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scnpilot_solids1_trim150_scaffold_1302_curated_5

Organism: solids_Xanthomonadales_2

partial RP 17 / 55 MC: 2 BSCG 18 / 51 MC: 2 ASCG 7 / 38
Location: 5250..6002

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase sigma factor FliA n=1 Tax=Pseudoxanthomonas spadix (strain BD-a59) RepID=G7UWF2_PSEUP similarity UNIREF
DB: UNIREF100
  • Identity: 68.4
  • Coverage: 244.0
  • Bit_score: 337
  • Evalue 1.10e-89
RNA polymerase sigma factor FliA {ECO:0000256|HAMAP-Rule:MF_00962}; RNA polymerase sigma factor for flagellar operon {ECO:0000256|HAMAP-Rule:MF_00962}; Sigma F {ECO:0000256|HAMAP-Rule:MF_00962}; Sigma-28 {ECO:0000256|HAMAP-Rule:MF_00962}; TaxID=913325 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter arseniciresistens ZS79.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 73.5
  • Coverage: 249.0
  • Bit_score: 364
  • Evalue 1.20e-97
RNA polymerase sigma-28 subunit FliA/WhiG; K02405 RNA polymerase sigma factor for flagellar operon FliA similarity KEGG
DB: KEGG
  • Identity: 68.4
  • Coverage: 244.0
  • Bit_score: 337
  • Evalue 3.50e-90

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Taxonomy

Lysobacter arseniciresistens → Lysobacter → Xanthomonadales → Gammaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 753
ATGATGAACACCGGGGCCGCCCAGTATCGCGCCCAGCAGACCGGTGATGCCGCCGCCATCGTCGCGCGCCACGCCGAGCTGGTGCGCCGCATCGCCCACCACCTGGCGGCGCGGCTGCCGTCCAGCGTCGACATCGACGACCTGATCCAGGCCGGCATGATCGGCCTCATCGAAGCGGCGCGGAACTTCCAGTCCGACCAGGGCGCCACCTTCGAAACCTACGCTTCGATCCGCATCCGCGGCTCGATGATCGACGCGATCCGCGCCGGCGACTGGGTCCCGCGCTCGGTCCACCGCCGCTACCGCGACGTGGTCGCCGCCACCCGCAACGTGGAGCAGCGCGAAGGCCGCGCCGCCACCTCGCAGGAAATCGCTGGCGTGCTGGGCATGAGCGTCGACGACTATCACCACGTGCTGCAGGACGCCGCCCGCGGCCAGCTGCTGAGCCTGGACGAATACGCCGAGGAACACGACGGCGAGCCGCGCCTGGAACAGCAGGACAACATCCCCCCCGCCCGCCGCTTCGAGCAGGGCGCTTTCCGGTCCGCGCTGGGCGACGCCATCGAGAACCTGCCGGAGCGCGAGCAGCTGGTGCTGTCACTGTACTACGAGCAGGAAATGAACCTGCGCGAGATCGGCGCCGTGCTCAACGTCAGCGAATCGCGGGTCTGCCAGATCCATGGCCAGGCCATGCTGCGGCTGCGCTCGCGGCTGACCGACTGGCGCAGCGAGATCGACGCCGAAATGGCCTGA
PROTEIN sequence
Length: 251
MMNTGAAQYRAQQTGDAAAIVARHAELVRRIAHHLAARLPSSVDIDDLIQAGMIGLIEAARNFQSDQGATFETYASIRIRGSMIDAIRAGDWVPRSVHRRYRDVVAATRNVEQREGRAATSQEIAGVLGMSVDDYHHVLQDAARGQLLSLDEYAEEHDGEPRLEQQDNIPPARRFEQGAFRSALGDAIENLPEREQLVLSLYYEQEMNLREIGAVLNVSESRVCQIHGQAMLRLRSRLTDWRSEIDAEMA*