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scnpilot_solids1_trim150_scaffold_1926_curated

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Displaying 14 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids1_trim150_scaffold_1926_curated_1
Arenimonas metalli, Arenimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(1..84)
-----------------
DNA (84bp)
protein (28aa)
Uncharacterized protein {ECO:0000313|EMBL:KFN46741.1}; TaxID=1384056 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Arenimonas.;" source="Arenimonas metalli CF5-1.;"
Type II secretory pathway protein id=2974411 bin=GWF1_Xanthomonadales_69_6 species=gamma proteobacterium HdN1 genus=unknown taxon_order=unknown taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWF1_Xanthomonadales_69_6 organism_group=Gammaproteobacteria
type II secretory pathway protein; K02652 type IV pilus assembly protein PilB
scnpilot_solids1_trim150_scaffold_1926_curated_2
unknown

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comp(111..968)
-----------------
DNA (858bp)
protein (286aa)

This feature has no annotations

scnpilot_solids1_trim150_scaffold_1926_curated_3
Arenimonas metalli, Arenimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(965..1786)
-----------------
DNA (822bp)
protein (274aa)
Uncharacterized protein {ECO:0000313|EMBL:KFN46741.1}; TaxID=1384056 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Arenimonas.;" source="Arenimonas metalli CF5-1.;"
Type II secretory pathway protein id=2974411 bin=GWF1_Xanthomonadales_69_6 species=gamma proteobacterium HdN1 genus=unknown taxon_order=unknown taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWF1_Xanthomonadales_69_6 organism_group=Gammaproteobacteria
type II secretory pathway protein; K02652 type IV pilus assembly protein PilB
scnpilot_solids1_trim150_scaffold_1926_curated_4
Lysobacter daejeonensis, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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1877..2638
-----------------
DNA (762bp)
protein (254aa)
Ubiquinone/menaquinone biosynthesis C-methyltransferase UbiE {ECO:0000256|HAMAP-Rule:MF_01813}; EC=2.1.1.163 {ECO:0000256|HAMAP-Rule:MF_01813};; EC=2.1.1.201 {ECO:0000256|HAMAP-Rule:MF_01813};; 2-methoxy-6-polyprenyl-1,4-benzoquinol methylase {ECO:0000256|HAMAP-Rule:MF_01813}; Demethylmenaquinone methyltransferase {ECO:0000256|HAMAP-Rule:MF_01813}; TaxID=1385517 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter daejeonensis GH1-9.;"
ubiquinone/menaquinone biosynthesis methyltransferase; K03183 ubiquinone/menaquinone biosynthesis methyltransferase [EC:2.1.1.163 2.1.1.201]
Ubiquinone/menaquinone biosynthesis C-methyltransferase UbiE n=1 Tax=Pseudoxanthomonas suwonensis (strain 11-1) RepID=E6WPV2_PSEUU
scnpilot_solids1_trim150_scaffold_1926_curated_5
unknown

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2643..2831
-----------------
DNA (189bp)
protein (63aa)

This feature has no annotations

scnpilot_solids1_trim150_scaffold_1926_curated_6
Xanthomonas translucens, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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2837..3547
-----------------
DNA (711bp)
protein (237aa)
Uracil-DNA glycosylase {ECO:0000256|HAMAP-Rule:MF_00148}; Short=UDG {ECO:0000256|HAMAP-Rule:MF_00148};; EC=3.2.2.27 {ECO:0000256|HAMAP-Rule:MF_00148};; TaxID=1195885 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas translucens pv. graminis ART-Xtg29.;"
Ung; uracil-DNA glycosylase; K03648 uracil-DNA glycosylase [EC:3.2.2.27]
Uracil-DNA glycosylase n=1 Tax=Xanthomonas translucens pv. graminis ART-Xtg29 RepID=K8Z2H4_XANCT
scnpilot_solids1_trim150_scaffold_1926_curated_7
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(3534..4286)
-----------------
DNA (753bp)
protein (251aa)
phosphomethylpyrimidine kinase; K00941 hydroxymethylpyrimidine/phosphomethylpyrimidine kinase [EC:2.7.1.49 2.7.4.7]
Phosphomethylpyrimidine kinase / hydroxymethylpyrimidine kinase n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VQ31_9GAMM
Phosphomethylpyrimidine kinase / hydroxymethylpyrimidine kinase {ECO:0000313|EMBL:EIL89322.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
scnpilot_solids1_trim150_scaffold_1926_curated_8
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(4283..4891)
-----------------
DNA (609bp)
protein (203aa)
Thiamine-phosphate synthase {ECO:0000256|RuleBase:RU003826}; EC=2.5.1.3 {ECO:0000256|RuleBase:RU003826};; Thiamine-phosphate pyrophosphorylase {ECO:0000256|RuleBase:RU003826}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
Thiamine-phosphate synthase n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VZU5_9GAMM
thiE1; thiamine-phosphate pyrophosphorylase
scnpilot_solids1_trim150_scaffold_1926_curated_9
Devosia riboflavina, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(4888..5655)
-----------------
DNA (768bp)
protein (256aa)
Thiazole synthase {ECO:0000256|HAMAP-Rule:MF_00443}; EC=2.8.1.10 {ECO:0000256|HAMAP-Rule:MF_00443};; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
Thiazole synthase n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VZU4_9GAMM
thiazole biosynthesis protein; K03149 thiamine biosynthesis ThiG
scnpilot_solids1_trim150_scaffold_1926_curated_10
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(5657..5857)
-----------------
DNA (201bp)
protein (67aa)
Thiamine biosynthesis protein ThiS n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VZU3_9GAMM
Thiamine biosynthesis protein ThiS {ECO:0000313|EMBL:EIL92734.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
thiamine biosynthesis protein ThiS; K03154 sulfur carrier protein
scnpilot_solids1_trim150_scaffold_1926_curated_11
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(5854..6822)
-----------------
DNA (969bp)
protein (323aa)
glycine oxidase ThiO; K03153 glycine oxidase [EC:1.4.3.19]
Glycine oxidase ThiO n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VQ26_9GAMM
Glycine oxidase ThiO {ECO:0000313|EMBL:EIL89317.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
scnpilot_solids1_trim150_scaffold_1926_curated_12
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(6819..8627)
-----------------
DNA (1809bp)
protein (603aa)
Phosphomethylpyrimidine synthase {ECO:0000256|HAMAP-Rule:MF_00089, ECO:0000256|SAAS:SAAS00007814}; EC=4.1.99.17 {ECO:0000256|HAMAP-Rule:MF_00089, ECO:0000256|SAAS:SAAS00007809};; Hydroxymethylpyrimidine phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00089}; Thiamine biosynthesis protein ThiC {ECO:0000256|HAMAP-Rule:MF_00089}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
Phosphomethylpyrimidine synthase n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VQ25_9GAMM
thiamine biosynthesis protein ThiC; K03147 thiamine biosynthesis protein ThiC
scnpilot_solids1_trim150_scaffold_1926_curated_13
Lysobacter dokdonensis, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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9005..9871
-----------------
DNA (867bp)
protein (289aa)
RNA polymerase sigma factor RpoH n=2 Tax=Stenotrophomonas maltophilia RepID=B4SL96_STRM5
RNA polymerase sigma factor RpoH {ECO:0000256|HAMAP-Rule:MF_00961}; RNA polymerase sigma-32 factor {ECO:0000256|HAMAP-Rule:MF_00961}; TaxID=1300345 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter dokdonensis DS-58.;"
RNA polymerase factor sigma-32; K03089 RNA polymerase sigma-32 factor
scnpilot_solids1_trim150_scaffold_1926_curated_14
Xanthomonas translucens, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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10005..10226
-----------------
DNA (222bp)
protein (74aa)
Uncharacterized protein n=1 Tax=Xanthomonas translucens DAR61454 RepID=L7GC25_XANCT
Uncharacterized protein {ECO:0000313|EMBL:ELQ03475.1}; TaxID=1205753 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas translucens DAR61454.;"
hypothetical protein
Displaying 14 items

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