=UPI00036A5FB0
Hypothetical Protein
Uncharacterized protein {ECO:0000313|EMBL:EGD14887.1}; TaxID=925776 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas perforans 91-118.;"
scnpilot_solids1_trim150_scaffold_995_curated_26
Candidatus Accumulibacter sp. BA-94, Candidatus Accumulibacter, Betaproteobacteria, Proteobacteria, Bacteria

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13374..13832
DNA (459bp) protein (153aa)
Putative transcriptional regulator n=1 Tax=Synechococcus sp. PCC 7502 RepID=K9STN9_9SYNE
Putative PBSX repressor {ECO:0000313|EMBL:EXI92094.1}; TaxID=1454005 species="Bacteria; Proteobacteria; Betaproteobacteria; Candidatus Accumulibacter.;" source="Candidatus Accumulibacter sp. BA-94.;"
transcriptional regulator
scnpilot_solids1_trim150_scaffold_995_curated_27
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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13829..14452
DNA (624bp) protein (208aa)
Uncharacterized protein n=1 Tax=Rhodanobacter sp. 115 RepID=I4VI75_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL86916.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
scnpilot_solids1_trim150_scaffold_995_curated_28
unknown

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14482..14901
DNA (420bp) protein (140aa)

This feature has no annotations

scnpilot_solids1_trim150_scaffold_995_curated_29
unknown

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14907..15203
DNA (297bp) protein (99aa)
hypothetical protein n=1 Tax=Brachymonas chironomi RepID=UPI00037F99EE
scnpilot_solids1_trim150_scaffold_995_curated_30
unknown

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15501..15821
DNA (321bp) protein (107aa)

This feature has no annotations

Displaying items 1-30 of 36 in total

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